Consulta: subjectFacets:"Genome sequence"
Registros recuperados: 6
Data/hora: 16/06/2024 04:50:25

Complete sequence of the genome of the human isolate of Andes virus CHI-7913: comparative sequence and protein structure analysis
Provedor de dados: 48
Autores: TISCHLER,NICOLE D; FERNÁNDEZ,JORGE; MÜLLER,ILSE; MARTÍNEZ,RODRIGO; GALENO,HÉCTOR; VILLAGRA,ELIECER; MORA,JUDITH; RAMÍREZ,EUGENIO; ROSEMBLATT,MARIO; VALENZUELA,PABLO D.T.
We report here the complete genomic sequence of the Chilean human isolate of Andes virus CHI-7913. The S, M, and L genome segment sequences of this isolate are 1,802, 3,641 and 6,466 bases in length, with an overall GC content of 38.7%. These genome segments code for a nucleocapsid protein of 428 amino acids, a glycoprotein precursor protein of 1,138 amino acids and a RNA-dependent RNA polymerase of 2,152 amino acids. In addition, the genome also has other ORFs coding for putative proteins of 34 to 103 amino acids. The encoded proteins have greater than 98% overall similarity with the proteins of Andes virus isolates AH-1 and Chile R123. Among other sequenced Hantavirus, CHI-7913 is more closely related to Sin Nombre virus, with an overall protein...
Tipo: Journal article
Palavras-chave: Hantavirus; Genome sequence; RNA polymerase; Human isolate.
Ano: 2003
URL: http://www.scielo.cl/scielo.php?script=sci_arttext&pid=S0716-97602003000200010

Genome sequence of Streptomyces mangrovisoli MUSC 149T isolated from intertidal sediments
Provedor de dados: 58
Autores: Ser,Hooi-Leng; Tan,Wen-Si; Ab Mutalib,Nurul-Syakima; Yin,Wai-Fong; Chan,Kok-Gan; Goh,Bey-Hing; Lee,Learn-Han.
ABSTRACT As the largest genus in Actinobacteria family, Streptomyces species have the ability to synthesize numerous compounds of diverse structures with bioactivities. Streptomyces mangrovisoli MUSC 149T was previously isolated as a novel streptomycete from mangrove forest in east coast of Peninsular Malaysia. The high quality draft genome of MUSC 149T comprises 9,165,825 bp with G + C content of 72.5%. Through bioinformatics analysis, 21 gene clusters identified in the genome were associated with the production of bioactive secondary metabolites. The presence of these biosynthetic gene clusters in MUSC 149T suggests the potential exploitation of the strain for production of medically important compounds.
Tipo: Info:eu-repo/semantics/article
Palavras-chave: Genome sequence; Streptomyces; Mangrove; AntiSMASH; Bioinformatics analysis.
Ano: 2018
URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1517-83822018000100013

Complete genome sequence of human pathogen Kosakonia cowanii type strain 888-76T
Provedor de dados: 58
Autores: Yang,Xue-Jing; Wang,Sai; Cao,Jun-Min; Hou,Jia-Hui.
ABSTRACT Kosakonia cowanii type strain 888-76T is a human pathogen which was originally isolated from blood as NIH group 42. In this study, we report the complete genome sequence of K. cowanii 888-76T. 888-76T has 1 chromosome and 2 plasmids with a total genome size of 4,857,567 bp and C+G 56.15%. This genome sequence will not only help us to understand the virulence features of K. cowanii 888-76T but also provide us the useful information for the study of evolution of Kosakonia genus.
Tipo: Info:eu-repo/semantics/article
Palavras-chave: Kosakonia cowanii; Genome sequence; Antibiotic resistance.
Ano: 2018
URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1517-83822018000100016

Draft genome sequence of Vitellibacter aquimaris D-24T isolated from seawater
Provedor de dados: 58
Autores: Thevarajoo,Suganthi; Selvaratnam,Chitra; Chan,Kok-Gan; Goh,Kian Mau; Chong,Chun Shiong.
ABSTRACT Vitellibacter aquimaris D-24T (=KCTC 42708T = DSM 101732T), a halophilic marine bacterium, was isolated from seawater collected from Desaru beach, Malaysia. Here, we present the draft genome sequence of D-24T with a genome size of approximately 3.1 Mbp and G + C content of 39.93%. The genome of D-24T contains genes involved in reducing a potent greenhouse gas (N2O) in the environment and the degradation of proteinaceous compounds. Genome availability will provide insights into potential biotechnological and environmental applications of this bacterium.
Tipo: Info:eu-repo/semantics/article
Palavras-chave: Vitellibacter aquimaris; Genome sequence; Denitrification; Proteases.
Ano: 2018
URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1517-83822018000100010

Genome sequence of Streptomyces gilvigriseus MUSC 26T isolated from mangrove forest
Provedor de dados: 58
Autores: Ser,Hooi-Leng; Tan,Wen-Si; Mutalib,Nurul-Syakima Ab; Yin,Wai-Fong; Chan,Kok-Gan; Goh,Bey-Hing; Lee,Learn-Han.
Abstract Streptomycetes remain as one of the important sources for bioactive products. Isolated from the mangrove forest, Streptomyces gilvigriseus MUSC 26T was previously characterised as a novel streptomycete. The high quality draft genome of MUSC 26T contained 5,213,277 bp with G + C content of 73.0%. Through genome mining, several gene clusters associated with secondary metabolites production were revealed in the genome of MUSC 26T. These findings call for further investigations into the potential exploitation of the strain for production of pharmaceutically important compounds.
Tipo: Info:eu-repo/semantics/article
Palavras-chave: Genome sequence; Streptomyces gilvigriseus; Mangrove; AntiSMASH; Neuroprotective.
Ano: 2018
URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1517-83822018000200207

Genome-wide identification and phylogenetic analysis of the ERF gene family in cucumbers
Provedor de dados: 74
Autores: Hu,Lifang; Liu,Shiqiang.
Members of the ERF transcription-factor family participate in a number of biological processes, viz., responses to hormones, adaptation to biotic and abiotic stress, metabolism regulation, beneficial symbiotic interactions, cell differentiation and developmental processes. So far, no tissue-expression profile of any cucumber ERF protein has been reported in detail. Recent completion of the cucumber full-genome sequence has come to facilitate, not only genome-wide analysis of ERF family members in cucumbers themselves, but also a comparative analysis with those in Arabidopsis and rice. In this study, 103 hypothetical ERF family genes in the cucumber genome were identified, phylogenetic analysis indicating their classification into 10 groups, designated I to...
Tipo: Info:eu-repo/semantics/article
Palavras-chave: Cucumis sativus L.; ERF; Phylogenetic analysis; Transcription factor; Genome sequence.
Ano: 2011
URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1415-47572011000400015