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The influence of the environment on the variability of monthly tuna biomass around a moored, fish-aggregating device ArchiMer
Doray, Mathieu; Petitgas, Pierre; Nelson, Laetitia; Mahevas, Stephanie; Josse, E; Reynal, Lionel.
Fish-aggregating devices (FADs) are increasingly used worldwide to enhance tuna catches. Meanwhile, ecosystem-based management of this fishery is constrained by a paucity of information regarding the interaction of FAD-associated tuna aggregations with their local environment. This paper reports the results of a nine-month study around a FAD moored near Martinique Island, aimed at assessing the effects of the local environment on the variability of monthly estimates of proximate tuna biomass. Dual-frequency, active acoustics provided highresolution quantitative data on the pelagic community around the FAD, from fish to micronekton forage. Geostatistics were used to compute biomass estimates of the tuna aggregation comprising most of the FADassociated fish...
Tipo: Text Palavras-chave: Lesser Antilles; Tuna; Environment; Geostatistics; Biomass estimation; Fish aggregating device.
Ano: 2009 URL: http://archimer.ifremer.fr/doc/2008/publication-6162.pdf
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L'agrégation de thons de sub-surface au sein du système [DCP ancré - macronecton - environnement - pêche] en Martinique : étude hiérarchique par méthodes acoustiques, optiques et halieutiques ArchiMer
Doray, Mathieu.
Artificial Fish Aggregating Devices (FADs) are known to concentrate tropical tunas. This aggregative behaviour drastically increases the vulnerability of these species to fishing. Alternatively, FADs can be used as oceanic observatories to study the aggregative behaviour of large pelagic fish. We conducted sea surveys in Martinique (Lesser Antilles) to i) establish a typology of the pelagic fish aggregations found around moored FADs ii) study their relations with their biotic and abiotic environment and the local fishery. The mean biomass of large pelagic fish aggregations was also estimated to provide scientific inputs to achieve a sustainable management of the moored FAD fishery. The first part presents the background of the study. We introduce the...
Tipo: Text Palavras-chave: Martinique; Lesser Antilles; Hierarchy; Advection diffusion models; Geostatistics; Micronekton; Tuna/environment relationships; Aggregative behaviour; Tuna; Underwater video; Echosounding; FAD; Martinique; Petites Antilles; Hiérarchie; Modèles d'advection diffusion; Géostatistique; Micronecton; Relation thon/environnement; Comportement agrégatif; Thon; Vidéo sous marine; Acoustique; DCP.
Ano: 2006 URL: http://archimer.ifremer.fr/doc/2006/these-1735.pdf
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The spectre of uncertainty in management of exploited fish stocks: The illustrative case of Atlantic bluefin tuna ArchiMer
Fromentin, Jean-marc; Bonhommeau, Sylvain; Arrizabalaga, Haritz; Kell, Laurence T..
The recent overexploitation of East Atlantic and Mediterranean bluefin tuna stock has been well documented in the media where it has become the archetype of overfishing and general mis-management. Beyond the public debate, the crisis also highlighted how the interactions between science and management can change through time according to the awareness of the public opinion. To reflect these issues, the history of Atlantic bluefin tuna overfishing is first described. Then, the major uncertainties that undermine the current scientific advice are summarized and the importance of reducing their impacts by improving knowledge and developing robust scientific framework is considered. The study also discusses how uncertainty was used by different lobbies to...
Tipo: Text Palavras-chave: Overexploitation; Rebuilding; Uncertainty; Management; Scientific diagnosis; Tuna.
Ano: 2014 URL: http://archimer.ifremer.fr/doc/00177/28776/27302.pdf
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Espèces de thonidés d'intérêt potentiel pour l'aquaculture en Méditerranée ArchiMer
Le Gall, Jean-yves.
Bluefin tuna is particularly concerned in the project of tuna rearing in the Mediterranean sea. However there are no reasons to neglect the other tuna species of the Mediterranean sea which present an interesting material for the development of the research on tuna cultivation.
Tipo: Text Palavras-chave: Thon; Aquaculture; Méditerranée; Tuna; Mariculture; Mediterranea.
Ano: 1979 URL: http://archimer.ifremer.fr/doc/00342/45326/44787.pdf
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A geostatistical method for assessing biomass of tuna aggregations around moored fish aggregating devices with star acoustic surveys ArchiMer
Doray, Mathieu; Petitgas, Pierre; Josse, E.
Universal kriging was used to model the spatio-temporal variability in the acoustic density of tuna aggregations recorded during star echosounding surveys around moored fish aggregating devices (FADs) in Martinique (Lesser Antilles). The large-scale deterministic drift in the tuna spatial distribution was modeled using an advection-diffusion equation applied to animal grouping. Residuals from the drift were modeled as a random component with small-scale spatial correlation. An estimation variance formula was derived from this deterministic-statistical mixed model to assess the mean precision of density estimates of daytime tuna aggregation. The mean relative error obtained with our star design for daytime surveys was 24%. The methodology was applied to...
Tipo: Text Palavras-chave: Acoustic survey precision; Advection diffusion model; Moored fish aggregating devices; Tuna; Geostatistics.
Ano: 2008 URL: http://archimer.ifremer.fr/doc/2008/publication-4559.pdf
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Joint use of echosounding, fishing and video techniques to assess the structure of fish aggregations around moored Fish Aggregating Devices in Martinique (Lesser Antilles) ArchiMer
Doray, Mathieu; Josse, E; Gervain, P; Reynal, Lionel; Chantrel, Josselin.
From April 2003 to April 2004 monthly sea surveys were conducted around 2 fish aggregating devices (FADs) moored at 2000 and 2500 m depth in Martinique (Lesser Antilles). The use of a dual frequency splitbeam echosounder combined with an underwater camera and fishing methods allowed assessment of average space and time distribution of pelagic fish aggregated beneath the FADs, as well as identification of their overall size and species composition. At daytime, 4 fish aggregations were identified at each FAD, representing 4 distinct types: i) an aggregation of small juvenile tuna (mean fork length, FL: 30 cm) observed very close to the surface in 25% of daytime periods; ii) a small surface aggregation dominated by carangids, Caranx crysos, present in 65% of...
Tipo: Text Palavras-chave: Lesser Antilles; Tuna; Aggregative behaviour; Small scale fishery; Underwater video; Acoustics; Fish aggregating device.
Ano: 2007 URL: http://archimer.ifremer.fr/doc/2007/publication-3634.pdf
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Resource partitioning within a tropical seabird community: new information from stable isotopes ArchiMer
Cherel, Y; Le Corre, M; Jaquemet, S; Menard, Frederic; Richard, Pierre; Weimerskirch, H.
Characteristics of the tropical oceanic environment (low productivity, little seasonality) and poor diversity of tropical seabird foraging methods and prey relative to temperate and polar species suggest that tropical seabirds overall encompass a narrow range of isotopic niches, with large overlaps among species. To test this hypothesis, we examined the stable carbon (delta C-13) and nitrogen (delta N-15) isotopic composition of blood and feathers of 5 seabird species from Europa Island, Mozambique Channel. While differences were small, blood delta C-13 and delta N-15 values characterized 5 distinct and non-overlapping trophic niches during the breeding period. Seabirds used 2 distinct foraging areas (delta C-13), one used by sooty tern Sterna fuscata and...
Tipo: Text Palavras-chave: Trophic segregation; Tuna; Sooty tern; Pelagic ecosystem; Frigatebird; Booby.
Ano: 2008 URL: http://archimer.ifremer.fr/doc/2008/publication-4675.pdf
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Effect of diets containing tuna head hydrolysates on the survival and growth of shrimp Penaeus vannamei ArchiMer
Nguyen, Thi-my-huong; Perez-galvez, Raul; Berge, Jean-pascal.
A feeding trial was conducted to evaluate the effect of the supplementation of hydrolysates from tuna head on the survival and growth of Penaeus vannamei. To this end, a feeding trial was performed on eleven groups of shrimps of average weight 4.34 g. Every group was distributed into three tanks (30 shrimps per tank of 150 L) and was fed with one of the following eleven diets, all of them containing 40% crude protein: one diet containing tuna head meal as the principal protein source, which was used as control diet; nine diets formulated by replacing 50% tuna head meal by fish protein hydrolysates (FPH), and finally one commercial diet chosen as a reference. FPH were obtained by hydrolysis of tuna head during 2, 3 or 6 h and ulterior centrifugation in order...
Tipo: Text Palavras-chave: Tuna; Head; Fish protein hydrolysates; Growth of shrimp.
Ano: 2012 URL: http://archimer.ifremer.fr/doc/00064/17517/15138.pdf
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Enzymatic Hydrolysis of Yellowfin Tuna (Thunnus albacares) By-Products Using Protamex Protease ArchiMer
Nguyen, Thi-my-huong; Sylla, Khalifa Serigne Babacar; Randriamahatody, Zo; Donnay-moreno, Claire; Moreau, Jacques; Luyen Thi Tran,; Berge, Jean-pascal.
Long-term proteolysis of tuna by-products (head, viscera and tail) by the wide spectrum protease Protamex has been investigated and compared. After hydrolysis, two fractions (soluble aqueous phase and insoluble sludge) were collected. Chemical compositions of each fraction and molecular mass distributions of soluble peptides were determined. Degrees of hydrolysis obtained after 12 h of hydrolysis of head, viscera and tail were 32.3, 16.8 and 22.2 %, respectively. Nitrogen recovery in the soluble fractions was 73.6 % for the head, 82.7 % for the viscera and 85.8 % for the tail. Lipid distribution indicated that the majority of lipids remained in the sludge. Such proteolysis appears useful for the production of very different fractions: one rich in peptides...
Tipo: Text Palavras-chave: Tuna; By-products; Proteolysis; Nitrogen recovery; Fish protein hydrolysates.
Ano: 2011 URL: http://archimer.ifremer.fr/doc/00030/14142/14042.pdf
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Fish aggregation device (FAD) research: gaps in current knowledge and future directions for ecological studies ArchiMer
Dempster, Tim; Taquet, Marc.
We reviewed the literature concerning fish aggregation devices (FADs) to determine areas of relative research deficiency. Using specific searches of the Aquatic Sciences and Fisheries Abstracts ( ASFA) database from 1978 to December 2003 and a classical search of the pre-1978 literature, we collected 407 references on FADs. Publications before 1980 were predominantly peer-reviewed, although non-peer reviewed literature has dominated since 1980, due to the numerous technical reports produced as FADs became more widely used in artisinal and large-scale industrial. sheries in the 1980s. Most studies of the ecology of FAD-associated fish were descriptive, with few mensurative experimental studies and even fewer manipulative experimental studies that tested...
Tipo: Text Palavras-chave: Tuna; Pelagic fish; Literature review; FAD; Fish Aggregation Device; Association.
Ano: 2004 URL: https://archimer.ifremer.fr/doc/2004/publication-721.pdf
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Quantification des bactéries histaminogènes et maîtrise de la formation d'histamine dans les produits marins par biopréservation ArchiMer
Podeur, Gaetan.
Histamine-producing bacteria were isolated from naturally contaminated seafood, some of responsible for histamine-poisoning. At the same time, lactic acid bacteria were isolated on the same products and clustered according to their inhibitory activity against 4 histamine-producing species. Most of the strains were identified as Lactobacillus fuchuensis or Lactobacillus sakei. Twelve lactic acid bacteria were selected for challenge-test on canned, cooked or smoked tuna. Challenge-test combined with sensory analysis performed on cooked vacuum-packed tuna against Morganella psychrotolerans and Morganella morganii, demonstrated an important inhibitory effect on growth and production of histamine with L. sakei CNCM I-4707. Bacterial count was reduced by 3 to 5...
Tipo: Text Palavras-chave: Biopréservation; Thon; Bactérie lactique; Intoxication histaminique; Morganella morganii; Morganella psychrotolerans; Lactobacillus sakei; Analyse sensorielle; PCR en temps réel; Étape d'enrichissement; RT-qPCR; Biopreservation; Tuna; Lactic acid bacteria; Scombroid poisoning; Morganella morganii; Morganella psychrotolerans; Lactobacillus sakei; Sensory analysis; Real-time PCR; Enrichment step; RT-qPCR.
Ano: 2014 URL: https://archimer.ifremer.fr/doc/00241/35203/33709.pdf
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Satellite-linked acoustic receivers to observe behavior of fish in remote areas ArchiMer
Dagorn, L; Pincock, D; Girard, C; Holland, K; Taquet, Marc; Sancho, G; Itano, D; Aumeeruddy, R.
Automated acoustic receivers are now widely used by biologists to study the behavior of fish. However, currently available acoustic receivers require physical recovery of the units to download stored data. Such operation is often difficult in remote study areas like in the open ocean. We present a new satellite-linked acoustic receiver (Vemco VR3-Argos) that allows downloading data through a satellite uplink (Argos). The VR3-Argos can last up to one year, sending GPS positions and tag data at regular time intervals. We illustrate the advantages of this new technology with tagging data from 121 fish of seven species (yellowfin tuna, bigeye tuna, skipjack tuna, wahoo, dolphinfish, silky shark and oceanic triggerfish) caught and released around drifting fish...
Tipo: Text Palavras-chave: Pelagic fish; Tuna; Fish telemetry; Acoustic receiver; FAD.
Ano: 2007 URL: http://archimer.ifremer.fr/doc/2007/publication-3731.pdf
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Impact of increasing deployment of artificial floating objects on the spatial distribution of social fish species ArchiMer
Sempo, Gregory; Dagorn, Laurent; Robert, Marianne; Deneubourg, Jean-louis.
1. Approximately 300 pelagic fish species naturally aggregate around floating objects (FOBs) at the surface of the oceans. Currently, more than 50% of the world catch of tropical tuna comes from the industrial tuna fisheries around drifting FOBs. Greater understanding of the complex decision-making processes leading to this aggregation pattern and the impact of the massive release of artificial FOBs by fishermen on the spatial distribution and management of tuna is needed. 2. We analyse how the interplay between social (relationships between individuals) and non-social (responses to the environment) behaviours may affect the spatial distribution of a population in a multi-FOB environment. Taking the example of tropical tunas associating with FOBs and using...
Tipo: Text Palavras-chave: Behaviour-based modelling; Bycatch; FAD; FOB; Sustainable fishery; Tuna.
Ano: 2013 URL: http://archimer.ifremer.fr/doc/00151/26275/24439.pdf
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Effect of pelagic longline bait type on species selectivity: a global synthesis of evidence ArchiMer
Gilman, Eric; Chaloupka, Milani; Bach, Pascal; Fennell, Hannah; Hall, Martin; Musyl, Michael; Piovano, Susanna; Poisson, Francois; Song, Liming.
Fisheries can profoundly affect bycatch species with ‘slow’ life history traits. Managing bait type offers one tool to control species selectivity. Different species and sizes of marine predators have different prey, and hence bait, preferences. This preference is a function of a bait’s chemical, visual, acoustic and textural characteristics and size, and for seabirds the effect on hook sink rate is also important. We conducted a global meta-analysis of existing estimates of the relative risk of capture on different pelagic longline baits. We applied a Bayesian random effects meta-analytic regression modelling approach to estimate overall expected bait-specific catch rates. For blue shark and marine turtles, there were 34% (95% HDI: 4–59%) and 60% (95%...
Tipo: Text Palavras-chave: Bait; Bycatch; Longline; Mitigation; Selectivity; Tuna.
Ano: 2020 URL: https://archimer.ifremer.fr/doc/00643/75536/76441.pdf
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Development of a qPCR Method for the Identification and Quantification of Two Closely Related Tuna Species, Bigeye Tuna ( Thunnus obesus ) and Yellowfin Tuna ( Thunnus albacares ), in Canned Tuna ArchiMer
Bojolly, Daline; Doyen, Perine; Le Fur, Bruno; Christaki, Urania; Verrez-bagnis, Veronique; Grard, Thierry.
Bigeye tuna (Thunnus obesus) and yellowfin tuna (Thunnus albacares) are among the most widely used tuna species for canning purposes. Not only substitution but also mixing of tuna species is prohibited by the European regulation for canned tuna products. However, as juveniles of bigeye and yellowfin tunas are very difficult to distinguish, unintentional substitutions may occur during the canning process. In this study, two mitochondrial markers from NADH dehydrogenase subunit 2 and cytochrome c oxidase subunit II genes were used to identify bigeye tuna and yellowfin tuna, respectively, utilizing TaqMan qPCR methodology. Two different qPCR-based methods were developed to quantify the percentage of flesh of each species used for can processing. The first one...
Tipo: Text Palavras-chave: Tuna; Authentication; Quantification; Canned products; TaqMan; QPCR; Species identification; Bigeye tuna (Thunnus obesus); Yellowfin tuna (Thunnus albacares).
Ano: 2017 URL: https://archimer.ifremer.fr/doc/00371/48217/48403.pdf
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Characterization of the spoilage potential of pure and mixed cultures of bacterial species isolated from tropical yellowfin tuna ( Thunnus albacares ) ArchiMer
Silbande, A.; Cornet, Josiane; Cardinal, Mireille; Chevalier, Frederique; Rochefort, K.; Smith-ravin, J.; Adenet, S.; Leroi, Francoise.
Aim The spoilage potential of 28 bacterial strains isolated from spoiled raw yellowfin tuna was evaluated. Methods and Results Bacterial species were inoculated in irradiated tuna matrix. Chemical changes, bacterial growth and sensory quality were monitored during aerobic storage at 8°C. Pseudomonas spp., Enterobacter spp. and Escherichia hermanii had no spoiling effect. Brochothrix thermosphacta and Carnobacterium divergens/maltaromaticum developed moderate unpleasant odors. Hafnia paralvei and Serratia spp. released strong off-odors (pyrrolidine, sulfur/cabbage). No bacterial group (except H. paralvei) combined with Pseudomonas spp. deteriorated the sensory quality of tuna. When C. divergens/maltaromaticum was associated with H. paralvei or B....
Tipo: Text Palavras-chave: Bacterial interactions; Bacterial species; Fish; Pseudomonas; Sensory quality; Spoilage potential; Tropical; Tuna.
Ano: 2018 URL: https://archimer.ifremer.fr/doc/00414/52557/53395.pdf
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Acoustic characterisation of pelagic fish aggregations around moored fish aggregating devices in Martinique (Lesser Antilles) ArchiMer
Doray, Mathieu; Josse, Erwan; Gervain, Paul; Reynal, Lionel; Chantrel, Josselin.
Sea cruises were conducted for 57 days over 16 months to characterise pelagic fish aggregations around 2 moored fish aggregating devices (FADs) in Martinique (Lesser Antilles). Echosounder surveys run in a star pattern were used in conjunction with obliquely beamed sonar observations. An echo-integration-by-shoal algorithm was implemented to isolate pelagic fish shoals from sound scattering layers and to compute mean morphometric, positional and density parameters. Tree regressions were used to select and classify pelagic fish Target Strengths (TS), with reference to their spatial and temporal characteristics. The main type of pelagic fish aggregation was a large sub-surface aggregation. It was observed during all daytime periods within a radius of 400 m...
Tipo: Text Palavras-chave: Lesser Antilles; Tuna; Large pelagic fish; Aggregative behaviour; Shoal density; Target Strength; Acoustics; Fish Aggregating Device.
Ano: 2006 URL: http://archimer.ifremer.fr/doc/2006/publication-1734.pdf
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Dosage rapide de l'histamine dans le thon : mise au point, optimisation, applications ArchiMer
Bregeon, Nelly.
After a bibliographic analysis about histamine in tuna and thanks to a high matematical process - the experimental design method - the author has adjusted a quick proportioning method for histamine. The enzymatic technique used in this case requires a microplates reader. It was afterwards valided by comparison with HPLC methode consideres as reference.
Tipo: Text Palavras-chave: Thon Histamine; Plans cxperimentaux; Dosage enzymatiquc; Colorimetre; Test rapide; Tuna; Histamine; Experimental design method; Enzymatic analysis; Spectrophotometry; Quick test.
Ano: 1992 URL: https://archimer.ifremer.fr/doc/00464/57524/59714.pdf
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Gene expression pattern of digestive and antioxidant enzymes during the larval development of reared Atlantic bluefin tuna (ABFT), Thunnus thynnus L. ArchiMer
Mazurais, David; Coves, Denis; Papandroulakis, Nikos; Ortega, Aurelio; Desbruyeres, Elisabeth; Huelvan, Christine; Le Gall, Marie-madeleine; De La Gandara, Fernando; Cahu, Chantal.
The aim of this study was to determine whether mortality observed during the larval development of reared bluefin tuna (Thunnus thynnus) could be related to improper expression profiles of key genes involved in digestive or antioxidant response capabilities. Tuna larvae were sampled at hatching, 2, 5, 10, 15 and 20 dph (days post hatching) for the relative quantification of transcripts encoded by genes involved in digestive [trypsinogen 1 (TRYP1), alpha-amylase (AMY), aminopeptidase N (ANPEP)] and antioxidant [catalase (CAT)] functions. The levels of expression of ANPEP related to the development and maturation of intestinal function increased from 5 to 20 dph. Furthermore, AMY and TRYP1 genes, which are pancreatic enzymes implicated in carbohydrate and...
Tipo: Text Palavras-chave: Tuna; Gene; Expression; Development; Digestion; Antioxidant.
Ano: 2015 URL: https://archimer.ifremer.fr/doc/00171/28264/26521.pdf
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Defining the stock structures of key commercial tunas in the Pacific Ocean II: Sampling considerations and future directions ArchiMer
Moore, Bradley R.; Adams, Tim; Allain, Valerie; Bell, Johann D.; Bigler, Mark; Bromhead, Don; Clark, Sangaa; Davies, Campbell; Evans, Karen; Faasili, Ueta; Farley, Jessica; Fitchett, Mark; Grewe, Peter M.; Hampton, John; Hyde, John; Leroy, Bruno; Lewis, Antony; Lorrain, Anne; Macdonald, Jed I.; Marie, Amandine D.; Minte-vera, Carolina; Natasha, Janice; Nicol, Simon; Obregon, Pablo; Peatman, Thomas; Pecoraro, Carlo; Phillip, N. Bradley; Pilling, Graham M.; Rico, Ciro; Sanchez, Caroline; Scott, Robert; Scutt Phillips, Joe; Stockwell, Brian; Tremblay-boyer, Laura; Usu, Thomas; Williams, Ashley J.; Smith, Niamh.
Delineating the stock structure of highly-mobile, wide-ranging fishes subject to exploitation is a challenging task, yet one that is fundamental to optimal fisheries management. A case in point are stocks of skipjack tuna (Katsuwonus pelamis), yellowfin tuna (Thunnus albacares), bigeye tuna (Thunnus obesus) and albacore tuna (Thunnus alalunga) in the Pacific Ocean, which support important commercial, artisanal, subsistence, and recreational fisheries, and contribute roughly 70 % of global commercial tuna catches. Although some spatial and temporal structuring is recognised within these stocks, growing evidence from a range of approaches suggests that the stock structure of each tuna species is more complex than is currently assumed in both stock assessment...
Tipo: Text Palavras-chave: Tuna; Pacific Ocean; Movement; Spatial dynamics; Stock structure; Fisheries management.
Ano: 2020 URL: https://archimer.ifremer.fr/doc/00630/74168/73773.pdf
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