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Blow Your Nose, Shrimp! Unexpectedly Dense Bacterial Communities Occur on the Antennae and Antennules of Hydrothermal Vent Shrimp ArchiMer
Zbinden, Magali; Gallet, Alison; Szafranski, Kamil M.; Machon, Julia; Ravaux, Juliette; Leger, Nelly; Duperron, Sebastien.
In crustaceans, as in other animals, perception of environmental cues is of key importance for a wide range of interactions with the environment and congeners. Chemoreception involves mainly the antennae and antennules, which carry sensilla that detect water-borne chemicals. The functional importance of these as exchange surfaces in the shrimp's sensory perception requires them to remain free of any microorganism and deposit that could impair the fixation of odorant molecules on sensory neurons. We report here the occurrence of an unexpected dense bacterial colonization on surface of the antennae and antennules of four hydrothermal vent shrimp species. Microscopic observation, qPCR and 16S rRNA barcoding reveal the abundance, diversity and taxonomic...
Tipo: Text Palavras-chave: Hydrothermal; Shrimp; Alvinocarididae; Chemosensory perception; Antennules; Bacteria; Grooming.
Ano: 2018 URL: https://archimer.ifremer.fr/doc/00484/59527/62507.pdf
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Caloranaerobacter azorensis gen. nov., sp nov., an anaerobic thermophilic bacterium isolated from a deep-sea hydrothermal vent ArchiMer
Wery, Nathalie; Moricet, Jean-marc; Cueff, Valerie; Jean, Joelle; Pignet, Patricia; Lesongeur, Francoise; Cambon-bonavita, Marie-anne; Barbier, Georges.
A thermophilic, anaerobic, chemo-organotrophic bacterium, designated MV1087(T), was isolated from a deep-sea hydrothermal chimney sample collected from the Mid-Atlantic Ridge. The cells were straight, motile and stained Gram-negative. Growth was observed from 45 to 65 degreesC, with an optimum around 65 degreesC. No growth was observed at 40 or 70 degreesC. Growth was observed from pH 5.5 to 9.0 and the optimum pH was around 7. The salinity range for growth was 10-100 g sea salt l(-1) (corresponding to 6.5-65 g NaCl l(-1)) with an optimum at 30 g sea salt l(-1) (20 g NaCl l(-1)). Strain MV1087(T) was heterotrophic, able to ferment proteinaceous substrates, such as brain/heart infusion and gluten, and carbohydrates, such as glucose, xylan and starch. The...
Tipo: Text Palavras-chave: Thermophile; Deep sea vent; Caloranaerobacter azorensis; Caloranaerobacter; Bacteria.
Ano: 2001 URL: http://archimer.ifremer.fr/doc/2001/publication-586.pdf
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Capacidade diazotrófica de bactérias associativas isoladas de Tripogon spicatus em meios com diferentes fontes de carbono. Repositório Alice
SOUZA, L. S. B. de; NUNES, I. A.; MARINHO, R. de C. N.; GAVA, C. A. T.; AIDAR, S. de T.; FERNANDES JUNIOR, P. I..
O objetivo desse trabalho foi avaliar a capacidade de fixação do nitrogênio em condições microaerofílicas de bactérias diazotróficas isoladas de T. spicatus em meio de cultura suplementados com diferentes fontes de C.
Tipo: Parte de livro Palavras-chave: Fixação biológica; Diversidade.; Solo; Bacteria; Inoculante; Nitrogênio.; Soil.
Ano: 2013 URL: http://www.alice.cnptia.embrapa.br/alice/handle/doc/972799
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Capacité des moules dans la réduction des teneurs en nutriments et la charge bactérienne dans les effluents piscicoles OceanDocs
Chebil Ajjabi, L.; Romdhane, M.S.; El Abed, A..
L’effluent des élevages de poissons renferme des concentrations plus élevées en nutriments dissous et en particules en suspension que celles présentes dans l’eau entrante. Cet état entraine par conséquent, des problèmes d’ordre environnementaux affectant les eaux côtières dues à l’eutrophisation et l’augmentation de la turbidité. Afin d’améliorer la qualité de l’effluent avant son déversement dans le milieu naturel, l’utilisation des bivalves comme filtre biologique est une alternative adéquate. Cette étude analyse la capacité de la moule Mytilus galloprovincialis de réduire les teneurs en sels nutritifs et la charge bactérienne dans les effluents de loups Dicentrarchus labrax en élevage. L’effluent issu des bassins de grossissement est pompé directement...
Tipo: Journal Contribution Palavras-chave: Aquaculture effluents; Bacteria; Biofilters; Chlorophylls; Chlorophylls; Culture effects; Density; Effluents; Filtration; Fish; Mussel culture; Nitrogen; Nutrients (mineral); Phosphorus; Suspended particulate matter; Wastewater recycling; Wastewater treatment; Water quality; Fish; Nitrogen; Phosphorus; Water quality; Mussels; Nutrients; Bacteria; Chlorophylls; Density; Effluents; Filtration; Wastewater treatment.
Ano: 2008 URL: http://hdl.handle.net/1834/3756
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Capacité des moules dans la réduction des teneurs en nutriments et la charge bactérienne dans les effluents piscicoles OceanDocs
Romdhane, M.S.; Chebil Ajjabi, L.; El Abed, O..
L’effluent des élevages de poissons renferme des concentrations plus élevées en nutriments dissous et en particules en suspension que celles présentes dans l’eau entrante. Cet état entraine par conséquent, des problèmes d’ordre environnementaux affectant les eaux côtières dues à l’eutrophisation et l’augmentation de la turbidité. Afin d’améliorer la qualité de l’effluent avant son déversement dans le milieu naturel, l’utilisation des bivalves comme filtre biologique est une alternative adéquate. Cette étude analyse la capacité de la moule Mytilus galloprovincialis de réduire les teneurs en sels nutritifs et la charge bactérienne dans les effluents de loups Dicentrarchus labrax en élevage. L’effluent issu des bassins de grossissement est pompé directement...
Tipo: Journal Contribution Palavras-chave: Aquaculture effluents; Bacteria; Biofilters; Chlorophylls; Culture effects; Density; Effluents; Filtration; Fish; Mussel fisheries; Nitrogen; Nutrients (mineral); Phosphorus; Suspended particulate matter; Wastewater treatment; Water quality; Mytilus galloprovincialis; Wastewater treatment; Mussels; Nutrients; Http://aims.fao.org/aos/agrovoc/c_31155; Http://aims.fao.org/aos/agrovoc/c_25312; Http://aims.fao.org/aos/agrovoc/c_5010; Http://aims.fao.org/aos/agrovoc/c_5274.
Ano: 2008 URL: http://hdl.handle.net/1834/4154
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Caractérisation de la virulence d'une souche de Vibrio aestuarianus, pathogène de l'huître Crassostrea gigas ArchiMer
Labreuche, Yannick.
In France. shellfish production is a traditional. well-established industry. mainly based upon commercial farming of the Pacifie oyster. Crassostrea gigas. Since the 1980's, annual mass mortalities of C. gigas have been reported during summer. Several studies on this subject have demonstrated that these mortality outbreaks resulted from complex interactions between the physiologieal andJor genetic status of the oysters. environmental factors, and one or more infectious agents, among which are bacteria of the genus Vibrio.
Tipo: Text Palavras-chave: Huître; Crassostrea gigas; Bactéries; Vibrio aestuarlanus; Pathogénicité; Produits extracellulaires; Métalloprotéase; Hémocytes; Interactions hôte/pathogène; Oyster; Crassostrea gigas; Bacteria; Vibrio aestuarianus; Pathogenicity; Extracellular products; Metalloprotease; Hemocytes; Host/pathogen interactions.
Ano: 2006 URL: http://archimer.ifremer.fr/doc/00034/14561/11859.pdf
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Caractérisation préliminaire à partir de la lagune de Bizerte (Tunisie) des bactéries tolérantes aux hydrocarbures aromatiques polycliques (HAPS) OceanDocs
Duran, R.; El Bour, M.; Ben Said, O.; Goni, M. S.; Dalleli, M.; Aissa, P..
م إنجاز هذه الدراسة لهدف عَزَلَ بَكْتِيريَا قادرة على استعمالتم إنجاز هذه الدراسة لهدف عَزَلَ بَكْتِيريَا قادرة على استعمال الهيدروكربنات و مقاومة للمعادن والمضادات الحيوية و في هذا الإطار تم أخذ عينات من الماء و التربة على مستوى 16محطة موزعة ببحيرة بنزرت. كما تم عزل البكتيريا بطريقة الإثراء باستعمال وسط مائي معدني زائد هيدروكربنات (fluoranthène) وقد توصلنا في عملية أولية من عزل 130 من الأجذال المختلفة من البكتيريا والتي تم تعريفها عبر الخاصيات الشكلية و البيوكيميائية. وأثبتت النتائج الأولية أن البكتيريا القادرة على استعمال الهيدروكربنات تنتمي لمجموعات مختلفةGram – و Gram+ على التَّوَالِي بنسبتي 65% و 35 %. وتضم مجموعة البكتيريا من نوع العصيات Gram – أكبر عدد من الأجذال المعزولة (74 %). ختاما نشير أن دراسة قدرة الأجذال على مقاومة المعادن...
Tipo: Journal Contribution Palavras-chave: Bacteria; Antibiotics; Biodegradation; Control resistance; Heavy metals; Hydrocarbons; Pollution monitoring; Antibiotics; Biodegradation; Heavy metals; Hydrocarbons; Http://aims.fao.org/aos/agrovoc/c_492; Http://aims.fao.org/aos/agrovoc/c_9261; Http://aims.fao.org/aos/agrovoc/c_2223; Http://aims.fao.org/aos/agrovoc/c_3719.
Ano: 2007 URL: http://hdl.handle.net/1834/4257
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Caracterização bioquímica de bactérias isoladas de coroa de frade (melocactus sp.) no Semiárido Pernambucano. Repositório Alice
ANTUNES, G. dos R.; SANTOS, J. M. R.; SILVA, T. R. da; CARVALHO, B. R.; FERNANDES JUNIOR, P. I..
Objetivou-se avaliar a produção de ácido indol-acético de bactérias, isoladas a partir da Coroa de frade (Melocactus sp.). Para as avaliações foram coletadas três amostras de raízes de Coroa de Frade (Melocactus sp.) de duas áreas diferentes. O isolamento das bactérias, as raízes foram lavadas e, desinfestadas. As amostras foram fragmentadas e diluídas, em meio semissólido BMGM e aqueles que desenvolveram película foram considerados positivos para determinação das populações de bactérias diazotróficas e foram purificadas em placas de Petri contendo meio Dyg's. Posteriormente foi realizada a caracterização bioquímica dos isolados, avaliando a produção do ácido indol-acético. Todos os 38 isolados foram capazes de produzir AIA ?in vitro? na presença e...
Tipo: Parte de livro Palavras-chave: Cora de frade; Ácido indol-3-acético; Bioma caatinga; Cactáceas; Planta da Caatinga; Fixação de Nitrogênio; Bacteria; Raiz; Recurso Natural; Melocactus.
Ano: 2017 URL: http://www.alice.cnptia.embrapa.br/alice/handle/doc/1085139
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Caracterização molecular da dinâmica de grupos bacterianos durante a transição entre área nativa e cultivada de um Argissolo da Caatinga do Sertão pernambucano. Repositório Alice
MELO, A. L. de; GOUVEIA, G. V.; GOUVEIA, J. J. de; MELO, N. F. de; COSTA, M. M. da; MELO, A. M. Y. de.
Buscou-se conhecer a estrutura e as mudanças ocorridas na comunidade microbiana edáfica de uma área de argissolo do Vale do São Francisco que passou de área nativa à cultivada.
Tipo: Parte de livro Palavras-chave: Micro-organismos.; Caatinga; Biodiversidade; Solo; Bacteria; Genética; Matéria Orgânica..
Ano: 2016 URL: http://www.alice.cnptia.embrapa.br/alice/handle/doc/1057551
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Caracterização molecular de bactérias promotoras do crescimento vegetal isoladas de milho por meio da amplificação do Gene nifH perfis de ARDRA. Repositório Alice
SILVA, T. R. da; OLIVEIRA, K. G. de; NASCIMENTO, T. R. do; CAVALCANTI, M. I. P; FRAIZ, A. C. R.; FERNANDES JUNIOR, P. I..
Há poucas informações a respeito da diversidade e do potencial biotecnológico dos micro-organismos do solo no Semiárido, em especial daqueles envolvidos com processo de fixação biológica de nitrogênio. O objetivo deste trabalho foi determinar a diversidade de uma coleção de bactérias associadas ao milho (Zea mays L.) em solos do Semiárido. As bactérias foram avaliadas quanto à amplificação de um fragmento do gene nifH por meio de PCR e pela técnica de ARDRA. Dentre as 72 bactérias testadas, 47 foram considerados nifH positivos e a análise dos perfis de ARDRA mostrou que o local de origem dos isolados foi fator determinante para o agrupamento das bactérias.
Tipo: Parte de livro Palavras-chave: Fixação biológica de nitrogênio; ARDRA; Maize.; Milho; Bacteria; Inoculante..
Ano: 2016 URL: http://www.alice.cnptia.embrapa.br/alice/handle/doc/1055118
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Caracterização molecular e capacidade de promoção do crescimento vegetal de bactérias diazotróficas isoladas do sorgo (Sorghum bicolor (L.) Moench). Repositório Alice
SILVA, T. R. da; CARVALHO, B. R.; SANTOS, J. M. R. dos; SILVA, J. F. da; FERNANDES JUNIOR, P. I..
Este trabalho teve como objetivo caracterizar bactérias potencialmente diazotróficas associadas ao sorgo cultivado no Semiárido pernambucano e avaliar estes isolados selecionados quanto à eficiência na promoção do crescimento vegetal.
Tipo: Parte de livro Palavras-chave: Fixação biológica de nitrogênio; Diversidade; Crescimento vegetal; Bactérias diazotróficas; Sorghum.; Sorgo; Bacteria; Graminea; Inoculante; Sorghum Bicolor..
Ano: 2017 URL: http://www.alice.cnptia.embrapa.br/alice/handle/doc/1073371
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Caracterización de cultivos iniciadores en productos cárnicos. Parte 1 OceanDocs
Beldarraín, T.; Cepero, Y.; Bruselas, A.; Santos, R.; Ramos, M.; Moya, Y.; Núñez, M.; Vergara, N..
En este trabajo se caracterizaron tecnológicamente, a escala de laboratorio, 5 cultivos iniciadores. Las propiedades tecnológicas evaluadas fueron pH en caldo glucosado, viabilidad del cultivo, tolerancia a elevada concentración de sal, inactivación a 60 ºC por 30 min, entre otras. Todos los cultivos, por sus aptitudes acidificantes y población celular se consideraron aptos para su empleo industrial y se pudieron categorizar como productores de baja y alta acidez.
Tipo: Journal Contribution Palavras-chave: Bacteria; Starters; Lactic acid bacteria; Microbial starters; Media production; Meat products.
Ano: 2008 URL: http://hdl.handle.net/1834/4896
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Caracterización y evaluación de la calidad del agua de la Bahía de Jaramijó-Provincia de Manabí durante el año 2008 OceanDocs
Rodriguez de Morán, A..
The current research was developed in Bahia of Jaramijó in the Province of Manabí during 2008, as part of the major project: " Characterization of the Ecuadorian Coast" that has been developing by INOCAR, in order to contribute to the proper use of resources and the environment. It characterized and assesses the results obtained in the research of the quality of water of Bahía of Jaramijó, taking into consideration the averages and their behaviour in each level studied in two different season in the year (wet-dry) and in two tide condition (ebb and flow) of the different parameter physical, chemical and microbiological. During the research was established that coastal marine waters of Bahía of Jaramijó, not show pollution of organic origin neither...
Tipo: Journal Contribution Palavras-chave: Water quality; Environmental legislation; Bacteria; Pollution; Oxygen.
Ano: 2013 URL: http://hdl.handle.net/1834/5758
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Catheter-related infections in a northwestern São Paulo reference unit for burned patients care BJID
Campos Júnior,Cláudio Penido; Sanches,Patrícia; Tedokon,Elizabete Aparecida; Souza,Ana Carolina Remondi; Machado,Ricardo Luiz Dantas; Rossit,Andréa Regina Baptista.
Despite improvements in care and rehabilitation of burned patients, infections still remain the main complication and death cause. Catheter-related infections are among the four most common infections and are associated with skin damage and insertion site colonization. There are few studies evaluating this kind of infection worldwide in this special group of patients. Padre Albino Hospital Burn Care Unit (PAHBCU) is the only reference center in the Northwestern São Paulo for treatment of burned patients. This paper presents the results of a retrospective study aiming at describing the epidemiological and clinical features of catheter-related infections at PAHBCU.
Tipo: Info:eu-repo/semantics/article Palavras-chave: Catheter; Infections; Burns; Bacteria.
Ano: 2010 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1413-86702010000200009
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Characterisation of volatile compounds produced by bacteria isolated from the spoilage flora of cold-smoked salmon ArchiMer
Joffraud, Jean-jacques; Leroi, Francoise; Roy, Caroline; Berdague, J.
This study investigated the volatile compounds produced by bacteria belonging to nine different bacterial groups: Lactobacillus sake, L. farciminis, L. alimentarius. Carnobacterium piscicola, Aeromonas sp., Shewanella putefaciens. Brochothrix thermosphacta, Photobacterium phosphoreum and Enterobacteriaceae isolated from cold-smoked salmon. Each bacterial group was represented by several strains. In addition, combinations of the groups were examined as well. Sterile blocks of cold-smoked salmon were inoculated, vacuum-packed and stored at 6 degreesC. After 40 days of storage at 6 degreesC, aerobic viable count and pH were recorded, the volatile fraction of the samples was analysed by gas chromatography-mass spectrometry (GC-MS). and spoilage was assessed by...
Tipo: Text Palavras-chave: Volatile compounds; Bacteria; Spoilage; Cold smoked salmon.
Ano: 2001 URL: http://archimer.ifremer.fr/doc/2001/publication-492.pdf
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Characterization of a small cryptic plasmid from endophytic Pantoea agglomerans and its use in the construction of an expression vector Genet. Mol. Biol.
Rudi Emerson de Lima,Procópio; Araújo,Welington Luiz; Andreote,Fernando Dini; Azevedo,João Lúcio.
A circular cryptic plasmid named pPAGA (2,734 bp) was isolated from Pantoea agglomerans strain EGE6 (an endophytic bacterial isolate from eucalyptus). Sequence analysis revealed that the plasmid has a G+C content of 51% and contains four potential ORFs, 238(A), 250(B), 131(C), and 129(D) amino acids in length without homology to known proteins. The shuttle vector pLGM1 was constructed by combining the pPAGA plasmid with pGFPmut3.0 (which harbors a gene encoding green fluorescent protein, GFP), and the resulting construct was used to over-express GFP in E. coli and P. agglomerans cells. GFP production was used to monitor the colonization of strain EGE6gfp in various plant tissues by fluorescence microscopy. Analysis of EGE6gfp colonization showed that 14...
Tipo: Info:eu-repo/semantics/article Palavras-chave: Green fluorescent protein; Bacteria; Host plant; Eucalyptus.
Ano: 2011 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1415-47572011000100018
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Characterization of dioxygenases and biosurfactants produced by crude oil degrading soil bacteria BJM
Muthukamalam,Santhakumar; Sivagangavathi,Sivalingam; Dhrishya,Dharmapal; Sudha Rani,Sadras.
ABSTRACT Role of microbes in bioremediation of oil spills has become inevitable owing to their eco friendly nature. This study focused on the isolation and characterization of bacterial strains with superior oil degrading potential from crude-oil contaminated soil. Three such bacterial strains were selected and subsequently identified by 16S rRNA gene sequence analysis as Corynebacterium aurimucosum, Acinetobacter baumannii and Microbacterium hydrocarbonoxydans respectively. The specific activity of catechol 1,2 dioxygenase (C12O) and catechol 2,3 dioxygenase (C23O) was determined in these three strains wherein the activity of C12O was more than that of C23O. Among the three strains, Microbacterium hydrocarbonoxydans exhibited superior crude oil degrading...
Tipo: Info:eu-repo/semantics/article Palavras-chave: Crude oil; Biodegradation; Bacteria; Catechol dioxygenase; Biosurfactant.
Ano: 2017 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1517-83822017000400637
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Chlorine dioxide against bacteria and yeasts from the alcoholic fermentation BJM
Meneghin,Silvana Perissatto; Reis,Fabricia Cristina; Almeida,Paulo Garcia de; Ceccato-Antonini,Sandra Regina.
The ethanol production in Brazil is carried out by fed-batch or continuous process with cell recycle, in such way that bacterial contaminants are also recycled and may be troublesome due to the substrate competition. Addition of sulphuric acid when inoculum cells are washed can control the bacterial growth or alternatively biocides are used. This work aimed to verify the effect of chlorine dioxide, a well-known biocide for bacterial decontamination of water and equipments, against contaminant bacteria (Bacillus subtilis, Lactobacillus plantarum, Lactobacillus fermentum and Leuconostoc mesenteroides) from alcoholic fermentation, through the method of minimum inhibitory concentration (MIC), as well as its effect on the industrial yeast inoculum. Lower MIC...
Tipo: Info:eu-repo/semantics/article Palavras-chave: Chlorine dioxide; Bacteria; Yeast; Antibacterial agent; Alcohol; Fermentation.
Ano: 2008 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1517-83822008000200026
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Cinnabarin synthesis by Pycnoporus sanguineus strains and antimicrobial activity against bacteria from food products Rev. Microbiol.
Smânia,Elza de Fátima Albino; Smânia Júnior,Artur; Loguercio-Leite,Clarice.
Among three strains of Pycnoporus sanguineus, MIP 89007 produced more cinnabarin than MIP 95001 and MIP 95002. The antimicrobial activity of cinnabarin was tested against 11 species of bacteria isolated from food. Bacillus cereus and Leuconostoc plantarum were the most sensitive to cinnabarin, being inhibited by 0.0625 mg/ml. Klebsiella pneumoniae was the least sensitive (>4.0 mg/ml).
Tipo: Info:eu-repo/semantics/article Palavras-chave: Pycnoporus sanguineus; Cinnabarin; Antimicrobial activity; Fungus; Bacteria.
Ano: 1998 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S0001-37141998000400017
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Cloning and characterization of the gene encoding the PepF endopeptidase from the aquatic bacterium Caulobacter crescentus BJM
Braz,Vânia S.; Lang,Elza A.S.; Marques,Marilis V..
The metallopeptidases have a very important role in bacteria, being involved in several processes that rely on protein turnover, such as nutrition, degradation of signal peptides, protein localization and virulence. We have cloned and characterized the gene of the metalloendopeptidase PepF from the aquatic bacterium Caulobacter crescentus. The gene upstream of pepF (orf1) encodes a conserved hypothetical protein found in Mycobacterium and Streptomyces. pepF is co-transcribed with the gene downstream (orf3), which encodes a protein that belongs to the ABC1 protein kinase family, suggesting that these two proteins may share a common function in the cell. The C. crescentus PepF protein possesses the conserved HEXGH motif present in zinc binding domains of...
Tipo: Info:eu-repo/semantics/article Palavras-chave: Endopeptidase; M3 family; Gene regulation; Bacteria.
Ano: 2002 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1517-83822002000100017
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