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The Digestive Function of Pseudoplatystoma punctifer Early Juveniles Is Differentially Modulated by Dietary Protein, Lipid and Carbohydrate Content and Their Ratios ArchiMer
Castro-ruiz, Diana; Andree, Karl B.; Solovyev, Mikhail M.; Fernández-méndez, Christian; García-dávila, Carmen; Cahu, Chantal; Gisbert, Enric; Darias, Maria J..
Pseudoplatystoma punctifer is an Amazonian catfish highly appreciated for its high flesh quality, size, and commercial value. Its aquaculture is pursued to satisfy the demands of an increasing population in the region. However, knowledge of the nutritional needs during the early life stages is necessary for improving growth and reducing the incidence of cannibalism, factors that limit the success of its commercial farming. This study aimed at evaluating the influence of four diets containing different protein and lipid levels (30:15, 30:10, 45:15, or 45:10 in %) in the digestive physiology and performance of early juveniles. The results showed that the dietary protein:lipid as well as carbohydrate levels and ratios influenced differently the whole-body...
Tipo: Text Palavras-chave: Neotropical fish; Aquaculture; Digestive enzymes; Gene expression; Nutrition; Juveniles; Histology; Development; Macronutrients; Diet.
Ano: 2021 URL: https://archimer.ifremer.fr/doc/00678/79019/81420.pdf
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Le développement de la mytiliculture sur filières en Bretagne. Bilan des travaux ArchiMer
Omnes, Marie-helene.
Le bilan du suivi des élevages de moules sur filières montre l'évolution de cette nouvelle pratique culturale en Bretagne et met en évidence les difficultés qui demeurent un frein au développement et à l'extension de ce type d'élevage. Il s'agit en particulier de l'influence du milieu pour certains sites (contamination par le "Dinophysis"), de problèmes biologiques et surtout d'ordre pathologique, liés à de fortes infestations des moules par un vers parasite de la famille des trématodes et responsable de mortalités élevées pour les secteurs Sud-Bretagne. Le choix de l'espèce se précise : les producteurs se tournent vers l'élevage de la moule locale captée naturellement sur les installations. Celle-ci a une meilleure tenue sur les supports et à la...
Tipo: Text Palavras-chave: Mytiliculture; Filières; Croissance; Trématodes; Développement; Mussel farming; Long-lines; Growth; Trematodes; Development.
Ano: 1987 URL: http://archimer.ifremer.fr/doc/00052/16310/13803.pdf
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Fantastically plastic: fish larvae equipped for a new world ArchiMer
Pittman, Karin; Yufera, Manuel; Pavlidis, Michail; Geffen, Audrey J.; Koven, Willian; Ribeiro, Laura; Zambonino, Jose Luiz; Tandler, Amos.
Teleost fish are more diverse than any other vertebrate group, and yet only a limited number of species are fished and farmed globally. Efforts to expand the quantity and diversity of fish produced are hampered by the extreme diversity of ontogenetic responses of fish, especially during larval development. This review looks at advances in molecular phylogeny, endocrine and nutrient influences and long-term studies of the phenotypes of commercially important fish to put the sources and consequences of this plasticity into context. This nested context of evolutionary forces of the fish-specific genome duplication, epigenetic influences, ontogenetically conserved processes like metamorphosis and cell determination is further presented in relation to how fish...
Tipo: Text Palavras-chave: Development; Epigenetics; Fish-specific genome duplication; Juveniles; Larvae; Metamorphosis; Plasticity.
Ano: 2013 URL: http://archimer.ifremer.fr/doc/00144/25509/23655.pdf
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Influence of environmental conditions on early development of the hydrothermal vent polychaete Alvinella pompejana ArchiMer
Pradillon, F; Le Bris, Nadine; Shillito, B; Young, C; Gaill, F.
Dispersal and colonisation processes at deep-sea vents are still not fully understood, essentially because early life stages of vent species remain unknown. The polychaete worm Alvinella pompejana forms colonies on chimney walls at East Pacific Rise vent sites where the temperature can frequently exceed 20 degrees C. In vitro studies in pressure vessels showed that the early embryos tolerate temperatures in a lower range (10-14 degrees C), suggesting that they would have to escape the colony to develop. Pressure vessels offer the advantage that each parameter can be independently controlled, but they do not simulate the more complex and dynamic conditions naturally encountered at vent sites. Accordingly, in addition to incubations in pressure vessels, we...
Tipo: Text Palavras-chave: Environmental condition; H2S; Temperature tolerance; Polychaete; Pressure vessel; Embryo; Development; Hydrothermal vent.
Ano: 2005 URL: http://archimer.ifremer.fr/doc/2005/publication-600.pdf
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Structural and functional characterizations of an Activin type II receptor orthologue from the pacific oyster Crassostrea gigas ArchiMer
Le Quere, Herve; Herpin, Amaury; Huvet, Arnaud; Lelong, Christophe; Favrel, Pascal.
Members of the Transforming Growth factor beta (TGF-beta) superfamily of cell signalling polypeptides are known to play important roles in cell proliferation and differentiation during development and in various physiological processes of most animal clades. Recent findings in the mollusc Crassostrea gigas demonstrate the occurrence of a diversity of TGF-beta signalling components including various ligands, three type I receptors but only a single type II receptor. This report describes the characterization of Cg-ActRII, a new type II receptor displaying homology with vertebrate and Drosophila Activin type II receptors. The use of zebrafish embryo as a reporter organism revealed that, in a way similar to its zebrafish counterpart, overexpression of...
Tipo: Text Palavras-chave: Activin receptor; Nervous tissues; Development; Lophotrochozoa; Mollusc.
Ano: 2009 URL: http://archimer.ifremer.fr/doc/2009/publication-6401.pdf
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A review of the economic status of molluscs - shellfish culture ArchiMer
Troadec, Jean-paul.
To describe the value of shellfish culture in economic and social terms and evaluate its potential for expansion by identifying and ranking the major constraints and the ways in which research and development can overcome them.
Tipo: Text Palavras-chave: Social; Economic; Development; Value of shellfish culture.
Ano: 1985 URL: http://archimer.ifremer.fr/doc/1985/acte-6222.PDF
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Etat de l'environnement sur la facade atlantique ArchiMer
Mauvais, Jean-louis; Goarnisson, Roger.
This document was drawn up by a working group and based upon forecasting considerations concerning the Atlantic seaboard. Within can be found a summary of different issues affecting the coastline : inputs, estuaries, green tides, spreading species, wetlands, state of biological resources, sand and gravel as well as hydrocarbon extraction, development consequences, coastline evolution, littoral landscapes, large-size debris. This report summarizes coastline monitoring as well : the marine national monitoring network, microbiological surveillance of beaches and zones of shellfish production, plytoplankton monitoring, shellfish growth. Lastly, this document discusses proposed actions for the improvement of water quality by the Water Agencies of...
Tipo: Text Palavras-chave: Bacterial pollutions; Chemical pollutions; Marine aggregates; Biological marine resources; Spreading species; Green tides; Estuaries; Monitoring; Development; Coastline environment; Pollutions bactérienne; Pollutions chimique; Granulats marins; Ressources vivantes marines; Espèces proliférantes; Marées vertes; Estuaires; Surveillance; Aménagement; Environnement littoral.
Ano: 1999 URL: http://archimer.ifremer.fr/doc/1999/rapport-1097.pdf
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Ontogeny of the gastrointestinal tract of marine fish larvae ArchiMer
Zambonino, Jose-luis; Cahu, Chantal.
Marine fish larvae undergo major morphological and cellular changes during the first month of life. The ontogeny of the gastrointestinal tract combines these two aspects of the larval development and is very interesting in that the timing of functional changes appears genetically hard-wired. The goal of this paper is to give an overview of the gastrointestinal development process in marine fish larvae, with particular attention to three species: sea bass; red drum; and sole, since the description of gut maturation in fish larvae was initiated during the last decade with these species. During the early stages, marine fish larvae exhibit particular digestive features. Concerning the exocrine pancreas, amylase expression decreases with age from the third week...
Tipo: Text Palavras-chave: Proteins; Pancreatic enzymes; Lipids; Larvae feeds; Intestinal enzymes; Glucides; Fish larvae; Enzyme expression; Digestion; Development; Aquaculture.
Ano: 2001 URL: http://archimer.ifremer.fr/doc/2001/publication-650.pdf
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Oyster vasa-like gene as a marker of the germline cell development in Crassostrea gigas ArchiMer
Fabioux, Caroline; Huvet, Arnaud; Lelong, C; Robert, Rene; Pouvreau, Stephane; Daniel, Jean-yves; Mingant, Christian; Le Pennec, M.
The oyster vasa-like gene was previously demonstrated to be specifically expressed in germline cells of adult oysters Crassostrea gigas. In the present study, this gene was used as a molecular marker to establish the developmental pattern of germline cells during oyster ontogenesis. using whole-mount in situ hybridization and real-time PCR. The Oyvlg transcripts appeared to be localized to the vegetal pole of unfertilized oocytes and maternally transmitted to embryos. At early development, these maternal transcripts were observed to segregate into a single blastomere, from the CD macromere of 2-cell stage to the 4d mesentoblast of blastula. From late blastula stage, the mesentoblast divided into two cell clumps that migrated to both sides of the larvae...
Tipo: Text Palavras-chave: Primordial germ cells; Oyster vasa like gene; Germline; Development; Crassostrea gigas.
Ano: 2004 URL: http://archimer.ifremer.fr/doc/2004/publication-648.pdf
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Evolutionary and Cardio‐Respiratory Physiology of Air‐breathing and Amphibious Fishes ArchiMer
Damsgaard, Christian; Baliga, Vikram B.; Bates, Eric; Burggren, Warren; Mckenzie, David; Taylor, Edwin; Wright, Patricia A..
Air‐breathing and amphibious fishes are essential study organisms to shed insight into the required physiological shifts that supported the full transition from aquatic water‐breathing fishes to terrestrial air‐breathing tetrapods. While the origin of air‐breathing in the evolutionary history of the tetrapods has received considerable focus, much less is known about the evolutionary physiology of air‐breathing among fishes. This review summarises recent advances within the field with specific emphasis on the cardiorespiratory regulation associated with air‐breathing and terrestrial excursions, and how respiratory physiology of these living transitional forms are affected by development and personality. Finally, we provide a detailed and re‐evaluated model...
Tipo: Text Palavras-chave: Development; Evolution; Phenotypic plasticity; Terrestrialization; Water-to-air transition.
Ano: 2020 URL: https://archimer.ifremer.fr/doc/00588/70029/67946.pdf
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Bases biologiques de la production de deux Mollusques d'intérêt économique: reproduction chez Megathura crenulata, reproduction et développement chez Crassostrea gigas ArchiMer
Cannuel, Rozenn.
The reproductive cycle of Megathura crenulata was documented and quantification of oocyte lipid reserves with lipo-specific stains was explored in both this species and in Crassostrea gigas. The necessity of providing food to female broodstock C. gigas in spring was re-evaluated, because subsequent larval and post-larval rearing performance was not affected by broodstock starvation during conditioning. Developmental study of the organs responsible of particle processing in C. gigas allowed the identification of critical stages related to the ontogenesis of each organ, as well as a better understanding of the evolution of these organs, highly-modified in the Ostreidae. Ciliary type identification and mucocyte mapping from post-larval to adult stage showed...
Tipo: Text Palavras-chave: Mucocytes; Mantle; Gill; Larvae postlarvae juveniles; Feeding; Crassostrea gigas; Megathura crenulata; Development; Reproduction; Mucocytes; Manteau; Branchie; Larves post larves juvéniles; Alimentation; Crassostrea gigas; Megathura crenulata; Développement; Reproduction.
Ano: 2005 URL: http://archimer.ifremer.fr/doc/2005/these-1371.pdf
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Shellfish culture in France : present status and new approaches to optimise production ArchiMer
Goulletquer, Philippe.
France is presently one of the leading countries in Europe for shellfish production with 152,000 metric tonnes of the Pacific cupped oyster C. gigas, 2,500 tonnes of flat oyster O. edulis, and more than 60,000 tonnes of mussels M. edulis and M. galloprovincialis. Moreover, species like the pearl oyster Pinctada margaritifera in French Polynesia, and on the Atlantic coastline the scallop Pecten maximus and the Manila clam Tapes philippinarum contribute significantly to the overall landings. . Since traditional rearing areas are now almost overloaded, new management practices are currently under review to optimise and develop shellfish culture. Besides the products resulting from genetic research (e.g. triploids, tetraploids and disease resistant strains),...
Tipo: Text Palavras-chave: Coastal management; Development; Research; Traditional osyter ponds; Semi intensive technique; Shellfish industry.
Ano: 1998 URL: http://archimer.ifremer.fr/doc/1998/acte-3094.pdf
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Measuring Histone Modifications in the Human Parasite Schistosoma mansoni. ArchiMer
De Carvalho Augusto, Ronaldo; Roquis, David; Al Picard, Marion; Chaparro, Christian; Cosseau, Celine; Grunau, Christoph.
DNA-binding proteins play critical roles in many major processes such as development and sexual biology of Schistosoma mansoni and are important for the pathogenesis of schistosomiasis. Chromatin immunoprecipitation (ChIP) experiments followed by sequencing (ChIP-seq) are useful to characterize the association of genomic regions with posttranslational chemical modifications of histone proteins. Challenges in the standard ChIP protocol have motivated recent enhancements in this approach, such as reducing the number of cells required and increasing the resolution. In this chapter, we describe the latest advances made by our group in the ChIP methods to improve the standard ChIP protocol to reduce the number of input cells required and to increase the...
Tipo: Text Palavras-chave: Native chromatin immunoprecipitation; ChIPmentation; Histone modifications; Schistosomiasis; Trematode; Development.
Ano: 2020 URL: https://archimer.ifremer.fr/doc/00653/76553/77671.pdf
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Gene expression pattern of digestive and antioxidant enzymes during the larval development of reared Atlantic bluefin tuna (ABFT), Thunnus thynnus L. ArchiMer
Mazurais, David; Coves, Denis; Papandroulakis, Nikos; Ortega, Aurelio; Desbruyeres, Elisabeth; Huelvan, Christine; Le Gall, Marie-madeleine; De La Gandara, Fernando; Cahu, Chantal.
The aim of this study was to determine whether mortality observed during the larval development of reared bluefin tuna (Thunnus thynnus) could be related to improper expression profiles of key genes involved in digestive or antioxidant response capabilities. Tuna larvae were sampled at hatching, 2, 5, 10, 15 and 20 dph (days post hatching) for the relative quantification of transcripts encoded by genes involved in digestive [trypsinogen 1 (TRYP1), alpha-amylase (AMY), aminopeptidase N (ANPEP)] and antioxidant [catalase (CAT)] functions. The levels of expression of ANPEP related to the development and maturation of intestinal function increased from 5 to 20 dph. Furthermore, AMY and TRYP1 genes, which are pancreatic enzymes implicated in carbohydrate and...
Tipo: Text Palavras-chave: Tuna; Gene; Expression; Development; Digestion; Antioxidant.
Ano: 2015 URL: https://archimer.ifremer.fr/doc/00171/28264/26521.pdf
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Gene expression patterns during the larval development of European sea bass (Dicentrarchus labrax) by microarray analysis ArchiMer
Darias, Maria J.; Zambonino, Jose-luis; Hugot, K; Cahu, Chantal; Mazurais, David.
During the larval period, marine teleosts undergo very fast growth and dramatic changes in morphology, metabolism, and behavior to accomplish their metamorphosis into juvenile fish. Regulation of gene expression is widely thought to be a key mechanism underlying the management of the biological processes required for harmonious development over this phase of life. To provide an overall analysis of gene expression in the whole body during sea bass larval development, we monitored the expression of 6,626 distinct genes at 10 different points in time between 7 and 43 days post-hatching (dph) by using heterologous hybridization of a rainbow trout cDNA microarray. The differentially expressed genes (n = 485) could be grouped into two categories: genes that were...
Tipo: Text Palavras-chave: Sea bass; Gene expression; Microarray; Development; Fish larvae.
Ano: 2008 URL: http://archimer.ifremer.fr/doc/2008/publication-4344.pdf
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GigaTON: an extensive publicly searchable database providing a new reference transcriptome in the pacific oyster Crassostrea gigas ArchiMer
Riviere, Guillaume; Klopp, Christophe; Ibouniyamine, Nabihoudine; Huvet, Arnaud; Boudry, Pierre; Favrel, Pascal.
Background: The Pacific oyster, Crassostrea gigas, is one of the most important aquaculture shellfish resources worldwide. Important efforts have been undertaken towards a better knowledge of its genome and transcriptome, which makes now C. gigas becoming a model organism among lophotrochozoans, the under-described sister clade of ecdysozoans within protostomes. These massive sequencing efforts offer the opportunity to assemble gene expression data and make such resource accessible and exploitable for the scientific community. Therefore, we undertook this assembly into an up-to-date publicly available transcriptome database: the GigaTON (Gigas TranscriptOme pipeliNe) database. Description: We assembled 2204 million sequences obtained from 114 publicly...
Tipo: Text Palavras-chave: Oyster; Transcriptome; Development; Stress; Tissues; NGS.
Ano: 2015 URL: https://archimer.ifremer.fr/doc/00302/41321/40520.pdf
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De novo assembly and annotation of the European abalone Haliotis tuberculata transcriptome ArchiMer
Harney, Ewan; Dubief, Bruno; Boudry, Pierre; Basuyaux, Olivier; Schilhabel, Markus B.; Huchette, Sylvain; Paillard, Christine; Nunes, Flavia.
The European abalone Haliotis tuberculata is a delicacy and consequently a commercially valuable gastropod species. Aquaculture production and wild populations are subjected to multiple climate-associated stressors and anthropogenic pressures, including rising sea-surface temperatures, ocean acidification and an emerging pathogenic Vibrio infection. Transcript expression data provides a valuable resource for understanding abalone responses to variation in the biotic and abiotic environment. To generate an extensive transcriptome, we performed next-generation sequencing of RNA on larvae exposed to temperature and pH variation and on haemolymph of adults from two wild populations after experimental infection with Vibrio harveyi. We obtained more than 1.5...
Tipo: Text Palavras-chave: RNA-Seq; Mollusca; Gastropoda; Development; Vibrio harveyi; Climate change.
Ano: 2016 URL: https://archimer.ifremer.fr/doc/00318/42940/45103.pdf
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The development of marine fish farming in europe : a parallel with salmon culture ArchiMer
Harache, Yves; Paquotte, Philippe.
This paper is aimed at analysing the similar trends and different constraints which influence marine fish farming of new species such as sea-bass, sea-bream and turbot in Europe in comparison with the Norwegian salmon farming success. In a general context of low progression, European aquaculture has been characterised by the development of intensive fish farming. The most notable fact is the recent increase in intensive salmonid farming, with a turnover of almost 2 millions Ecu. More recently, the intensive farming of sea bass and sea bream has increased very rapidly in the Mediterranean Basin, although on a more reduced extent. Turbot farming is developing slowly too on the French and Spanish Atlantic coast, taking benefit of the temperate climate in...
Tipo: Text Palavras-chave: Europe; Environment; Marketing; Development; Aquaculture; SEM.
Ano: 1996 URL: http://archimer.ifremer.fr/doc/1996/acte-4069.pdf
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Contribution à l'étude de l'ontogenèse du système immunitaire chez l'huître creuse Crassostrea gigas ArchiMer
Tirape Bajana, Ana.
The interest for the understanding of the immune mechanisms in the oyster, Crassotrea gigas has been considerably increased these last years, mainly because of economie losses due to diseases which affected the continuity of this species. The studies of these mechanisms contributes to a better understanding of the differential susceptibilities observed in this species against various pathogens. In the present study, our  goal was to define the ontogenesis of immune system in C. gigas during the development, by functional genomic approaches. The studies have been focalized on the analyses of expression and localization of effectors previously identified in adult oysters as implicated in immunity. We have shown, in particular, that hemocytes appear in the...
Tipo: Text Palavras-chave: Invertébré; Mollusque bivalve; Huître; Cra; Immunité; Hémocytes; Hématopoïèse; Développement; Ontogenèse; Expression des gènes; Q-PCR; SSH; Invertebrate; Bivalve Mollusk; Oyster; Crassostrea gigas; Immunity; Hemocytes; Hematopoiesis; Development; Ontogenesis; Gene expression; Q-PCR; SSH.
Ano: 2007 URL: http://archimer.ifremer.fr/doc/00440/55113/56565.pdf
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Lifecycle Ecology of Deep-Sea Chemosymbiotic Mussels: A Review ArchiMer
Laming, Sven; Gaudron, Sylvie M.; Duperron, Sebastien.
Mussels within the subfamily Bathymodiolinae, in particular the larger Bathymodiolus species (sensu lato) thriving at cold seeps and hydrothermal vents, are among the most iconic fauna to colonize deep-sea reducing habitats globally. Fuelled by energy derived from chemosynthetic symbioses, their contribution to ecosystem productivity is conspicuous, with many bathymodioline species forming dense, extensive aggregates. Chemosymbiotic mussels play crucial roles as ecosystem engineers, both through the formation of spatially heterogeneous biogenic reefs and in redistributing reduced-fluid emissions. The notable absence of Bathymodiolinae outside of reducing ecosystems affirms their dependency on these ephemeral habitats, placing spatiotemporal constraints on...
Tipo: Text Palavras-chave: Ontogeny; Bathymodiolinae; Nutrition; Development; Larvae; Symbiosis; Reducing habitats.
Ano: 2018 URL: https://archimer.ifremer.fr/doc/00477/58915/61478.pdf
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