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| Sun, Ying; Debeljak, Pavla; Obernosterer, Ingrid. |
| Marine microbes are major drivers of all elemental cycles. The processing of organic carbon by heterotrophic prokaryotes is tightly coupled to the availability of the trace element iron in large regions of the Southern Ocean. However, the functional diversity in iron and carbon metabolism within diverse communities remains a major unresolved issue. Using novel Southern Ocean meta-omics resources including 133 metagenome-assembled genomes (MAGs), we show a mosaic of taxonomy-specific ecological strategies in naturally iron-fertilized and high nutrient low chlorophyll (HNLC) waters. Taxonomic profiling revealed apparent community shifts across contrasting nutrient regimes. Community-level and genome-resolved metatranscriptomics evidenced a moderate... |
| Tipo: Text |
Palavras-chave: Metagenomics; Microbial biooceanography; Microbial ecology. |
| Ano: 2021 |
URL: https://archimer.ifremer.fr/doc/00693/80483/83626.pdf |
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| Debeljak, Pavla; Toulza, Eve; Beier, Sara; Blain, Stephane; Obernosterer, Ingrid. |
| Iron (Fe) is a limiting nutrient in large regions of the ocean, but the strategies of prokaryotes to cope with this micronutrient are poorly known. Using a gene‐specific approach from metatranscriptomics data, we investigated 7 Fe‐related metabolic pathways in microbial communities from High Nutrient Low Chlorophyll and naturally Fe‐fertilized waters in the Southern Ocean. We observed major differences in the contribution of prokaryotic groups at different taxonomic levels to transcripts encoding Fe uptake‐mechanisms, intracellular Fe storage and replacement, and Fe‐related pathways in the tricarboxylic acid (TCA) cycle. The composition of the prokaryotic communities contributing to the transcripts of a given Fe‐related pathway was overall independent of... |
| Tipo: Text |
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| Ano: 2019 |
URL: https://archimer.ifremer.fr/doc/00488/59921/63113.eps |
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| Christaki, Urania; Gueneugues, Audrey; Liu, Yan; Blain, Stéphane; Catala, Philippe; Colombet, Jonathan; Debeljak, Pavla; Jardillier, Ludwig; Irion, Solène; Planchon, Frederic; Sassenhagen, Ingrid; Sime Ngando, Telesphore; Obernosterer, Ingrid. |
| Spatial and seasonal dynamics of microbial loop fluxes were investigated in contrasting productivity regimes in the Indian sector of the Southern Ocean. Observations carried out in late summer (February–March 2018; project MOBYDICK) revealed higher microbial biomasses and fluxes in the naturally iron‐fertilized surface waters of Kerguelen island in comparison to surrounding off‐plateau waters. Differences were most pronounced for bacterial heterotrophic production (2.3‐fold), the abundance of heterotrophic nanoflagellates (HNF; 2.7‐fold). Independent of site, grazing by HNF was the main loss process of bacterial production (80–100%), while virus‐induced mortality was low (< 9%). Combining these results with observations from previous investigations... |
| Tipo: Text |
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| Ano: 2021 |
URL: https://archimer.ifremer.fr/doc/00649/76109/77064.pdf |
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