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Registros recuperados: 3
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CNBi: the new Brazilian National Consortium for Bioinformatics. Repositório Alice
HERAI, R. H.; VIDAL, R. O.; CARAZZOLLE, M. F.; COSTA, G. G. L.; FALCAO, P. R. K.; YAMAGISHI, M. E. B.; FRANCHINI, K. G.; PEREIRA, G. G. A..
PRESENTATION: The National Consortium for Bioinformatics (CNBi) is a multidisciplinary center dedicated to research, development, management and technical support on questions arising from bioinformatics. It was created by a joint effort between three laboratories from São Paulo state in Brazil: the Genomic and Expression Laboratory (UNICAMP), Applied Bioinformatics Laboratory (EMBRAPA/CNPTIA) and National Laboratory of Biosciences (LNBio), and is organized as a distributed center inside the mentioned laboratories. MISSION: As a national center for bioinformatics, CNBi?s mission is the generation of new biotechnological information and advanced methods of computer-based information processing. Moreover it intends to act in the ?eld of genomics, proteomics...
Tipo: Resumo em anais de congresso (ALICE) Palavras-chave: Base de dados; Bioinformática; National Consortium for Bioinformatics; Bioinformatics; Databases.
Ano: 2010 URL: http://www.alice.cnptia.embrapa.br/handle/doc/868494
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PredIP: an in silico approach for automated protein interaction prediction in genomic and transcriptomic sequence databanks. Repositório Alice
ALVAREZ, J. C.; HERAI, R. H.; CARAZZOLLE, M. F.; PEREIRA, G. G. A..
The fast-growing amount of protein interaction databanks have made possible to analyze deeply several metabolic or signaling pathways in different organisms. The information available in such databanks can be used to predict new protein interactions in transcriptome or proteome sequences, most of times this task is done by sequence homology or by structure similarity. In this way, several in silico systems were already proposed, like Peimap, which makes its predictions based on experimentally validated protein-protein interaction databanks of different organisms. A restricting criteria to use such tools is the input data, that only accepts proteomic sequences. Based on the importance of the protein complex prediction, and in the fact that several genomes...
Tipo: Resumo em anais de congresso (ALICE) Palavras-chave: Bases de dados; Proteínas; Interação entre proteínas; Databases; Proteins; Moniliophthora perniciosa.
Ano: 2010 URL: http://www.alice.cnptia.embrapa.br/handle/doc/868512
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TORNADO: an automated pipeline for de novo hybrid genome assembly based on free software packages for sanger and next generation sequencing technologies (NGS). Repositório Alice
HERAI, R. H.; COSTA, G. G. D. L.; R. JÚNIOR, O.; VIDAL, R. O.; NASCIMENTO, L. C.; PARIZZI, L. P.; PEREIRA, G. G. A.; CARAZZOLLE, M. F..
Next generation sequence technologies (NGS) made possible to sequence entirely genomes in a fast way and low cost, from unicellular to complex organisms, like plants and mammals. These sequences can be assembled (i ) using a reference genome or by some de novo bioinformatics method, such as Velvet, SOAPDenovo, Edena, ABYSS, GS Assembler 454, Mira and ZORRO. They are mainly based on de Bruijin graphs or, in a few softwares, reads overlapping to form contigs and scaffolds. The involved filtering and assembly step are very sensitive for each type of tool, and can be a key factor to generate the best assembly results. This way, when a set of sequences from distinct technologies exists, from Sanger to NGS, it is necessary the use of distinct assembly strategies...
Tipo: Resumo em anais de congresso (ALICE) Palavras-chave: Bases de dados; Bioinformática; Genoma; Genome; Moniliophthora perniciosa; Databases; Bioinformatics; Computer software.
Ano: 2010 URL: http://www.alice.cnptia.embrapa.br/handle/doc/868519
Registros recuperados: 3
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