Data/hora: 04/06/2024 18:59:55

Provedor de dados: | 74
País: | Brazil
Título: | A web-based bioinformatics interface applied to the GENOSOJA project: databases and pipelines
Autores: | Nascimento,Leandro Costa do; Costa,Gustavo Gilson Lacerda; Binneck,Eliseu; Pereira,Gonçalo Amarante Guimarães; Carazzolle,Marcelo Falsarella.
Data: | 2012-01-01
Ano: | 2012
Palavras-chave: | Bioinformatics; Database; Gene expression; Soybean; Genosoja.
Resumo: | The Genosoja consortium is an initiative to integrate different omics research approaches carried out in Brazil. Basically, the aim of the project is to improve the plant by identifying genes involved in responses against stresses that affect domestic production, like drought stress and Asian Rust fungal disease. To do so, the project generated several types of sequence data using different methodologies, most of them sequenced by next generation sequencers. The initial stage of the project is highly dependent on bioinformatics analysis, providing suitable tools and integrated databases. In this work, we describe the main features of the Genosoja web database, including the pipelines to analyze some kinds of data (ESTs, SuperSAGE, microRNAs, subtractive cDNA libraries), as well as web interfaces to access information about soybean gene annotation and expression.
Tipo: | Info:eu-repo/semantics/article
Idioma: | Inglês
Identificador: | http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1415-47572012000200002
Editor: | Sociedade Brasileira de Genética
Relação: | 10.1590/S1415-47572012000200002
Formato: | text/html
Fonte: | Genetics and Molecular Biology  v.35 n.1 suppl.1 2012
Fonte: | info:eu-repo/semantics/openAccess