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Towards an Autonomous Pelagic Observatory: Experiences from Monitoring Fish Communities around Drifting FADs ArchiMer
Brehmer, Patrice; Sancho, Gorka; Trygonis, Vasilis; Itano, David; Dalen, John; Fuchs, Ariel; Faraj, Abdelmalek; Taquet, Marc.
This work presents a methodological synthesis for the in situ monitoring of fish aggregating devices (FADs) using a combination of optical, echosounder and SCUBA observations conducted in the vicinity of drifting FADs. The acoustic methods allowed, according to the devices used, the description of the spatial organisation and dynamics of biotic scattering layers, individual fishes, schools, shoals and mammals, while visual, photographic and video observations permitted species identification within a range of 0 to ~ 25 m. Based on these results, we elaborate on the interest to combine acoustic and visual methods, and present an autonomous instrumented drifting buoy for remotely monitoring fish diversity and abundance in the pelagic ecosystems. The...
Tipo: Text Palavras-chave: Optical; Census; Acoustics; Buoy; Seaorbiter; Biomonitoring; Conservation; Environmental monitoring; Fish; Pelagic.
Ano: 2019 URL: https://archimer.ifremer.fr/doc/00461/57252/59265.pdf
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Biorheological properties of intertidal organic fluff on mud flats and its modification of gill ventilation in buried sole Solea solea ArchiMer
Jenkinson, Ian; Claireaux, Guy; Gentien, Patrick.
Intertidal mudflats are important nursery grounds for juveniles of many fish species. However, they are being used increasingly to farm bivalve molluscs, which produce large amounts of organic "fluff", overlying the mud. Fish such as sole, Solea solea, hide in this fluff from potential predators, but the energy consumed by respiring the fluff may be high due to its biorheological properties. We developed an ichthyoviscometer. It incorporates a freshly killed fish as a viscometer, and we developed it to measure the rheological properties of fluids and suspensions, including fluff, at scales encompassing those in gill ventilation. We have shown that the rheological behaviour of fluff is close to that of a gel with a yield stress strongly dependent on...
Tipo: Text Palavras-chave: Fish; Organic matter; Gill ventilation; Biorheology; Organic fluff; Mud flats.
Ano: 2007 URL: http://archimer.ifremer.fr/doc/2007/publication-2219.pdf
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Zebrafish Danio rerio shows behavioural cross‐context consistency at larval and juvenile stages but no consistency between stages ArchiMer
Alfonso, Sebastien; Peyrafort, Manon; Cousin, Xavier; Bégout, Marie-laure.
Coping style is defined as a set of individual physiological and behavioural characteristics consistent across time and context. In the zebrafish Danio rerio, as well as in many other animals, several covariations have been established between behavioural, physiological, and molecular responses. However, not many studies have addressed the consistency of behavioural responses over time starting at the larval stage. Therefore, we aimed to improve our understanding of behavioural consistency across context and over time in zebrafish from the larval to juvenile stages. We conducted two distinct experiments: a larval stage experiment (from 8 to 21 days post fertilization, dpf) and a juvenile stage experiment (from 21 to 60 dpf). On one hand, the larval...
Tipo: Text Palavras-chave: Coping style; Fish; Personality; Vital staining.
Ano: 2020 URL: https://archimer.ifremer.fr/doc/00614/72598/71598.pdf
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Proteins and proteolytic activity changes during refrigerated storage in sea bass (Dicentrarchus labrax L.) muscle after high-pressure treatment ArchiMer
Cheret, Romuald; Hernandez Andres, Aránzazu; Delbarre Ladrat, Christine; De Lamballerie, Marie; Verrez-bagnis, Veronique.
Contrary to other preservation methods like thermal treatments, high pressure can destroy microorganisms without affecting the nutritional quality, color, or food texture. The firm texture of fish flesh is an important quality parameter. During the refrigerated storage, the tissue becomes softer and the muscle is deteriorated by different proteases. The aim of this study was to study the modification of the fish muscle proteins after high-pressure treatment during the refrigerated storage and to evaluate the effect of high-pressure treatment level on the post-mortem protein changes and enzyme activities. The calpain activity decreased with the high-pressure treatment and evolved differently during the refrigerated storage, depending on the level of...
Tipo: Text Palavras-chave: Cathepsins; Calpains; Sarcoplasmic proteins; Myofibrillar proteins; Post mortem denaturation; High pressure; Fish.
Ano: 2006 URL: http://archimer.ifremer.fr/doc/2006/publication-1708.pdf
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Echantillonnage des debarquements en criee pour l'etude des structures demographiques. Sources de variabilite et optimisation du plan de sondage ArchiMer
Chevalier, Robert.
The author analyzed problems encountered in selecting a sampling design for estimating the age structures of landings. He studied the effects of various factors of variability on the optimal values of the sampling rates. The method used for this analysis could be employed to define an optimal sampling strategy to assess the age structures of landings from fish markets.
Tipo: Text Palavras-chave: Statistical sampling; Fish; Population structure; Age composition; Landing statistics.
Ano: 1985 URL: http://archimer.ifremer.fr/doc/1985/publication-1772.pdf
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Variability in natural behaviour, and observed reactions to an ROV, by mid-slope fish species ArchiMer
Lorance, Pascal; Trenkel, Verena.
The behaviour of eight large benthopelagic fish taxa was analysed using video records collected with an ROV on the mid-slope of the Bay of Biscay. The studied species were roundnose grenadier (Coryphaenoides rupestris), orange roughy (Hoplostethus atlanticus), deep-sea scorpionfish (Trachyscorpia cristulata echinata), and black scabbardfish (Aphanopus carbo), as well as individuals belonging to the families Alepocephalidae, Chimaeridae, and Scyliorhinidae, and to the order Squaliformes. Some of the observed fish were grouped at the family taxonomical level due to visual identification to species being unreliable. Assumed natural (undisturbed) behaviour was categorised in terms of (i) body position with respect to the bottom sea floor, (ii) locomotion and...
Tipo: Text Palavras-chave: ROV; Life strategies; Fish; Diversity; Continental slope; Behaviour; Bay of Biscay.
Ano: 2006 URL: http://archimer.ifremer.fr/doc/2006/publication-1228.pdf
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Correlations between dioxin-like and indicators PCBs: Potential consequences for environmental studies involving fish or sediment ArchiMer
Babut, M.; Miege, C.; Villeneuve, B.; Abarnou, Alain; Duchemin, J.; Marchand, P.; Narbonne, J. F..
Among the numerous PCB congeners, most of the dioxin-like PCBs (DL-PCBs) need to be characterized by hyphenated techniques. It has been shown in several instances that these congeners are well related to the total PCB content in fish. We examined datasets collected mainly in France, on freshwater and marine fish and sediments. A statistical model linking DL- and indicator PCBs was developed for a dataset composed of freshwater fishes, and proved to predict well DL-PCBs from indicator PCBs in all other fish sets, including marine ones. Type II error rates remained low in almost all fish sets. A similar correlation was observed in sediments. Non-dioxin-like PCBs elicit various adverse effects and represent 95% of the total PCBs. A European guideline for them...
Tipo: Text Palavras-chave: Sediment; Fish; Correlations; Indicator PCB; Dioxin like PCB.
Ano: 2009 URL: http://archimer.ifremer.fr/doc/2009/publication-6979.pdf
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Is avoiding full sib matings really worthwhile in a breeding program? ArchiMer
Dupont-nivet, Mathilde; Vandeputte, Marc.
Stochastic simulations were used to compare genetic progress and inbreeding depending on whether full sib matings were allowed or not when applying individual selection. Fifteen selection cycles were considered, using a single pair mating design. Two levels of heritability (h(2)) were studied (0.1; 0.5) as well as four different proportions of selected animals (2, 5, 10 and 20%), four population sizes (1000, 2,000, 4,000 and 10,000 candidates) and two levels of inbreeding depression (0 and 5% decrease of phenotype for 10% increase in inbreeding). Fifty replicates were generated for each set of parameters. The simulations revealed that avoiding full sib matings became less and less relevant as population size and proportion of selected animals increased and...
Tipo: Text Palavras-chave: Selection; Sib mating; Inbreeding; Genetic variability; Stochastic simulations; Fish.
Ano: 2011 URL: http://archimer.ifremer.fr/doc/00035/14587/11952.pdf
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Méthode de dosage du cadmium, du cuivre, du plomb et du zinc dans la chair de poissons ArchiMer
Auger, Dominique.
An analytical technique for cadmium, copper, lead and zinc determination in fish tissue used in monitoring programmes is described. Atomic absorption spectrophotometry on nitric digested samples is performed.
Tipo: Text Palavras-chave: Cadmium; Cuivre; Poisson; Plomb; Zinc; Analyse; Cadmium; Copper; Lead; Zinc; Fish; Determination.
Ano: 1989 URL: https://archimer.ifremer.fr/doc/00489/60059/63343.pdf
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Etat de santé des habitats et peuplements de poissons des atolls d’Entrecasteaux, zone inscrite au Patrimoine Mondial de l’Humanité et Parc naturel de la mer de Corail. Evaluation initiale par stations vidéo rotatives STAVIRO ArchiMer
Schohn, Thomas; Pelletier, Dominique; Carpentier, Liliane.
The AMBIO project conducted a comprehensive video-based baseline assessment of coral reef fish communities and associated habitats in the New Caledonian lagoons. Observation relies on remote unbaited underwater video, using the STAVIRO rotating technique (Pelletier et al. 2012).  This survey was conducted in 2015 in Entrecasteaux Reefs, both located within the Coral Sea Natural Park, and part of World Heritage site. 109 STAVIRO were validated in 9 days, covering the reefs and geomorphological units in the area. Images were analyzed to characterize the habitat surrounding each station, and fishes based on a list of 565 species (Pelletier et al. 2016).  28 indicators were computed and represented on maps (Sextant server). Indicators were analyzed using the...
Tipo: Text Palavras-chave: Biodiversité; Ichtyofaune; Habitat; Vidéo sous-marine; STAVIRO; Evaluation; Suivi; Aire Marine Protégée; Patrimoine mondial; Parc de la mer de Corail; Ecosystème corallien; Nouvelle-Calédonie; Indicateur; Tableau de bord; Cartes; Sextant; PAMPA; Biodiversity; Fish; Habitat; Underwater video; STAVIRO; Monitoring and assessment; Marine Protected Area: Coral Sea Natural Park; World Heritage; Coral reefs; New Caledonia; Indicator; Dashboard; Map; Sextant; PAMPA.
Ano: 2017 URL: http://archimer.ifremer.fr/doc/00406/51760/52357.pdf
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Effect of temperature, volume of ova batches, and addition of a diluent, an antibiotic, oxygen and a protein inhibitor on short-term storage capacities of turbot, Psetta maxima, ova ArchiMer
Suquet, Marc; Chereguini, Olvido; Omnes, Marie-helene; Rasines, Inmaculada; Normant, Yvon; Souto, Isabel; Quemener, Loic.
The effect of different parameters on shea-term storage capacity of turbot ova was assessed over a 45-h period after ova collection for fertilization rates and over a 9-h period after ova collection for hatching rates. Increasing the volume of ova sampling from 0.5 to 2.5 mt, as well as adding an antibiotic-antimicotic solution or oxygen did not significantly change the storage capacity of ova. Regarding the hatching rates, a higher storage ability was recorded at 8 and 13 degrees C, compared to 3 degrees C. The mean composition of the ovarian fluid was determined (n = 57 spawns). Use of a diluent mimicking the ovarian fluid significantly decreased the storage ability as assessed by the fertilization rates but did not modify the hatching rates. Diluting...
Tipo: Text Palavras-chave: Psetta maxima; Turbot; Calcium; Ovarian fluid; Short term storage; Ova; Fish; Psetta maxima; Turbot; Calcium; Liquide ovarien; Conservation à court terme; Ovules; Poisson.
Ano: 1999 URL: http://archimer.ifremer.fr/doc/1999/publication-857.pdf
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Testing Protein Digestibility in Red Grouper Epinephelus Morio using In Vitro and In Vivo Methods ArchiMer
Silva, A. F.; Escalante, Karla; Alvarez-gonzalez, C. A.; Guerrero-olazaran, M.; Cuzon, Gerard; Gaxiola, Gabriela.
The digestibility of pre-selected ingredients was evaluated for Epinephelus morio using pH-stat and multi-enzyme extract (stomach, intestine, and ceca). The degree of hydrolysis (DH) was tested with acid and alkaline proteases using crustacean meals, squid meal, fish protein concentrate (FPC), fish meal, dried whey, as well as canola paste (w/or w/o phytase), soybean meal (w/or w/o phytase), soyprotein concentrate (SPC), and wheat gluten. SPC produced DH values between 3.6-4.1%, obtained from the three different parts of the digestive tract. Canola paste produced high DH in the stomach by adding phytase to 0.8 and 2% feed. This process was repeated under alkaline conditions for DH, with 0.6-2.6% in the pyloric ceca, and 1-2.2% in the intestine. The DH from...
Tipo: Text Palavras-chave: ADC; In vitro digestibility; Enzymes; Fish; Feedstuffs.
Ano: 2014 URL: https://archimer.ifremer.fr/doc/00248/35930/80189.pdf
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Traitement par lagunage a haut rendement algal (LHRA) des effluents piscicoles marins recycles: évaluation chimique et écotoxicologique ArchiMer
Deviller, Genevieve.
World aquaculture is a fast growing activity and the control of its waste becomes a key issue. Compared to traditional systems, recirculating systems allow to reduce replacement water and waste volumes. Nevertheless their effluents are more concentrated in dissolved nutrients (nitrate, phosphate). The high rate algae pond (HRAP) is one of the possible treatment technique to remove those nutrients. During this work, three rearing systems: one recycled, one recycled with HRAP and one open as a standard, were operated for one year to assess the impact of: (1) the reuse of treated effluent on survival, growth and nutrition of sea bass (2) the rearing system on fish health using multibiomarkers and trace metals accumulation responses and (3) best conditions for...
Tipo: Text Palavras-chave: Aquaculture; Fish; Growth; Metals; Biomarker; Water treatment; Recirculating effluent; High rate algal pond; Aquaculture; Poisson; Croissance; Métaux; Biomarqueur; Epuration; Effluent recyclé; Lagunage à haut rendement algal.
Ano: 2003 URL: http://archimer.ifremer.fr/doc/2004/these-163.pdf
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Introduction: status and future of modelling physical-biological interactions during the early life of fishes ArchiMer
Gallego, A; North, E; Petitgas, Pierre.
Modelling physical-biological interactions in the early life of fish is becoming an integral part of theoretical and applied marine ecology. A workshop on 'Advancements in modelling physical-biological interactions in fish early-life history' (WKAMF) was held in April 2006 to review recent developments and identify future research directions. Here we provide an overview of the information presented at WKAMF (some of which is published in this Theme Section), discussions that took place at the workshop, and the authors' perspectives as workshop co-Chairs. The major themes identified at the workshop were the need for enhanced model validation and sensitivity methods and improved understanding of physical and biological processes. Using the appropriate level...
Tipo: Text Palavras-chave: Workshop; Individual based methods; Larvae; Eggs; Fish; Biophysical modelling.
Ano: 2007 URL: http://archimer.ifremer.fr/doc/2007/publication-4311.pdf
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Caractérisation du comportement chimique du complexe otosac-otolithe et réaction à des perturbations induites. ArchiMer
Edeyer, Anaick.
Teleost fish have the capacity to record in their otoliths, calcareous concretions located in the inner ear, the principal events (environmental and physiological) which punctuate their life. Otolith is made of CaC03 deposits on a protein matrix according to a circadian rhythm. Due to the quasi irreversibility of this process, otoliths can be compared to biological archives largely used to apprehend the fish ecology. The otolith bathes in the endolymph, a medium in which all the precursors of otolith formation forward. The endolymph chemical analysis revealed a heterogeneity of its principal components (proteins, total C02 and total Ca) which origin lies in the non uniform spatial distribution of the ionocytes in the saccular epithelium. Thus, in...
Tipo: Text Palavras-chave: Environmental disturbances; Microchemistry; Biomineralisation; Psetta maxima; Fish; Calcification; Endolymph; Otolith; Perturbations environnementales; Microchimie; Biominéralisation; Psetta maxima; Poisson; Calcification; Endolymphe; Otolithe.
Ano: 2000 URL: http://archimer.ifremer.fr/doc/2000/rapport-1123.pdf
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Temporal partitioning of diurnal behavioural patterns of Coris julis and Diplodus vulgaris (Actinopterygii: Perciformes) in Mediterranean coralligenous habitats. ArchiMer
Witkowski, Fanny; Vion, Aurelie; Bouchoucha, Marc.
Background. There is need for more information on behavioural rhythms of fishes in relation to their habitat use in few or not previously monitored areas, such as coralligenous habitats. Some studies have compiled inventories of observable fish species in this habitat, but no studies have been performed on the temporal patterning of fish behaviour, especially at the scale of the day. The presently reported study aims at providing knowledge on finescale fluctuations of abundances and behaviour of two fish species in coralligenous habitats throughout the diurnal period. Materials and methods. Fish fauna was filmed hourly, for several days, from dusk to dawn, with autonomous, programmable, and rotating video systems. Diurnal variations in abundances per...
Tipo: Text Palavras-chave: Activity rhythms; Ethology; Fish; Bioherm; Underwater video.
Ano: 2016 URL: http://archimer.ifremer.fr/doc/00359/47038/46944.pdf
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Heavy metal contamination and hepatic toxicological responses in brown trout (Salmo trutta) from the Kerguelen Islands ArchiMer
Jaffal, Ali; Betoulle, Stephane; Biagianti-risbourg, Sylvie; Terreau, Alexandre; Sanchez, Wilfried; Paris-palacios, Severine.
The Kerguelen Islands include various species of freshwater fish such as brown trout (Salmo trutta). These trout are among the most isolated from direct anthropogenic impact worldwide. This study was designed to analyse cadmium (Cd) and copper (Cu) concentrations in the liver of Kerguelen brown trout, and to assess the possible impacts of these metals on hepatic histopathology and oxidative stress parameters (superoxide dismutase and catalase activity and glutathione levels). Trout were caught in the Chateau River, the Studer Lakes and the Ferme Pond, close to the scientific station of the Kerguelen Islands, corresponding to three morphotypes (river, lake and station). Kerguelen trouts' hepatic concentrations of Cd and Cur were similar to those reported in...
Tipo: Text Palavras-chave: Brown trout; Freshwater; Fish; Sub-Antarctic; Liver; Biomarkers.
Ano: 2015 URL: https://archimer.ifremer.fr/doc/00499/61109/64571.pdf
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Fish as bioindicators of brackish ecosystem health: integrating biomarker responses and target pollutant concentrations ArchiMer
Corsi, I; Mariottini, M; Sensini, C; Lancini, L; Focardi, S.
Biological responses and contaminant levels in biological tissues were investigated in fish specimens of grass goby (Zosterisessor ophiocephalus) collected in spring 2000 in a moderately polluted brackish ecosystem, the Orbetello lagoon (southern coast of Tuscany, Italy). The complexity of harmful effects that contaminants may cause in fish over time was assessed. General condition indices (somatic liver index, and gonadal somatic index), cytochrome P450 enzymes, acetylcholinesterase activity and ovarian morphology were integrated with the content of organochlorines (OCs-hexachlorobenzene, DDTs and polychlorinated biphenyls) in liver and ovaries and p-nonylphenol (NP) and lower ethoxylate (NPE(1-2)) content in muscle and ovaries as well. Samples collected...
Tipo: Text Palavras-chave: Biomarqueurs; Lagunes; Poissons; Histologie des ovaires; Organochlorés; Biomarkers; Lagoon; Fish; Ovarian histology; Organochlorines; Nonylphenols.
Ano: 2003 URL: http://archimer.ifremer.fr/doc/00322/43293/43028.pdf
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A step toward the definition of ecological indicators of the impact of fishing on the fish assemblage of the Abore reef reserve (New Caledonia) ArchiMer
Amand, Marion; Pelletier, Dominique; Ferrari, Jocelyne; Kulbicki, Michel.
Marine Protected Areas (MPA) are often contemplated as a tool for the sustainable management of exploited resources and ecosystem conservation. This paper proposes an approach to establish a statistical diagnostic of the effects of MPAs on fish assemblages, and define corresponding ecological indicators. This requires choosing relevant variables (abundance, diversity, demographic parameters..) and appropriate statistical methods. The study was based on data from the Abore reef Reserve in New Caledonia. Two sets of methods: 1-inferential linear models (ANOVA, GLM): 2- Partial Least Squares (PLS) methods of regression, were used to test the effects of this MPA. PLS enabled us to test simultaneously within a model, density, species richness, biomass and mean...
Tipo: Text Palavras-chave: New Caledonia; PLS regression; Ecological indicators; Fishing impact; Coral reef; Fish; Marine Protected Areas.
Ano: 2004 URL: http://archimer.ifremer.fr/doc/2004/publication-398.pdf
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Comparing growth in surface and cave morphs of the species Astyanax mexicanus: insights from scales ArchiMer
Simon, Victor; Elleboode, Romain; Mahe, Kelig; Legendre, Laurent; Ornelas-garcia, Patricia; Espinasa, Luis; Retaux, Sylvie.
Background Life in the darkness of caves is accompanied, throughout phyla, by striking phenotypic changes including the loss or severe reduction in eyes and pigmentation. On the other hand, cave animals have undergone constructive changes, thought to be adaptive, to survive in this extreme environment. The present study addresses the question of the evolution of growth in caves, taking advantage of the comparison between the river-dwelling and the cave-dwelling morphs of the Mexican tetra, Astyanax mexicanus. Results A sclerochronology approach was undertaken to document the growth of the species in these two very distinct habitats. Scales from 158 wild Astyanax mexicanus specimens were analyzed from three caves (Pachón, Tinaja and Subterráneo) and two...
Tipo: Text Palavras-chave: Cave; Fish; Size; Age; Scales; Growth; Food; Comparative biology; Life history traits.
Ano: 2017 URL: http://archimer.ifremer.fr/doc/00412/52337/53124.pdf
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