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Registros recuperados: 38
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A web-based bioinformatics interface applied to the GENOSOJA project: databases and pipelines Genet. Mol. Biol.
Nascimento,Leandro Costa do; Costa,Gustavo Gilson Lacerda; Binneck,Eliseu; Pereira,Gonçalo Amarante Guimarães; Carazzolle,Marcelo Falsarella.
The Genosoja consortium is an initiative to integrate different omics research approaches carried out in Brazil. Basically, the aim of the project is to improve the plant by identifying genes involved in responses against stresses that affect domestic production, like drought stress and Asian Rust fungal disease. To do so, the project generated several types of sequence data using different methodologies, most of them sequenced by next generation sequencers. The initial stage of the project is highly dependent on bioinformatics analysis, providing suitable tools and integrated databases. In this work, we describe the main features of the Genosoja web database, including the pipelines to analyze some kinds of data (ESTs, SuperSAGE, microRNAs, subtractive...
Tipo: Info:eu-repo/semantics/article Palavras-chave: Bioinformatics; Database; Gene expression; Soybean; Genosoja.
Ano: 2012 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1415-47572012000200002
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Availability of data for the Black Sea climate change research IBSS Repository
Vladymyrov, V..
This review presents a brief analysis and sources (including URLs for the Internet sources) of the most interesting and informative Black Sea oceanographic data sets (excluding satellite data) that are now available for the scientific community with the main attention on the long term data sets. The results of the analysis show that a number of the available Black Sea datasets is growing permanently. However, this process is still rather slow and insufficient. One can hope that new international projects that cover the Black Sea region will drastically improve the situation in nearest years. The attempts should be made as well to create the united reliable quality checked data time series especially for biological data for which long time series do not...
Tipo: Proceedings Paper Palavras-chave: Black Sea; Data; Database; Climate change; Internet.
Ano: 2008 URL: http://repository.ibss.org.ua/dspace/handle/99011/697
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Black Sea Mnemiopsis Leidyi database and plankton check list: online tools developed within the black sea scene project IBSS Repository
Slipetskyy, D.; Sergeyeva, O.; Gorbunov, V.; Vladymyrov, V.; Tezcan, D.; Myroshnychenko, V.; Gucu, A..
Several specific data and information management tools were developed within the EC Black Sea SCENE project for the Black Sea region. They are: (1) Black Sea Mnemiopsis database, (2) Black Sea Phytoplankton checklist, and (3) Black Sea Zooplankton checklist. The tools work on the Web and have simple user friendly interfaces. They will help to the Black Sea scientists to make their work with biological data more effective and productive. The tools are now being tested by the project participants and populated with the corresponding data and information.
Tipo: Proceedings Paper Palavras-chave: Black Sea; Species checklist; Mnemiopsis leidyi; Plankton; Database.
Ano: 2008 URL: http://repository.ibss.org.ua/dspace/handle/99011/695
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Integrated data and information management system to collect and analyze biological data for climate change research IBSS Repository
Sergeyeva, O.; Slipetskyy, D.; Gorbunov, V.; Vladymyrov, V..
The integrated data and information management system (InDIMS) has been developed at the Institute of Biology of the Southern Seas (Sevastopol, Ukraine), The system gives the possibility to have the convenient access to all types of data and information necessary for the effective scientific work including both the data collected within the institute and data form different national and international sources. The system can be used for a number of tasks including the climate change research.
Tipo: Proceedings Paper Palavras-chave: Biological data; Metadata; Database; Internet; Climate change.
Ano: 2008 URL: http://repository.ibss.org.ua/dspace/handle/99011/696
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Sistema computadorizado para estudo de recursos de terra na America Tropical: guia de programacao para usuario. Infoteca-e
CASTRO, N. F. de; COCHRANE, T. T.; MADEIRA NETTO, J. da S..
bitstream/item/101058/1/doc-19.pdf
Tipo: Documentos (INFOTECA-E) Palavras-chave: Regiao Tropical; Classificacao; Informacao; Brasil; América do Sul; América tropical; Armazenamento de informação; Arquivo; Automated infomation; Banco de dados; Database; Information storage; Information system; Natural resource.; Base de Dados; Automação; Computador; Clima; Cerrado; Informática; Programa de Computador; Recurso Natural; Terra.; Solo; Climate; Computer software; Land..
Ano: 1986 URL: http://www.infoteca.cnptia.embrapa.br/infoteca/handle/doc/548537
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Migração de banco de dados Oracle para PostgreSQL. Infoteca-e
SOUZA, E. P. de.
Preparação do ambiente operacional. Processo de migração do SGBD. Otimização de desempenho do PostgreSQL. Criação e restauração de cópias de segurança.
Tipo: Documentos (INFOTECA-E) Palavras-chave: Oracle; PostgreSQL; Database; SGBD; Migraçaõ.
Ano: 2007 URL: http://www.infoteca.cnptia.embrapa.br/infoteca/handle/doc/8504
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Uso de sistema de informações geográficas no mapeamento da produção, produtividade e área plantada de cajueiro na Região Nordeste. Infoteca-e
COSTA, C. A. R.; AGUIAR, M. de J. N.; LIMA, J. B. de.
A cultura do cajueiro tem uma reconhecida importancia como gerandora de ocupacao e renda na Regiao Nordeste, principalmente devido a exploracao da castanha, que se destaca como produto de exportacao; entretanto, a falta de planejamento para o desenvolvimento da cajucultura tem levado, por duas vezes, ao cultivo em areas inadequadas, resultando em indices de produtividade abaixo do esperado; o principal objetivo deste trabalho e a elaboracao de um banco de dados geografico, utilizando um Sistema de Informacoes Geograficas(SIG), para fornecer conhecimentos sobre como se distribuem os indices de producao e produtividade em areas onde ja existe a cultura do cajueiro...
Tipo: Boletim de Pesquisa e Desenvolvimento (INFOTECA-E) Palavras-chave: Banco de dados; Cajucultura; Geographic information system; Database; Cashew culture.; Sistema de Informação Geográfica..
Ano: 1999 URL: http://www.infoteca.cnptia.embrapa.br/infoteca/handle/doc/421970
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Avaliação técnica e financeira da atividade de produção de leite em uma fazenda familiar. Infoteca-e
VELOSO, R. F.; FERNANDES, F. B.; ALMEIDA, P. H. de; CUNHA, M. A. D.; BOATO, F.; RIBEIRO, A. C. F.; MARTINS, M. C.; COLOCA, A. A..
Este trabalho apresenta uma avaliação tecnica e financeira da atividade de producao de leite em uma fazenda do Municipio de Gameleira-GO, regiao sul de Estado de Goias que incorpora, tambem, atividades de producao de graos, de cereais e de tomate industrial irrigado. O trabalho visa tambem a demostrar a importância de um estudo de caso, para avaliacao de novas tecnologias. Com o software Microsoft Acces, desenvoveu-se um sistema de informacoes gerencias, no ambito de uma fazenda. Apresentaram-se os resultados de desmpenho da atividade de producao de leite, bem como propuseram-se melhorias no processo de producao de leite que incluiram: novas opcoes de producao de volumoso e compra de concentrado a granel a menor custo, passiveis de serem adotadas pelo...
Tipo: Boletim de Pesquisa e Desenvolvimento (INFOTECA-E) Palavras-chave: DRURAL100; Producao de leite; Banco de dados; Estudo de caso; Fazenda familiar; Information system; Database; Case study; Family farm; Desenvolvimento rural: Analise tecnico-financeira de sistema de producao.; Administração; Cerrado; Fazenda; Planejamento; Produção Leiteira; Sistema de Informação.; Milk production..
Ano: 2001 URL: http://www.infoteca.cnptia.embrapa.br/infoteca/handle/doc/567098
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MEDAR/MEDATLAS 2002: A Mediterranean and Black Sea database for operational oceanography Elsevier Oceanography Series ArchiMer
Fichaut, Michele; Garcia, Maria-jesus; Giorgetti, Alessandra; Iona, Athanasia; Kuznetsov, Alexander; Rixen, Michel; Medar Group,.
A comprehensive database of temperature, salinity and bio-chemical parameters in the Mediterranean and Black Sea has been constructed through comprehensive co-operation between the bordering countries. Statistical climatologies have been computed with all assembled and quality controlled data. The database, designed to initiate and validate prediction models, also represents a system to quality-check new incoming data produced by ocean observing systems.
Tipo: Text Palavras-chave: Database; Temperature; Salinity; Nutrients; Climatology; Quality control.
Ano: 2003 URL: http://archimer.ifremer.fr/doc/00351/46177/45876.pdf
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A MALDI-TOF MS database for fast identification of Vibrio spp. potentially pathogenic to marine mollusks ArchiMer
Moussa, M.; Cauvin, E.; Le Piouffle, A.; Lucas, O.; Bidault, Adeline; Paillard, Christine; Benoit, F.; Thuillier, B.; Treilles, M.; Travers, Marie-agnes; Garcia, Celine.
In mollusk aquaculture, a large number of Vibrio species are considered major pathogens. Conventional methods based on DNA amplification and sequencing used to accurately identify Vibrio species are unsuitable for monitoring programs because they are time-consuming and expensive. The aim of this study was, therefore, to develop the MALDI-TOF MS method in order to establish a rapid identification technique for a large panel of Vibrio species. We created the EnviBase containing 120 main spectra projections (MSP) of the Vibrio species that are potentially responsible for mollusk diseases, comprising 25 species: V. aestuarianus, V. cortegadensis, V. tapetis and species belonging to the Coralliilyticus, Harveyi, Mediterranei, and Orientalis clades. Each MSP was...
Tipo: Text Palavras-chave: Vibrio; MALDI-TOF MS; Database; Marine mollusk pathogens.
Ano: 2021 URL: https://archimer.ifremer.fr/doc/00680/79224/81732.pdf
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CeDAMar global database of abyssal biological sampling ArchiMer
Stuart, Carol T.; Arbizu, Pedro Martinez; Smith, Craig R.; Molodtsova, Tina; Brandt, Angelika; Etter, Ron J.; Escobar-briones, Elva; Fabri, Marie-claire; Rex, Michael A..
The Census of the Diversity of Abyssal Marine Life (CeDAMar), a division of the Census of Marine Life, has compiled the first comprehensive global database of biological samples taken in the abyssal plains of the world ocean. It is an essential resource for planning future exploration of the abyss, for synthesizing patterns of biogeography and biodiversity, and for environmentally safe exploitation of natural resources. The database is described in this article, and made available to investigators through the CeDAMar website.
Tipo: Text Palavras-chave: Abyssal; Marine benthos; Database; Deep sea; Biodiversity.
Ano: 2008 URL: http://archimer.ifremer.fr/doc/2008/publication-6091.pdf
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Inventory and distribution of tritium in the oceans in 2016 ArchiMer
Oms, Pierre-emmanuel; Bailly Du Bois, Pascal; Dumas, Franck; Lazure, Pascal; Morillon, Mehdi; Voiseux, Claire; Le Corre, Cedric; Cossonnet, Catherine; Solier, Luc; Morin, Pascal.
Tritium concentrations in oceans were compiled from the literature, online databases and original measurements in order to determine the global distribution of tritium concentrations according to latitude and depth in all oceans. The total inventory of tritium decay corrected in 2016 has been estimated using evaluation of the natural and artificial contributions in 23 spatial subdivisions of the total ocean. It is determined equal to 26.8 ± 14 kg including 3.8 kg of cosmogenic tritium. That is in agreement with the total atmospheric input of tritium from nuclear bomb tests and the natural inventory at steady-state estimated from natural production rates in the literature (27.8–29.3 kg in the Earth). We confirm the global increase in tritium according to...
Tipo: Text Palavras-chave: Radionuclide; Tracer; Database; Background concentration.
Ano: 2019 URL: https://archimer.ifremer.fr/doc/00470/58157/60653.pdf
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Effects of Ignoring Survey Design Information for Data Reuse ArchiMer
Foster, Scott D.; Vanhatalo, Jarno; Trenkel, Verena; Schulz, Torsti; Lawrence, Emma; Przeslawski, Rachel; Hosack, Geoffrey R..
Data are currently being used, and reused, in ecological research at an unprecedented rate. To ensure appropriate reuse however, we need to ask the question: “Are aggregated databases currently providing the right information to enable effective and unbiased reuse?” We investigate this question, with a focus on designs that purposefully favour the selection of sampling locations (upweighting the probability of selection of some locations). These designs are common and examples are those designs that have uneven inclusion probabilities or are stratified. We perform a simulation experiment by creating datasets with progressively more uneven inclusion probabilities, and examine the resulting estimates of the average number of individuals per unit area...
Tipo: Text Palavras-chave: Bias; Survey Design; Database; Population Density Estimate; Model; Horvitz‐Thompson; FAIR; Reuse; Data; Inclusion Probability.
Ano: 2021 URL: https://archimer.ifremer.fr/doc/00691/80339/83422.pdf
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Système d'Information Géographique (SIG) au Laboratoire Conchylicole de Poitou-Charentes (LCPC) : exemples d'utilisation et travaux en cours pour l'aide à la gestion spatiale des élevages conchylicoles ArchiMer
Le Moine, Olivier.
The Geographic Information System on the Charentais sounds was one of the first developed by the research group SILLAGE (DEL/AO). The coastal regional shellfish laboratories are pursuing their efforts to enrich and develop the georeferenced databases, to reach a coherent and comprehensive meta-database. The shellfish resarch laboratory of Poitou-Charentes (LCPC) from IFEMER's departrnent of aquaculture resources has developed research themes based upon the GIS use, a powerful tool for spatial analysis. Those programs are commonly developed by ail shellfi sh coastal laboratory at IFREMER's level, prompting us to suggest the applications' transfers to other research units. Various applications and developments using Arc View software were reviewed in this...
Tipo: Text Palavras-chave: Système d'Information Géographique; SIG; Gestion des écosystèmes conchylicoles; Suivis environmentaux en continu; Evaluation de stocks; Base de données; Geographic information system; GIS; Shellfish ecosystem management; In situ continuous environmental monitorings; Stock assessment; Database.
Ano: 2000 URL: http://archimer.ifremer.fr/doc/00031/14234/11510.pdf
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Directive Cadre sur l’Eau : les pressions anthropiques et leur impact sur les indicateurs de l’état écologique des masses d’eau littorales de la façade Manche-Atlantique - Développement d’une base de données quantitatives sur les pressions anthropiques littorales ArchiMer
Buchet, Rémi; Guegan, Cécile.
Within the European water framework directive (WFD), the status assessment of littoral waters is based both on the chemical quality and on the ecological quality of each water body. Quality elements enabling to assess the ecological status of a water body are, among other things, biological quality elements (phytoplankton, macroalgae, angiosperms, benthic invertebrates, fish), for each of which member states have developed quantitative indicators. This document compiles three deliverables of a multi-annual study intended to characterize the sensitivity of these biological indicators regarding the various anthropogenic pressures exerted on the French Atlantic and Channel coast: ultimately, the goal is to establish a quantitative and predictive relationship,...
Tipo: Text Palavras-chave: DCE; Manche-Atlantique; Élément de qualité biologique; Indicateur; Métrique; DPSIR; Pressions anthropiques; Base de données; Forçages naturels; Impact; WFD; Atlantic and Channel coastline; Biological quality element; Indicator; Metric; DPSIR; Anthropogenic pressures; Database; Natural constraints; Impact.
Ano: 2012 URL: http://archimer.ifremer.fr/doc/00346/45723/45351.pdf
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Scénarios d'aménagement des activités de pêche dans la bande cotière bretonne : rapport 2004 ArchiMer
Talidec, Catherine; Daures, Fabienne; Leblond, Emilie; Berthou, Patrick; Guyader, Olivier; Thebaud, Olivier; Peronnet, Isabelle; Boncoeur, J.; Curtil, O.; Martin, A.; Le Floc'H, P.; Travers, M.; Le Lec, G..
This document is the progress report, for the year 2004, of the research programme "Scenarios for Development of Fishing Activity in the Breton Coastal Strip". This programme, co-financed by the Brittany Region within the framework of the XII State/Regional Planning Contract, teams up scientific partners from IFREMER, ENSAR, and UBO (CEDEM). This report consists of four parts: 1. Introduction of the Breton fishing fleet, its characteristics, its activity and its recent history 2. Spatial management of fishing economic activity in the Breton coastal strip 3. Measuring of economic results of Breton professional fishing: Comparison of methods based on accounting data and local surveys 4. Assessment of the economic weight of professional fishing: analysis of...
Tipo: Text Palavras-chave: Allotments; Trawl survey; Database; Spatial assessment; Coastal fishing; Brittany; Cantonnement; Chalutage; Enquêtes; Bases de données; Gestion spatiale; Pêche cotière; Bretagne.
Ano: 2005 URL: http://archimer.ifremer.fr/doc/2005/rapport-2263.pdf
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Genetic catalogue, biological reference collections and online database of European marine fishes ArchiMer
Bautista, José M.; Verrez-bagnis, Veronique; Kourti, Naouma.
Taxonomy and systematics of most animal species have been described in sufficient detail to permit the classification of practically any organism and, in particular, may be of use in the identification of the species and subspecies for the fish trade and ecological concerns regarding fisheries. However, before FishTrace started there was a lack of fast reference tools that hindered the efficient identification and differentiation of teleosts required in fisheries management, biological and ecological research, and human consumption. This problem could affect several of the socio-economic activities related to Fisheries Policies and therefore, the constitution of a database for identification of fish species of commercial, ecological and zoological interest...
Tipo: Text Palavras-chave: Database; Fish; Genetics.
Ano: 2006 URL: http://archimer.ifremer.fr/doc/2006/rapport-6595.pdf
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Scénarios d'aménagment des activités de pêche dans la bande cotière bretonne, rapport 2003 ArchiMer
Talidec, Catherine; Daures, Fabienne; Leblond, Emilie; Lesueur, M.; Boude, J.p..
This document is the progress report, for the third year, of the research programme "Scenarios for Development of Fishing Activity in the Breton Coastal Strip". Co-financed by the Brittany Region within the framework of the XII State/Regional Planning Contract, this programme teams up scientific partners from IFREMER, ENSAR, and UBO (CEDEM). This report is made up of two parts: - The first part is dedicated to the synthesis of the fisheries of Mor Braz. It was a matter of approaching the whole of Mor Braz with the methodology used for the study of customs, resources and space in the Gulf of Morbihan. Following the presentation of fishing activities, the first results on the economic situation of the fleets are explained. - The second part is a legal and...
Tipo: Text Palavras-chave: Database; Ship survey; Licence; Fishing assessment; Fleet; Costal fishing; Brittany; Enquêtes; Bases de données; Navire; Licence; Étude juridique; Flottille; Golfe du Morbihan; Pêcheries cotières; Mor Braz; CPER; Pêche; Bretagne.
Ano: 2004 URL: http://archimer.ifremer.fr/doc/2004/rapport-2262.pdf
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sFDvent: A global trait database for deep‐sea hydrothermal‐vent fauna ArchiMer
Chapman, Abbie S. A.; Beaulieu, Stace E.; Colaço, Ana; Gebruk, Andrey V.; Hilario, Ana; Kihara, Terue C.; Ramirez‐llodra, Eva; Sarrazin, Jozee; Tunnicliffe, Verena; Amon, Diva J.; Baker, Maria C.; Boschen‐rose, Rachel E.; Chen, Chong; Cooper, Isabelle J.; Copley, Jonathan T.; Corbari, Laure; Cordes, Erik E.; Cuvelier, Daphne; Duperron, Sebastien; Du Preez, Cherisse; Gollner, Sabine; Horton, Tammy; Hourdez, Stéphane; Krylova, Elena M.; Linse, Katrin; Lokabharathi, P. A.; Marsh, Leigh; Matabos, Marjolaine; Mills, Susan Wier; Mullineaux, Lauren S.; Rapp, Hans Tore; Reid, William D. K.; Rybakova (goroslavskaya), Elena; A. Thomas, Tresa Remya; Southgate, Samuel James; Stöhr, Sabine; Turner, Phillip J.; Watanabe, Hiromi Kayama; Yasuhara, Moriaki; Bates, Amanda E.; Padolfi, John.
Motivation Traits are increasingly being used to quantify global biodiversity patterns, with trait databases growing in size and number, across diverse taxa. Despite growing interest in a trait-based approach to the biodiversity of the deep sea, where the impacts of human activities (including seabed mining) accelerate, there is no single repository for species traits for deep-sea chemosynthesis-based ecosystems, including hydrothermal vents. Using an international, collaborative approach, we have compiled the first global-scale trait database for deep-sea hydrothermal-vent fauna - sFDvent (sDiv-funded trait database for the Functional Diversity of vents). We formed a funded working group to select traits appropriate to: (a) capture the performance of vent...
Tipo: Text Palavras-chave: Biodiversity; Collaboration; Conservation; Cross-ecosystem; Database; Deep sea; Functional trait; Global-scale; Hydrothermal vent; SFDvent.
Ano: 2019 URL: https://archimer.ifremer.fr/doc/00509/62033/66160.pdf
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Exploration fonctionnelle de gènes différentiellement exprimés entre les souches d'huîtres creuses Crassostrea gigas résistantes et sensibles à la mortalité estivale ArchiMer
Fleury, Elodie.
This work contributed to the development of specific genomic tools for the Pacific oyster Crassostrea gigas, aiming to identify molecular markers associated with summer survival of this species. To do so, 29745 ESTs obtained from different sequencing programs were grouped in a unique database. 9058 unigenes have been used to produce a cDNA microarray, to compare lines selected to be Resistant (R) or Sensitive (S) to summer mortality. 34 genes were observed as differentially expressed before the mortality event. Most of these genes are associated with reproduction and oxidative stress. This underlines the implication of the cost of reproduction and the importance of oxidative stress defenses in development of an immune weakness before the mortality event....
Tipo: Text Palavras-chave: Reproduction; Transforming Growth Factor b; Micorarray; Database; Summer mortality; Bivalves; Reproduction; Transforming Growth Factor b; Puce à ADN; Base de données; Mortalité estivale; Bivalves.
Ano: 2009 URL: http://archimer.ifremer.fr/doc/2009/these-6462.pdf
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