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Mise en œuvre opérationnelle de l’outil FlowCAM / ZooPhytoImage dans le cadre de la surveillance REPHY. Action 9 - FlowCAM / ZooPhytoImage - Livrable 2. Rapport final, mars 2015. ArchiMer
Neaud-masson, Nadine; Lefebvre, Alain; Belin, Catherine; Soudant, Dominique.
This deliverable contains the work that was carried out in 2014 for the FlowCAM / ZooPhytoImage tool actually becomes a usable operational tool in the REPHY, and as such, can provide results supplying the assessments of WFD phytoplankton indicator. This deliverable is complementary to the deliverable 1, provided for the same action, entitled « Evolutive version of the operational tool for digitization and semi-automated analysis of phytoplankton images, using the FlowCAM device and the Zoo/PhytoImage software. New perspectives » This deliverable has five parts whose content is summarized below. 1. Work done for operational implementation in 2014 under the REPHY. These tasks affect either the scanning operations of the phytoplankton images by FlowCAM, or...
Tipo: Text Palavras-chave: FlowCAM; ZooPhytoImage; REPHY; Observation phytoplancton; Set d’apprentissage; Littoral français.; FlowCAM; ZooPhytoImage; REPHY; Phytoplankton observation; Training set; French coast..
Ano: 2015 URL: http://archimer.ifremer.fr/doc/00361/47262/47227.pdf
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Eutrophication: A new wine in an old bottle? ArchiMer
Le Moal, Morgane; Gascuel-odoux, Chantal; Menesguen, Alain; Souchon, Yves; Etrillard, Claire; Levain, Alix; Moatar, Florentina; Pannard, Alexandrine; Souchu, Philippe; Lefebvre, Alain; Pinay, Gilles.
Eutrophication is one of the most common causes of water quality impairment of inland and marine waters. Its best-known manifestations are toxic cyanobacteria blooms in lakes and waterways and proliferations of green macro algae in coastal areas. The term eutrophication is used by both the scientific community and public policy-makers, and therefore has a myriad of definitions. The introduction by the public authorities of regulations to limit eutrophication is a source of tension and debate on the activities identified as contributing or having contributed decisively to these phenomena. Debates on the identification of the driving factors and risk levels of eutrophication, seeking to guide public policies, have led the ministries in charge of the...
Tipo: Text Palavras-chave: Eutrophication; Nitrogen; Phosphorus; Algae bloom; Land-sea continuum; Diffuse pollution.
Ano: 2019 URL: https://archimer.ifremer.fr/doc/00456/56734/58551.pdf
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High-resolution underway measurements of phytoplankton photosynthesis and abundance as an innovative addition to water quality monitoring programs ArchiMer
Aardema, Hedy M.; Rijkeboer, Machteld; Lefebvre, Alain; Veen, Arnold; Kromkamp, Jacco C..
Marine waters can be highly heterogeneous both on a spatial and temporal scale, yet monitoring programs currently rely primarily on low-resolution methods. This potentially leads to undersampling. This study explores the potential of two high-resolution methods for monitoring phytoplankton dynamics: fast repetition rate fluorometry for information on phytoplankton photosynthesis and productivity and automated scanning flow cytometry for information on phytoplankton abundance and community composition. These methods were tested in combination with an underway Ferrybox system during four cruises on the Dutch North Sea in April, May, June, and August 2017. The high-resolution methods were able to visualize both the spatial and temporal variability of the...
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Ano: 2019 URL: https://archimer.ifremer.fr/doc/00584/69635/67492.pdf
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Bilan 2004 du réseau REPAMO - Réseau national de surveillance zoosanitaire des mollusques marins ArchiMer
Garcia, Celine; Arzul, Isabelle; Chollet, Bruno; Francois, Cyrille; Goubet, Anne; Joly, Jean-pierre; Miossec, Laurence; Robert, Maeva; Cuvelier, Nicolas; Lefebvre, Alain; Le Gagneur, Eric; Ropert, Michel; Mouillard, Gilbert; Gerla, Daniel; Le Gal, Dominique; Rocher, Gregory; Langlade, Aime; Bedier, Edouard; Nourry, Max; Martin, Jean-louis; Costantini, Louis; Masson, Jean-claude; Martin, Anne-genevieve.
Created in 1986, the REPAMO network (Network of mollusc pathology), is a national zoosanitary surveillance network of shellfish health status along the French coasts. Its activities are in keeping with two European Directives, 91 /67/EEC and 95/70/EC and are a patt of the institutional tasks ofIfremer. The aims of the network are to prevent the introduction and spread of exotic pathogens and to survey the evolution of notifiable pathogens already present in France. The network focused on the survey of listed diseases (bonamiosis and marteiliosis of flat oyster) in two areas under agreement process (Banc de Granville and zone X). In 2004, no sample couId be analysed to these two areas because of the difficulty to obtain flat oysters (sparse oyster beds,...
Tipo: Text Palavras-chave: Réseau; Surveillance; Pathologie; Mollusques; Coquillages; Etat de santé; Network; Surveillance; Pathology; Molluscs; Shellfish; Health status.
Ano: 2005 URL: http://archimer.ifremer.fr/doc/00086/19702/17343.pdf
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Avis de l’Ifremer sur le projet d’arrêté préfectoral portant ouverture sanitaire temporaire de la zone à éclipse n° 62.10 en Baie de Canche / Hardelot-Le Touquet pour le groupe 2. ArchiMer
Lefebvre, Alain; Verin, Francoise.
Avis de l’Ifremer concernant le projet d’arrêté préfectoral portant ouverture sanitaire temporaire de la zone à éclipse n°62.10 Baie de Canche / Hardelot-Le Touquet pour le groupe 2. La zone 62.10 est identifiée comme zone de production dont l’exploitation est soumise à autorisation préalable et sous conditions particulières (zone à éclipse) par arrêté préfectoral portant classement de salubrité des zones de production et de reparcage de coquillages vivants du département du Pas-de-Calais en date du 8 février 2018. Cette zone est non classée. Le suivi des zones à exploitation occasionnelle (dites à éclipses) doit suivre les règles applicables au classement et au suivi de certaines zones de production conchylicoles de l’instruction technique...
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Ano: 2019 URL: https://archimer.ifremer.fr/doc/00499/61081/64538.pdf
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Qualité du Milieu Marin Littoral. Bulletin de la surveillance 2019. Départements du Nord, du Pas‐de‐Calais et de la Somme ArchiMer
Lefebvre, Alain; Devreker, David; Blondel, Camille; Cordier, Remy; Duquesne, Vincent; Hebert, Pascale; Verin, Francoise; Lebon, Fabien.
Ce document constitue une synthèse régionale des principaux résultats acquis par le Laboratoire Environnement et Ressources du centre Ifremer de Boulogne‐sur‐Mer (LER‐BL). Ces résultats concernent les réseaux mis en oeuvre à l’échelle nationale : le REMI (microbiologie), le REPHY (phytoplancton & phycotoxines) et le ROCCH (contaminants chimiques). Les particularités environnementales régionales peuvent mener au déploiement d’autres réseaux ou d’autres études dont les résultats font l’objet d’une valorisation spécifique. C’est le cas des réseaux SRN, IGA et MAREL Carnot sur notre littoral (voir §4. Conditions environnementales). L’amélioration des connaissances passe également par la mise en oeuvre d’études et de recherches dont les objectifs et les...
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Ano: 2020 URL: https://archimer.ifremer.fr/doc/00641/75279/75591.pdf
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Campagne RNOSED 1998 - Analyse de la contamination des sédiments du littoral Nord / Pas-de-Calais / Picardie ArchiMer
Desombre, Julie; Lefebvre, Alain; Bucas, Karenn.
The National Network of Observation (RNO) of the IFREMER is a monitoring network of the quality of the marine environment. This report is interested in the results of series of measurement from the RNO sediment of 1998 and relates to the analysis of the contamination of the coastal sediments from the Belgian coastal zone to Fécamp. Measurements relate to heavy metals and the organic compounds the such Polyaromatic Hydrocarbons (HAP), Polychlorobiphényles (PCB) and pesticides (DDT, Lindane). A statistical processing is carried out starting from the standardized metal contents and of the organic rough contents in order to highlight possible regroupings of intake points per level of pollution. The origins of the contamination given thanks to an inventory of...
Tipo: Text Palavras-chave: Sédiment; RNO; Normalisation; Contaminants; Apports anthropiques; Sediment; RNO; Standardization; Contaminants; Anthropic fluxes.
Ano: 2004 URL: http://archimer.ifremer.fr/doc/00167/27821/26014.pdf
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Surveillance Écologique et Halieutique Site de Gravelines. Novembre 2014 - Octobre 2015 ArchiMer
Antajan, Elvire; Lefebvre, Alain; Loots, Christophe; Rocroy, Mélanie; Ruellet, Thierry.
This is the 38th annual surveillance report concerning the nuclear power plant of Gravelines. Its very high power level results from six plant units located on the shore and is characterised by a cooling system with a coastal surface input and output. The production of electricity began in 1980 and reached maximum in 1986. Surveys concern monitoring of pelagic system (hydrology, microbiology, phytoplankton, and zooplankton), fish populations (larvae and eggs of Sole and Sprat) or crustaceans (shrimps), and benthic macrofauna (intertidal and subtidal). This survey deals with spatial and temporal approaches (i) study of the direct impact by comparison of the input and output seawater stations, (ii) study of medium and long term evolution of the area by...
Tipo: Text Palavras-chave: Centrale nucléaire; Gravelines; Surveillance; Hydrologie; Halieutique; Plancton; Benthos; Microbiologie; Nuclear power plant; Gravelines; Network survey; Hydrology; Fisheries; Plankton; Microbiology; Benthos.
Ano: 2016 URL: http://archimer.ifremer.fr/doc/00332/44313/43879.pdf
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Temporal changes in the phytoplankton community along the French coast of the eastern English Channel and the southern Bight of the North Sea ArchiMer
Hernandez- Farinas, Tania; Soudant, Dominique; Barille, Laurent; Belin, Catherine; Lefebvre, Alain; Bacher, Cedric.
Long-term trends in the phytoplankton community along the French coast of the English Channel and southern Bight of the North Sea were studied and related to physico-chemical factors and large-climatic indices. Phytoplankton and hydrological data were acquired through three transects. Sampling took place between 1992 and 2011 as part of the French Phytoplankton Monitoring Network (REPHY) and the Regional Nutrients Monitoring Network (SRN). Trends in time-series were identified with dynamic linear models tailored to environmental monitoring data characteristics (e.g. irregular sampling frequency, missing data). Temporal and spatial patterns in the phytoplankton community were explained with a partial triadic analysis. Relationships between the phytoplankton...
Tipo: Text Palavras-chave: Climatic indicators; Dynamic linear model; Environmental drivers; Multivariate analysis; Phytoplankton.
Ano: 2014 URL: http://archimer.ifremer.fr/doc/00195/30619/32177.pdf
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Seasonal and longer term trends in sea temperature along the French North Sea coast, 1975 to 2002 ArchiMer
Woehrlings, D; Lefebvre, Alain; Lehoerff, Genevieve; Delesmont, R.
Regular sea temperature measurements have been made since 1975 at Gravelines (French coast of the Southern Bight of the North Sea) within the framework of a research programme aimed at monitoring the influence of the thermal discharge of a nuclear power plant. The sampling has yielded a 28-year time-series. Pluriannual natural fluctuations of temperature show cyclic patterns and long-term trends in good accordance with global climatic changes as revealed by the NAO (North Atlantic Oscillation) annual index.
Tipo: Text Palavras-chave: Fluctuation; Temperature; Long term; Seasonal.
Ano: 2005 URL: http://archimer.ifremer.fr/doc/2005/publication-616.pdf
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Évaluation du descripteur 5 « Eutrophisation » en France métropolitaine. Rapport scientifique pour l’évaluation 2018 au titre de la DCSMM ArchiMer
Devreker, David; Lefebvre, Alain.
This report is the second assessment of French marine water eutrophication status (descriptor 5) done in the framework of the MSFD. The goal of this report is to determine if French marine water reach the Good Ecological State as defined by the MSFD. It stands next to the initial evaluation made in 2012, from which it is an update. It introduces the second cycle of the Marine Environment Action Program. It shows that French marine waters, behind the 12 nm line, reach the GES as defined by the MSFD. Problems link to eutrophication occurs in marine waters above the 12 nm, where 6.5% of the area do not reach the GES.
Tipo: Text Palavras-chave: DCSMM; Eutrophisation; Évaluation; Bon Etat Ecologique; Seuils; Indicateurs; Nutriments; Chlorophylle-a; Oxygène; Turbidité; Macroalgues; Pressions écologiques; MSFD; Eutrophication; Assessment; Good Environmental Status; Thresholds; Indicators; Nutrients; Chlorophyll-a; Oxygen; Turbidity; Macroalgae; Ecological pressures..
Ano: 2018 URL: http://archimer.ifremer.fr/doc/00437/54868/56361.pdf
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Comparaison des résultats obtenus avec différentes techniques d’évaluation du phytoplancton antérieurement à 2013. Action 3. Indice Composition. Livrable n° A II. Rapport final, 13 novembre 2014. ArchiMer
Artigas, Luis Felipe; Didry, Morgane; Lampert, Luis; Broutin, Mathias; Bonato, Simon; Lizon, Fabrice; Lefebvre, Alain.
L'élément de qualité phytoplancton doit être évalué dans le cadre de la Directive Cadre sur L’Eau grâce à trois indices : biomasse, abondance et composition. Les deux premiers indices, biomasse et abondance, ont déjà été définis. L’indice composition a quant à lui fait l'objet d'une proposition précise en Méditerranée, mais pas en Manche - Atlantique. Les travaux antérieurs montrent que la construction d'un indice de composition doit tenir compte de la diversité de l'ensemble du phytoplancton. Or, les comptages microscopiques ne concernent en général que le micro-phytoplancton. Il est donc nécessaire de prendre en compte des informations supplémentaires qui tiennent compte du nano- et du picophytoplancton, dont l'importance dans la diversité du...
Tipo: Text Palavras-chave: Manche Orientale; Groupes phytoplanctoniques; Cytométrie en Flux de type Scanning; Fluorimétrie spectrale; Analyse CHEMTAX; Projet DYMAPHY.
Ano: 2014 URL: http://archimer.ifremer.fr/doc/00361/47258/47223.pdf
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Résultats de la mise en oeuvre des réseaux REPHY et SRN – Zones côtières de la Manche orientale et de la baie sud de la Mer du Nord – Bilan de l’année 2016. ArchiMer
Lefebvre, Alain; Ambiaud, Antonin.
The coastal zone of the Nord – Pas de Calais / Picardie showed dysfonctioning patterns of the ecosystem considered to be link to human activities along shores. These results in regular massive development of species, such as the phytoplanktonic seaweed, Phaeocystis sp. which life cycle was partly linked to nutrients availability and consequently to anthropogenic inputs. As part of the evaluation of the influence of continental inputs on the marine environment (nitrates, phosphates,…) and on potential eutrophication processes, of the estimation of the efficiency of the sewage treatments plants in the possible elimination of dumpings and in order to establish a long-term survey to follow up the change in coastal waters quality, the regional nutrients...
Tipo: Text Palavras-chave: Manche Orientale; Baie sud de la Mer du Nord; Hydrologie; Phytoplancton; Phaeocystis globosa; Eastern English Channel – southern bight of the North Sea; Hydrology; Phytoplankton; Phaeocystis globosa.
Ano: 2017 URL: http://archimer.ifremer.fr/doc/00396/50746/51459.pdf
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Suivi régional des nutriments sur le littoral Nord/Pas De Calais/Picardie-Bilan de l'année 1999 ArchiMer
Meirland, Antoine; Delesmont, Régis; Hitier, Benoist; Lefebvre, Alain; Loquet, Nicolas; Morel, Marc; Olivesi, Rene.
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Ano: 2000 URL: http://archimer.ifremer.fr/doc/00080/19091/16686.pdf
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Which DTW Method Applied to Marine Univariate Time Series Imputation ArchiMer
Phan, Thi-thu-hong; Poisson-caillault, Emilie; Lefebvre, Alain; Bigand, Andre.
Missing data are ubiquitous in any domains of applied sciences. Processing datasets containing missing values can lead to a loss of efficiency and unreliable results, especially for large missing sub-sequence(s). Therefore, the aim of this paper is to build a framework for filling missing values in univariate time series and to perform a comparison of different similarity metrics used for the imputation task. This allows to suggest the most suitable methods for the imputation of marine univariate time series. In the first step, the missing data are completed on various mono-dimensional time series. To fill a missing sub-sequence (gap) in a time series, we first find the most similar sub-sequence to the sub-sequence before (resp. after) this gap according a...
Tipo: Text Palavras-chave: Univariate time series; Missing data; Dynamic Time Warping (DTW); Derivative DTW (DDTW); Dynamic Time Warping-D (DTW-D); Adaptive Feature Based DTW (AF-BDTW); Similarity measures.
Ano: 2017 URL: http://archimer.ifremer.fr/doc/00435/54681/56096.pdf
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Etude sanitaire de la zone 62.07 "Wimereux" - Département du Pas-de-Calais ArchiMer
Verin, Francoise; Devreker, David; Lefebvre, Alain.
La zone de production 62.07 « Wimereux » est classée B pour le groupe 3 des coquillages filtreurs (moules). La zone comprend plusieurs gisements naturels de moules situés sur la commune de Wimereux ainsi qu’une concession de moules à plat. La zone est actuellement suivie à fréquence mensuelle sur deux points de prélèvements situés l’un au sud, l’autre au nord de la commune. Suite aux contraintes liées au dépassement du seuil d’alerte sanitaire sur l’un ou l’autre de ces points mais qui affectent la zone en totalité, la Direction Départementale des Territoires et de la Mer du Pas-de-Calais (DDTM62) a demandé la réalisation d’une étude sanitaire permettant le découpage de la zone de production de coquillages de « Wimereux » en deux zones distinctes. Cette...
Tipo: Text Palavras-chave: Etude sanitaire; Contamination bactériologique des coquillages; Classement sanitaire des zones de production; Moules; Wimereux; Département du Pas-de-Calais.
Ano: 2017 URL: http://archimer.ifremer.fr/doc/00378/48874/49310.pdf
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Croissance de la coque (Cerastoderma edule) en baie de Somme : Morphométrie et Marquage ArchiMer
Bellamy, Elise; Lefebvre, Alain; Mahe, Kelig; De Rafelis, Marc.
The bay of Somme is the first French field of cockles (Cerastoderma edule) with a production amounting to 3000 tons per year on average. In order to improve the stock management, it is necessary to increase our knowledge of this species. This study is looking at the growth of the common cockle. First, was carried out a morphometric analysis of the two left and right valves, which has revealed a perfect symmetry of the shell and has allowed us to establish strong correlations among the morphometric parameters. Then, a chemical marking study has been realized with calcein and manganese in order to obtain the exact growth. Calcein marking has showed a fluorescent stria only for an half hour immersion time at 150 mg.L-1. Likewise, the manganese marking has...
Tipo: Text Palavras-chave: Coque; Cerastoderma edule; Croissance; Baie de Somme; Marquage; Calcéine; Manganèse; Fluorescence; Cathodoluminescence; Cockle; Cerastoderma edule; Growth; Bay of Somme; Marker; Calcein; Manganese; Fluorescence; Cathodoluminescence.
Ano: 2009 URL: http://archimer.ifremer.fr/doc/00007/11815/8542.pdf
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MAREL Carnot. Bilan d’une surveillance à haute fréquence en zone côtière sous influence anthropique (Boulogne-sur-Mer). Bilan 2019. Rapport n°14 ArchiMer
Lefebvre, Alain; Grassi, Kelly.
Installée dans la rade de Boulogne-sur-Mer et inaugurée le 25 novembre 2004, la station MAREL Carnot mesure, toutes les 20 minutes, la salinité, la température de l’eau et de l’air, la fluorescence, la turbidité, la concentration en oxygène dissous, le pourcentage de saturation en oxygène, le P.A.R., l’humidité relative, la direction et la vitesse du vent, la hauteur d’eau et toutes les 12 heures, la concentration en nitrate, en phosphate et en silicium. Ce rapport vise à présenter les principaux éléments utiles à l’utilisateur des données afin de pouvoir adapter son étude en fonction de la disponibilité des données, de leur qualité et, bien entendu, de son objectif. Les résultats des paramètres température, salinité, turbidité, concentration et saturation...
Tipo: Text Palavras-chave: Manche orientale; Boulogne-sur-Mer; Haute fréquence temporelle; MAREL; Hydrologie; Fluorescence.
Ano: 2020 URL: https://archimer.ifremer.fr/doc/00642/75445/76264.pdf
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Surveillance écologique et halieutique du site de Gravelines. Novembre 2012 - Octobre 2013 ArchiMer
Antajan, Elvire; Delesmont, Régis; Foveau, Aurelie; Hervio Heath, Dominique; Lefebvre, Alain; Loots, Christophe; Luczak, Christophe.
This is the 36th annual surveillance report concerning the nuclear power plant of Gravelines. Its very high power level results from six plant units located on the shore and is characterised by a cooling system with a coastal surface input and output. The production of electricity began in 1980 and reached maximum in 1986. Surveys concern monitoring of pelagic system (hydrology, microbiology, phytoplankton, and zooplankton), fish populations (larvae and eggs of Sole and Sprat) or crustaceans (shrimps), and benthic macrofauna (intertidal and subtidal). This survey deals with spatial and temporal approaches (i) study of the direct impact by comparison of the input and output seawater stations, (ii) study of medium and long term evolution of the area by...
Tipo: Text Palavras-chave: Centrale nucléaire; Gravelines; Surveillance; Hydrologie; Halieutique; Plancton – Microbiologie; Benthos; Nuclear power plant; Gravelines; Network survey; Hydrology; Fisheries; Plankton; Microbiology; Benthos.
Ano: 2014 URL: http://archimer.ifremer.fr/doc/00197/30862/29230.pdf
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Finalisation d’un outil préopérationnel FlowCAM / ZooPhytoImage. Action9 - FlowCAM ZooPhytoImage. Livrable n° 3. Rapport final ArchiMer
Wacquet, Guillaume; Lefebvre, Alain; Colas, Florent; Grosjean, Philippe.
Today, the most widely used method for the analysis of samples within the REPHY network, is the microscopy. However, this method has several drawbacks: different skill level depending on the analyst, taxa may be misidentified, analyst subject to fatigue and loss of concentration, non-quantifiable errors. That is why different axis of development have been proposed to adapt the FlowCAM and ZooPhytoImage to the requirements of REPHY network which are the accuracy and repeatability of the measurement. The purpose of these new tools being to provide a tangible gain of time for analysts compared to the observations with optical microscope. The analysis time being a key point of this system, studies were conducted in order to achieve a fast acquisition. To have...
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Ano: 2014 URL: http://archimer.ifremer.fr/doc/00363/47440/47465.pdf
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