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Registros recuperados: 12
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Analysis of virion structural components reveals vestiges of the ancestral ichnovirus genome Inra
Volkoff, A.N.; Jouan, V.; Urbach, S.; Samain, S.; Bergoin, M.; Wincker, P.; Demettre, E.; Cousserans, F.; Provost, B.; Coulibaly, F.; Legeai, F.; Béliveau, C.; Cusson, M.; Gyapay, G.; Drezin, J.M..
Many thousands of endoparasitic wasp species are known to inject polydnavirus (PDV) particles into their caterpillar host during oviposition, causing immune and developmental dysfunctions that benefit the wasp larva. PDVs associated with braconid and ichneumonid wasps, bracoviruses and ichnoviruses respectively, both deliver multiple circular dsDNA molecules to the caterpillar. These molecules contain virulence genes but lack core genes typically involved in particle production. This is not completely unexpected given that no PDV replication takes place in the caterpillar. Particle production is confined to the wasp ovary where viral DNAs are generated from proviral copies maintained within the wasp genome. We recently showed that the genes involved in...
Tipo: Journal Article Palavras-chave: POLYDNAVIRUS; ENDOPARASITOIDE LARVAIRE; NOCTUELLE; HYPOSOTER DIDYMATOR; VIRUS SYMBIOTIQUE.
Ano: 2010 URL: http://www.prodinra.inra.fr/prodinra/pinra/doc.xsp?id=PROD20115e58bd94&uri=/notices/prodinra1/2011/02/
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Bioinformatic analysis of ESTs collected by Sanger and pyrosequencing methods for a keystone forest tree species : oak Inra
Ueno, S.; Le Provost, G.; Léger, V.; Klopp, C.; Noirot, C.; Frigerio, J.M.; Salin, F.; Salse, J.; Abrouk, M.; Murat, F.; Brendel, O.; Derory, J.; Abadie, P.; Léger, P.; Cabane, C.; Barré, A.; De Daruvar, A.; Couloux, A.; Wincker, P.; Reviron, M.-P.; Kremer, A.; Plomion, C..
Background: The Fagaceae family comprises about 1,000 woody species worldwide. About half belong to the Quercus family. These oaks are often a source of raw material for biomass wood and fiber. Pedunculate and sessile oaks, are among the most important deciduous forest tree species in Europe. Despite their ecological and economical importance, very few genomic resources have yet been generated for these species. Here, we describe the development of an EST catalogue that will support ecosystem genomics studies, where geneticists, ecophysiologists, molecular biologists and ecologists join their efforts for understanding, monitoring and predicting functional genetic diversity.Results: We generated 145,827 sequence reads from 20 cDNA libraries using the Sanger...
Tipo: Journal Article Palavras-chave: POLYMORPHISME NUCLÉOTIDIQUE SIMPLE; RESSOURCE GÉNOMIQUE; EXTRACTION D'ARN; CLONAGE D'ADN; OUTIL D'ANALYSE.
Ano: 2010 URL: http://www.prodinra.inra.fr/prodinra/pinra/doc.xsp?id=PROD2011fe822ff&uri=/notices/prodinra1/2011/03/
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Chromosome size and number polymorphisms in Leishmania infantum suggest amplification/deletion and possible genetic exchange IRD
Pagès, M.; Bastien, P.; Veas, Francisco; Rossi, V.; Bellis, M.; Wincker, P.; Rioux, J.A.; Roizès, G..
Tipo: Text Palavras-chave: GENETIQUE; ADN; CARYOTYPE; LEISHMANIOSE; ELECTROPHORESE EN CHAMP PULSE; REARRANGEMENT CHROMOSOMIQUE.
Ano: 1989 URL: http://www.documentation.ird.fr/hor/fdi:31355
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Development of resources for comparative physical mapping between Muscadinia rotundifolia and Vitis vinifera Inra
Zah-Bi, I.; Blanc, S.; Bras, M.; Canaguier, A.; Le Clainche, I.; Couturat, L.; Choisne, N.; Dry, I.; Gouyvenoux, M.; Merdinoglu, D.; Poulain, J.; Quesneville, H.; Wincker, P.; Mestre, P.; Adam-Blondon, A.F..
Tipo: Conference Paper Palavras-chave: MUSCADINIA ROTUNDIFOLIA; GRAPEVINE; DNA SEQUENCE.
Ano: 2010 URL: http://www.prodinra.inra.fr/prodinra/pinra/doc.xsp?id=PROD2010c779322e&uri=/notices/prodinra1/2011/01/
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Expanding Tara Oceans Protocols for Underway, Ecosystemic Sampling of the Ocean-Atmosphere Interface During Tara Pacific Expedition (2016-2018) ArchiMer
Gorsky, Gabriel; Bourdin, Guillaume; Lombard, Fabien; Pedrotti, Maria Luiza; Audrain, Samuel; Bin, Nicolas; Boss, Emmanuel; Bowler, Chris; Cassar, Nicolas; Caudan, Loic; Chabot, Genevieve; Cohen, Natalie R.; Cron, Daniel; De Vargas, Colomban; Dolan, John R.; Douville, Eric; Elineau, Amanda; Flores, J. Michel; Ghiglione, Jean Francois; Haentjens, Nils; Hertau, Martin; John, Seth G.; Kelly, Rachel L.; Koren, Ilan; Lin, Yajuan; Marie, Dominique; Moulin, Clementine; Moucherie, Yohann; Pesant, Stephane; Picheral, Marc; Poulain, Julie; Pujo-pay, Mireille; Reverdin, Gilles; Romac, Sarah; Sullivan, Mathew B.; Trainic, Miri; Tressol, Marc; Trouble, Romain; Vardi, Assaf; Voolstra, Christian R.; Wincker, Patrick; Agostini, Sylvain; Banaigs, Bernard; Boissin, Emilie; Forcioli, Didier; Furla, Paola; Galand, Pierre E.; Gilson, Eric; Reynaud, Stephanie; Sunagawa, Shinichi; Thomas, Olivier P.; Thurber, Rebecca Lisette Vega; Zoccola, Didier; Planes, Serge; Allemand, Denis; Karsenti, Eric; Planes, S.; Banaig, B.; Boissin, E.; Iwankow, G.; Allemand, D.; Zoccola, D.; Reynaud, S.; Beraud, E.; Djerbi, N.; Forcioli, D.; Furla, P.; Gilson, E.; Mcmind, R.; Ottaviani, A.; Rottinger, E.; Rouan, A.; Zamoum, T.; Flume, B. C. C.; Pogoreutz, C.; Voolstra, C. R.; Rothig, T.; Ziegler, M.; Paoli, L.; Ruscheweyh, H-j; Salazar, G.; Sunagawa, S.; Flores, J. M.; Koren, I; Trainic, M.; Lang-yona, N.; Vardi, A.; Conan, P.; Ghiglione, J-f; Pujo-pay, M.; Galand, P. E.; Hochart, C.; Audrain, S.; Bourgois, E.; Hertau, M.; Lancelot, J.; Monmarche, D.; Moulin, C.; Moucherie, Y.; Trouble, R.; Boss, E.; Bourdin, G.; Haentjens, N.; Karp-boss, L.; Douville, Eric; Agostini, S.; Mitsuhashi, G.; Kitano, Y.; Da Silva, O.; Dolan, J. R.; Gorsky, G.; Lemee, R.; Lombard, F.; Pedrotti, M-l; Cronin, D.; Sullivan, M.; Armstrong, E.; Aury, J-m; Barbe, V; Belser, C.; Carradec, Q.; Labadie, K.; Le-hoang, J.; Noel, B.; Poulain, J.; Wincker, P.; Klinges, G.; Vega-thunder, R.; Bonnival, E.; De Vargas, C.; Henry, N.; Marie, D.; Romac, S.; Pesant, S.; Miguel-gorda, M.; Thomas, O. P.; Bowler, C.; Friedrich, R.; Cassar, N.; Lin, Y.; John, S. G.; Kelly, R. L.; Cohen, N. R.; Reverdin, G.; Filee, J..
Interactions between the ocean and the atmosphere occur at the air-sea interface through the transfer of momentum, heat, gases and particulate matter, and through the impact of the upper-ocean biology on the composition and radiative properties of this boundary layer. The Tara Pacific expedition, launched in May 2016 aboard the schooner Tara, was a 29-month exploration with the dual goals to study the ecology of reef ecosystems along ecological gradients in the Pacific Ocean and to assess inter-island and open ocean surface plankton and neuston community structures. In addition, key atmospheric properties were measured to study links between the two boundary layer properties. A major challenge for the open ocean sampling was the lack of ship-time available...
Tipo: Text Palavras-chave: Neuston/plankton genomics/taxonomy/imaging; Aerosols; NCP; IOP; Trace metals; Microplastic.
Ano: 2019 URL: https://archimer.ifremer.fr/doc/00599/71083/69390.pdf
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Expressed sequences tags of the anther smut fungus, Microbotryum violaceum, identify mating and pathogenicity genes Inra
Yockteng, R.; Marthey, S.; Chiapello, H.; Gendrault, A.; Hood, M.E.; Rodolphe, F.; Devier, B.; Wincker, P.; Dossat, C.; Giraud.
The basidiomycete fungus Microbotryum violaceum is responsible for the anther-smut disease in many plants of the Caryophyllaceae family and is a model in genetics and evolutionary biology. Infection is initiated by dikaryotic hyphae produced after the conjugation of two haploid sporidia of opposite mating type. This study describes M. violaceum ESTs corresponding to nuclear genes expressed during conjugation and early hyphal production.ResultsA normalized cDNA library generated 24,128 sequences, which were assembled into 7,765 unique genes; 25.2% of them displayed significant similarity to annotated proteins from other organisms, 74.3% a weak similarity to the same set of known proteins, and 0.5% were orphans. We identified putative pheromone receptors and...
Tipo: Journal Article Palavras-chave: SELECTION POSITIVE; BASIDIOMYCETE; EXPRESSION GENIQUE; BANQUE DE GENES; GENOMIQUE MICROBOTRYUM VIOLACEUM.
Ano: 2007 URL: http://www.prodinra.inra.fr/prodinra/pinra/doc.xsp?id=PROD2008243f0734&uri=/notices/prodinra1/2009/11/
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Generation and analysis of a 29,745 unique Expressed Sequence Tags from the Pacific oyster (Crassostrea gigas) assembled into a publicly accessible database: the GigasDatabase Inra
Fleury, E.; Huvet, A.; Lelong, C.; de Lorgeril, J.; Boulo, V.; Gueguen, Y.; Bachère, E.; Tanguy, A.; Moraga, D.; Fabioux, C.; Lindeque, P.; Shaw, J.; Reinhardt, R.; Prunet, P.; Davey, G.; Lapègue, S.; Sauvage, C.; Corporeau, C.; Moal, J.; Gavory, F.; Wincker, P.; Moreews, F.; Klopp, C.; Mathieu, M.; Boudry, P.; Favrel, P..
Tipo: Journal Article Palavras-chave: COQUILLAGE; HUITRE; CRASSOSTREA GIGAS; EXPRESSION DES GENES; BASE DE DONNEES; GIGASDATABASE.
Ano: 2009 URL: http://www.prodinra.inra.fr/prodinra/pinra/doc.xsp?id=PROD2009dfd43c72&uri=/notices/prodinra1/2009/11/
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High correlation between Chagas' disease serology and PCR-based detection of Trypanosoma cruzi kinetoplast DNA in bolivian children living in an endemic area IRD
Wincker, P.; Bosseno, Marie-France; Britto, C.; Yaksic, N.; Cardoso, M.A.; Morel, C.M.; Brenière, Simone Frédérique.
Tipo: Text Palavras-chave: TRYPANOSOMIASE HUMAINE; MALADIE DE CHAGAS; EPIDEMIOLOGIE; DIAGNOSTIC; ADN; GENETIQUE; ETUDE COMPARATIVE; SEROLOGIE; PCR.REACTION DE POLYMERISATION EN CHAINE.
Ano: 1994 URL: http://www.documentation.ird.fr/hor/fdi:010006712
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PCR-based diagnosis for Chagas' disease in bolivian children living in an active transmission area : comparison with conventional serological and parasitological diagnosis IRD
Wincker, P.; Telleria, J.; Bosseno, Marie-France; Cardoso, M.A.; Marques, P.; Yaksic, N.; Aznar, C.; Liegeard, M.; Hontebeyrie, M.; Noireau, François; Morel, C.M.; Brenière, Simone Frédérique.
A large field study has been performed in the Cochabamba region of Bolivia with the aim of comparing the polymerase chain reaction (PCR) with other diagnosis methods for Chagas' disease. The amplification of #Trypanosoma cruzi$-specific kinetoplast DNA sequences in blood samples was compared with classical serological methods, specific IgM detection and direct parasite visualization for 268 school children in a single village where Chagas' disease transmission is active. Of 113 children positive by classical serology or buffy coat examination, 106 were detected by PCR (sensitivity : 93,8%). We did not observe any significant difference of PCR sensitivity between initial (IgM and/or buffy coat positive) and indeterminate stage (only IgG positive) patients....
Tipo: Text Palavras-chave: MALADIE DE CHAGAS; DIAGNOSTIC; GENETIQUE; SEROLOGIE; ETUDE COMPARATIVE; PCR.REACTION DE POLYMERISATION EN CHAINE; IMMUNOGLOBULINE M.
Ano: 1996 URL: http://www.documentation.ird.fr/hor/fdi:010007855
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Polydnaviruses of Braconid Wasps Derive from an Ancestral Nudivirus Inra
Bézier, A.; Annaheim, M.; Herbinière, J.; Wetterwald, C.; Gyapay, G.; Bernard-Samain, S.; Wincker, P.; Roditi, I.; Heller; Belghazi, M.; Pfister-Wilhem, R.; Periquet, G.; Dupuy, C.; Huguet, E.; Volkoff, A.N.; Lanzrein, B.; Drezen, J.M..
Many species of parasitoid wasps inject polydnavirus particles in order to manipulate host defenses and development. Because the DNA packaged in these particles encodes almost no viral structural proteins, their relation to viruses has been debated. Characterization of complementary DNAs derived from braconid wasp ovaries identified genes encoding subunits of a viral RNA polymerase and structural components of polydnavirus particles related most closely to those of nudiviruses—a sister group of baculoviruses. The conservation of this viral machinery in different braconid wasp lineages sharing polydnaviruses suggests that parasitoid wasps incorporated a nudivirus-related genome into their own genetic material. We found that the nudiviral genes themselves...
Tipo: Journal Article Palavras-chave: POLYDNAVIRUS; NUDIVIRUS; BRACONIDAE; PARASITOIDE.
Ano: 2009 URL: http://www.prodinra.inra.fr/prodinra/pinra/doc.xsp?id=PROD201181139de0&uri=/notices/prodinra1/2011/05/
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The Tara Pacific expedition-A pan-ecosystemic approach of the "-omics" complexity of coral reef holobionts across the Pacific Ocean ArchiMer
Planes, Serge; Allemand, Denis; Agostini, Sylvain; Banaigs, Bernard; Boissin, Emilie; Boss, Emmanuel; Bourdin, Guillaume; Bowler, Chris; Douville, Eric; Flores, J. Michel; Forcioli, Didier; Furla, Paola; Galand, Pierre E.; Ghiglione, Jean-francois; Gilson, Eric; Lombard, Fabien; Moulin, Clementine; Pesant, Stephane; Poulain, Julie; Reynaud, Stephanie; Romac, Sarah; Sullivan, Matthew B.; Sunagawa, Shinichi; Thomas, Olivier P.; Trouble, Romain; De Vargas, Colomban; Thurber, Rebecca Vega; Voolstra, Christian R.; Wincker, Patrick; Zoccola, Didier; Planes, S.; Allemand, D.; Agostini, S.; Armstrong, E.; Audrain, S.; Aury, J-m; Banaig, B.; Barbe, V; Belser, C.; Beraud, E.; Boissin, E.; Bonnival, E.; Boss, E.; Bourdin, G.; Bourgois, E.; Bowler, C.; Carradec, Q.; Cassar, N.; Cohen, N. R.; Conan, P.; Cronin, D. R.; Da Silva, O.; De Vargas, C.; Djerbi, N.; Dolan, J. R.; Herta, Dominguez G.; Douville, Eric; Du J,; Filee, J.; Flores, J. M.; Forcioli, D.; Friedrich, R.; Furla, P.; Galand, P. E.; Ghiglione, J-f; Gilson, E.; Gorsky, G.; Guinther, M.; Haentjens, N.; Henry, N.; Hertau, M.; Hochart, C.; Hume, B. C. C.; Iwankow, G.; John, S. G.; Karp-boss, L.; Kelly, R. L.; Kitano, Y.; Klinges, G.; Koren, I; Labadie, K.; Lancelot, J.; Lang-yona, N.; Le-hoang, J.; Lemee, R.; Lin, Y.; Lombard, F.; Marie, D.; Mcmind, R.; Miguel-gordo, M.; Trainic, M.; Monmarche, D.; Moulin, C.; Mucherie, Y.; Noel, B.; Ottaviani, A.; Paoli, L.; Pedrotti, M-l; Pesant, S.; Pogoreutz, C.; Poulain, J.; Pujo-pay, M.; Reverdin, G.; Reynaud, S.; Romac, S.; Rothig, T.; Rottinger, E.; Rouan, A.; Ruscheweyh, H-j; Salazar, G.; Sullivan, M. B.; Sunagawa, S.; Thomas, O. P.; Trouble, R.; Vardi, A.; Vega-thunder, R.; Voolstra, C. R.; Wincker, P.; Zahed, A.; Zamoum, T.; Ziegler, M.; Zoccola, D..
Coral reefs are the most diverse habitats in the marine realm. Their productivity, structural complexity, and biodiversity critically depend on ecosystem services provided by corals that are threatened because of climate change effects-in particular, ocean warming and acidification. The coral holobiont is composed of the coral animal host, endosymbiotic dinoflagellates, associated viruses, bacteria, and other microeukaryotes. In particular, the mandatory photosymbiosis with microalgae of the family Symbiodiniaceae and its consequences on the evolution, physiology, and stress resilience of the coral holobiont have yet to be fully elucidated. The functioning of the holobiont as a whole is largely unknown, although bacteria and viruses are presumed to play...
Tipo: Text
Ano: 2019 URL: https://archimer.ifremer.fr/doc/00593/70500/68650.pdf
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Transferability of the EST-SSRs developed on Nules clementine (Citrus clementina Hort ex Tan) to other Citrus species and their effectiveness for genetic mapping Inra
Luro, F.; Costantino, G.; Terol, J.; Allario, T.; Argout, X.; Wincker, P.; Talon, T.; Ollitrault, P.; Morillon, R..
During the last decade, numerous microsatellite markers were developed for genotyping and to identify closely related plant genotypes. In citrus, previously developed microsatellite markers were arisen from genomic libraries and more often located in non coding DNA sequences. To optimize the use of these EST-SSRs as genetic markers in genome mapping programs and citrus systematic analysis, we have investigated their polymorphism related to the type (di or trinucleotide) or their position in the coding sequences.
Tipo: Journal Article Palavras-chave: EST-SSR MARKERS; CITRUS  PONCIRUS-TRIFOLIATA; MICROSATELLITE MARKERS; MOLECULAR MARKERS; GENOME ANALYSIS; LINKAGE MAP; BREAD WHEAT; LOCI; DIVERSITY; GERMPLASM; BARLEY.
Ano: 2008 URL: http://www.prodinra.inra.fr/prodinra/pinra/doc.xsp?id=PROD200948e7df56&uri=/notices/prodinra1/2009/11/
Registros recuperados: 12
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