Consulta: creatorFacets:"Moalic, Yann"
Registros recuperados: 13
Data/hora: 01/06/2024 12:12:16

New Insights into the Ecology and Physiology of Methanomassiliicoccales from Terrestrial and Aquatic Environments
Provedor de dados: 5
Autores: Cozannet, Marc; Borrel, Guillaume; Roussel, Erwan; Moalic, Yann; Allioux, Maxime; Sanvoisin, Amandine; Toffin, Laurent; Alain, Karine.
Members of the archaeal order Methanomassiliicoccales are methanogens mainly associated with animal digestive tracts. However, environmental members remain poorly characterized as no representatives not associated with a host have been cultivated so far. In this study, metabarcoding screening combined with quantitative PCR analyses on a collection of diverse non-host-associated environmental samples revealed that Methanomassiliicoccales were very scarce in most terrestrial and aquatic ecosystems. Relative abundance of Methanomassiliicoccales and substrates/products of methanogenesis were monitored during incubation of environmental slurries. A sediment slurry enriched in Methanomassiliicoccales was obtained from a freshwater sample. It allowed the...
Tipo: Text
Palavras-chave: Methanomassiliicoccales; Cultivation; Methyl-compounds; Environmental cluster; Networks.
Ano: 2021
URL: https://archimer.ifremer.fr/doc/00665/77716/79808.pdf

Relative abundance and diversity of bacterial methanotrophs at the oxic-anoxic interface of the Congo deep-sea fan
Provedor de dados: 5
Autores: Bessette, Sandrine; Moalic, Yann; Gautey, Sebastien; Lesongeur, Francoise; Godfroy, Anne; Toffin, Laurent.
Sitting at ~5 000 m water depth on the Congo-Angola margin and ~ 760 km offshore of the West African coast, the recent lobe complex of the Congo deep-sea fan receives large amounts of fluvial sediments (3-5% organic carbon). This organic-rich sedimentation area harbors habitats with chemosynthetic communities similar to those of cold seeps. In this study, we investigated relative abundance, diversity and distribution of aerobic methane-oxidizing bacteria (MOB) communities at the oxic-anoxic interface of sedimentary habitats by using fluorescence in situ hybridization and comparative sequence analysis of particulate mono-oxygenase (pmoA) genes. Our findings revealed that sedimentary habitats of the recent lobe complex hosted type I and type II MOB cells and...
Tipo: Text
Palavras-chave: Aerobic methane-oxidizing bacteria; PmoA; Organic-rich sediment; Methane seeps; Congo deep-sea fan.
Ano: 2017
URL: https://archimer.ifremer.fr/doc/00382/49327/49706.pdf

Disentangling the Influence of Mutation and Migration in Clonal Seagrasses Using the Genetic Diversity Spectrum for Microsatellites
Provedor de dados: 5
Autores: Arnaud-haond, Sophie; Moalic, Yann; Hernandez-garcia, Emilio; Eguiluz, Victor M.; Alberto, Filipe; Serrao, Ester A.; Duarte, Carlos M.
The recurrent lack of isolation by distance reported at regional scale in seagrass species was recently suggested to stem from stochastic events of large-scale dispersal. We explored the usefulness of phylogenetic information contained in microsatellite loci to test this hypothesis by using the Genetic Diversity Spectrum (GDS) on databases containing, respectively, 7 and 9 microsatellites genotypes for 1541 sampling units of Posidonia oceanica and 1647 of Cymodocea nodosa. The simultaneous increase of microsatellite and geographic distances that emerges reveals a coherent pattern of isolation by distance in contrast to the chaotic pattern previously described using allele frequencies, in particular, for the long-lived P. oceanica. These results suggest...
Tipo: Text
Palavras-chave: Clonality; Genetic Diversity Spectrum; Genetic divergence; Microsatellites; Seagrass; Stepwise mutation.
Ano: 2014
URL: http://archimer.ifremer.fr/doc/00182/29292/27733.pdf

Discriminating Micropathogen Lineages and Their Reticulate Evolution through Graph Theory-Based Network Analysis: The Case of Trypanosoma cruzi, the Agent of Chagas Disease
Provedor de dados: 5
Autores: Arnaud-haond, Sophie; Moalic, Yann; Barnabe, Christian; Ayala, Francisco Jose; Tibayrenc, Michel.
Micropathogens (viruses, bacteria, fungi, parasitic protozoa) share a common trait, which is partial clonality, with wide variance in the respective influence of clonality and sexual recombination on the dynamics and evolution of taxa. The discrimination of distinct lineages and the reconstruction of their phylogenetic history are key information to infer their biomedical properties. However, the phylogenetic picture is often clouded by occasional events of recombination across divergent lineages, limiting the relevance of classical phylogenetic analysis and dichotomic trees. We have applied a network analysis based on graph theory to illustrate the relationships among genotypes of Trypanosoma cruzi, the parasitic protozoan responsible for Chagas disease,...
Tipo: Text
Ano: 2014
URL: http://archimer.ifremer.fr/doc/00212/32374/30837.pdf

Travelling in time with networks: Revealing present day hybridization versus ancestral polymorphism between two species of brown algae, Fucus vesiculosus and F. spiralis
Provedor de dados: 5
Autores: Moalic, Yann; Arnaud, Sophie; Perrin, Cecile; Pearson, Gareth A.; Serrao, Ester A.
Background: Hybridization or divergence between sympatric sister species provides a natural laboratory to study speciation processes. The shared polymorphism in sister species may either be ancestral or derive from hybridization, and the accuracy of analytic methods used thus far to derive convincing evidence for the occurrence of present day hybridization is largely debated. Results: Here we propose the application of network analysis to test for the occurrence of present day hybridization between the two species of brown algae Fucus spiralis and F. vesiculosus. Individual-centered networks were analyzed on the basis of microsatellite genotypes from North Africa to the Pacific American coast, through the North Atlantic. Two genetic distances integrating...
Tipo: Text
Ano: 2011
URL: http://archimer.ifremer.fr/doc/00035/14600/11921.pdf

Large expert-curated database for benchmarking document similarity detection in biomedical literature search
Provedor de dados: 5
Autores: Brown, Peter; Tan, Aik-choon; El-esawi, Mohamed A.; Liehr, Thomas; Blanck, Oliver; Gladue, Douglas P.; Almeida, Gabriel M. F.; Cernava, Tomislav; Sorzano, Carlos O.; Yeung, Andy W. K.; Engel, Michael S.; Chandrasekaran, Arun Richard; Muth, Thilo; Staege, Martin S.; Daulatabad, Swapna V.; Widera, Darius; Zhang, Junpeng; Meule, Adrian; Honjo, Ken; Pourret, Olivier; Yin, Cong-cong; Zhang, Zhongheng; Cascella, Marco; Flegel, Willy A.; Goodyear, Carl S.; Van Raaij, Mark J.; Bukowy-bieryllo, Zuzanna; Campana, Luca G.; Kurniawan, Nicholas A.; Lalaouna, David; Huttner, Felix J.; Ammerman, Brooke A.; Ehret, Felix; Cobine, Paul A.; Tan, Ene-choo; Han, Hyemin; Xia, Wenfeng; Mccrum, Christopher; Dings, Ruud P. M.; Marinello, Francesco; Nilsson, Henrik; Nixon, Brett; Voskarides, Konstantinos; Yang, Long; Costa, Vincent D.; Bengtsson-palme, Johan; Bradshaw, William; Grimm, Dominik G.; Kumar, Nitin; Martis, Elvis; Prieto, Daniel; Sabnis, Sandeep C.; Amer, Said E. D. R.; Liew, Alan W. C.; Perco, Paul; Rahimi, Farid; Riva, Giuseppe; Zhang, Chongxing; Devkota, Hari P.; Ogami, Koichi; Basharat, Zarrin; Fierz, Walter; Siebers, Robert; Tan, Kok-hian; Boehme, Karen A.; Brenneisen, Peter; Brown, James A. L.; Dalrymple, Brian P.; Harvey, David J.; Ng, Grace; Werten, Sebastiaan; Bleackley, Mark; Dai, Zhanwu; Dhariwal, Raman; Gelfer, Yael; Hartmann, Marcus D.; Miotla, Pawel; Tamaian, Radu; Govender, Pragashnie; Gurney-champion, Oliver J.; Kauppila, Joonas H.; Zhang, Xiaolei; Echeverria, Natalia; Subhash, Santhilal; Sallmon, Hannes; Tofani, Marco; Bae, Taeok; Bosch, Oliver; Cuiv, Paraic O.; Danchin, Antoine; Diouf, Barthelemy; Eerola, Tuomas; Evangelou, Evangelos; Filipp, Fabian V.; Klump, Hannes; Kurgan, Lukasz; Smith, Simon S.; Terrier, Olivier; Tuttle, Neil; Ascher, David B.; Janga, Sarath C.; Schulte, Leon N.; Becker, Daniel; Browngardt, Christopher; Bush, Stephen J.; Gaullier, Guillaume; Ide, Kazuki; Meseko, Clement; Werner, Gijsbert D. A.; Zaucha, Jan; Al-farha, Abd A.; Greenwald, Noah F.; Popoola, Segun I.; Rahman, Md Shaifur; Xu, Jialin; Yang, Sunny Y.; Hiroi, Noboru; Alper, Ozgul M.; Baker, Chris I.; Bitzer, Michael; Chacko, George; Debrabant, Birgit; Dixon, Ray; Forano, Evelyne; Gilliham, Matthew; Kelly, Sarah; Klempnauer, Karl-heinz; Lidbury, Brett A.; Lin, Michael Z.; Lynch, Iseult; Ma, Wujun; Maibach, Edward W.; Mather, Diane E.; Nandakumar, Kutty S.; Ohgami, Robert S.; Parchi, Piero; Tressoldi, Patrizio; Xue, Yu; Armitage, Charles; Barraud, Pierre; Chatzitheochari, Stella; Coelho, Luis P.; Diao, Jiajie; Doxey, Andrew C.; Gobet, Angelique; Hu, Pingzhao; Kaiser, Stefan; Mitchell, Kate M.; Salama, Mohamed F.; Shabalin, Ivan G.; Song, Haijun; Stevanovic, Dejan; Yadollahpour, Ali; Zeng, Erliang; Zinke, Katharina; Alimba, C. G.; Beyene, Tariku J.; Cao, Zehong; Chan, Sherwin S.; Gatchell, Michael; Kleppe, Andreas; Piotrowski, Marcin; Torga, Gonzalo; Woldesemayat, Adugna A.; Cosacak, Mehmet I.; Haston, Scott; Ross, Stephanie A.; Williams, Richard; Wong, Alvin; Abramowitz, Matthew K.; Effiong, Andem; Lee, Senhong; Abid, Muhammad Bilal; Agarabi, Cyrus; Alaux, Cedric; Albrecht, Dirk R.; Atkins, Gerald J.; Beck, Charles R.; Bonvin, A. M. J. J.; Bourke, Emer; Brand, Thomas; Braun, Ralf J.; Bull, James A.; Cardoso, Pedro; Carter, Dee; Delahay, Robin M.; Ducommun, Bernard; Duijf, Pascal H. G.; Epp, Trevor; Eskelinen, Eeva-liisa; Fallah, Mazyar; Farber, Debora B.; Fernandez-triana, Jose; Feyerabend, Frank; Florio, Tullio; Friebe, Michael; Furuta, Saori; Gabrielsen, Mads; Gruber, Jens; Grybos, Malgorzata; Han, Qian; Heinrich, Michael; Helantera, Heikki; Huber, Michael; Jeltsch, Albert; Jiang, Fan; Josse, Claire; Jurman, Giuseppe; Kamiya, Haruyuki; De Keersmaecker, Kim; Kristiansson, Erik; De Leeuw, Frank-erik; Li, Jiuyong; Liang, Shide; Lopez-escamez, Jose A.; Lopez-ruiz, Francisco J.; Marchbank, Kevin J.; Marschalek, Rolf; Martin, Carmen S.; Miele, Adriana E.; Montagutelli, Xavier; Morcillo, Esteban; Nicoletti, Rosario; Niehof, Monika; O'Toole, Ronan; Ohtomo, Toshihiko; Oster, Henrik; Palma, Jose-alberto; Paterson, Russell; Peifer, Mark; Portilla, Maribel; Portillo, M. C.; Pritchard, Antonia L.; Pusch, Stefan; Raghava, Gajendra P. S.; Roberts, Nicola J.; Ross, Kehinde; Schuele, Birgitt; Sergeant, Kjell; Shen, Jun; Stella, Alessandro; Sukocheva, Olga; Uversky, Vladimir N.; Vanneste, Sven; Villet, Martin H.; Viveiros, Miguel; Vorholt, Julia A.; Weinstock, Christof; Yamato, Masayuki; Zabetakis, Ioannis; Zhao, Xin; Ziegler, Andreas; Aizat, Wan M.; Atlas, Lauren; Bridges, Kristina M.; Chakraborty, Sayan; Deschodt, Mieke; Domingues, Helena S.; Esfahlani, Shabnam S.; Falk, Sebastian; Guisado, J. L.; Kane, Nolan C.; Kueberuwa, Gray; Lau, Colleen L.; Liang, Dai; Liu, Enwu; Luu, Andreas M.; Ma, Chuang; Ma, Lisong; Moyer, Robert; Norris, Adam D.; Panthee, Suresh; Parsons, Jerod R.; Peng, Yousong; Pinto, Ines Mendes; Reschke, Cristina R.; Sillanpaa, Elina; Stewart, Christopher J.; Uhle, Florian; Yang, Hui; Zhou, Kai; Zhu, Shu; Ashry, Mohamed; Bergsland, Niels; Berthold, Maximilian; Chen, Chang-er; Colella, Vito; Cuypers, Maarten; Eskew, Evan A.; Fan, Xiao; Gajda, Maksymilian; Gonzalezlez-prendes, Rayner; Goodin, Amie; Graham, Emily B.; Groen, Ewout J. N.; Gutierrez-sacristan, Alba; Habes, Mohamad; Heffler, Enrico; Higginbottom, Daniel B.; Janzen, Thijs; Jayaraman, Jayakumar; Jibb, Lindsay A.; Jongen, Stefan; Kinyanjui, Timothy; Koleva-kolarova, Rositsa G.; Li, Zhixiu; Liu, Yu-peng; Lund, Bjarte A.; Lussier, Alexandre A.; Ma, Liping; Mier, Pablo; Moore, Matthew D.; Nagler, Katja; Orme, Mark W.; Pearson, James A.; Prajapati, Anilkumar S.; Saito, Yu; Troder, Simon E.; Uchendu, Florence; Verloh, Niklas; Voutchkova, Denitza D.; Abu-zaid, Ahmed; Bakkach, Joaira; Baumert, Philipp; Dono, Marcos; Hanson, Jack; Herbelet, Sandrine; Hobbs, Emma; Kulkarni, Ameya; Kumar, Narendra; Liu, Siqi; Loft, Nikolai D.; Reddan, Tristan; Senghore, Thomas; Vindin, Howard; Xu, Haotian; Bannon, Ross; Chen, Branson; Cheung, Johnny T. K.; Cooper, Jeffrey; Esnakul, Ashwini K.; Feghali, Karine A.; Ghelardi, Emilia; Gnasso, Agostino; Horbar, Jeffrey; Lai, Hei M.; Li, Jian; Ma, Lan; Ma, Ruiyan; Pan, Zihang; Peres, Marco A.; Pranata, Raymond; Seow, Esmond; Sydes, Matthew; Testoni, Ines; Westermair, Anna L.; Yang, Yongliang; Afnan, Masoud; Albiol, Joan; Albuquerque, Lucia G.; Amiya, Eisuke; Amorim, Rogerio M.; An, Qianli; Andersen, Stig U.; Aplin, John D.; Argyropoulos, Christos; Asmann, Yan W.; Assaeed, Abdulaziz M.; Atanasov, Atanas G.; Atchison, David A.; Avery, Simon V.; Avillach, Paul; Baade, Peter D.; Backman, Lars; Badie, Christophe; Baldi, Alfonso; Ball, Elizabeth; Bardot, Olivier; Barnett, Adrian G.; Basner, Mathias; Batra, Jyotsna; Bazanova, O. M.; Beale, Andrew; Beddoe, Travis; Bell, Melanie L.; Berezikov, Eugene; Berners-price, Sue; Bernhardt, Peter; Berry, Edward; Bessa, Theolis B.; Billington, Craig; Birch, John; Blakely, Randy D.; Blaskovich, Mark A. T.; Blum, Robert; Boelaert, Marleen; Bogdanos, Dimitrios; Bosch, Carles; Bourgoin, Thierry; Bouvard, Daniel; Boykin, Laura M.; Bradley, Graeme; Braun, Daniel; Brownlie, Jeremy; Bruhl, Albert; Burt, Austin; Butler, Lisa M.; Byrareddy, Siddappa N.; Byrne, Hugh J.; Cabantous, Stephanie; Calatayud, Sara; Candal, Eva; Carlson, Kimberly; Casillas, Sonia; Castelvetro, Valter; Caswell, Patrick T.; Cavalli, Giacomo; Cerovsky, Vaclav; Chagoyen, Monica; Chen, Chang-shi; Chen, Dong F.; Chen, Hao; Chen, Hui; Chen, Jui-tung; Chen, Yinglong; Cheng, Changxiu; Cheng, Jianlin; Chinapaw, Mai; Chinopoulos, Christos; Cho, William C. S.; Chong, Lillian; Chowdhury, Debashish; Chwalibog, Andre; Ciresi, A.; Cockcroft, Shamshad; Conesa, Ana; Cook, Penny A.; Cooper, David N.; Coqueret, Olivier; Corea, Enoka M.; Costa, Elisio; Coupland, Carol; Crawford, Stephanie Y.; Cruz, Aparecido D.; Cui, Huijuan; Cui, Qiang; Culver, David C.; D'Angiulli, Amedeo; Dahms, Tanya E. S.; Daigle, France; Dalgleish, Raymond; Danielsen, Havard E.; Darras, Sebastien; Davidson, Sean M.; Day, David A.; Degirmenci, Volkan; Demaison, Luc; Devriendt, Koenraad; Ding, Jiandong; Dogan, Yunus; Dong, X. C.; Donner, Claudio F.; Dressick, Walter; Drevon, Christian A.; Duan, Huiling; Ducho, Christian; Dumaz, Nicolas; Dwarakanath, Bilikere S.; Ebell, Mark H.; Eisenhardt, Steffen; Elkum, Naser; Engel, Nadja; Erickson, Timothy B.; Fairhead, Michael; Faville, Marty J.; Fejzo, Marlena S.; Festa, Fernanda; Feteira, Antonio; Flood-page, Patrick; Forsayeth, John; Fox, Simon A.; Franks, Steven J.; Frentiu, Francesca D.; Frilander, Mikko J.; Fu, Xinmiao; Fujita, Satoshi; Galea, Ian; Galluzzi, Luca; Gani, Federica; Ganpule, Arvind P.; Garcia-alix, Antonio; Gedye, Kristene; Giordano, Maurizio; Giunta, Cecilia; Gleeson, Paul A.; Goarant, Cyrille; Gong, Haipeng; Gora, Diop; Gough, Michael J.; Goyal, Ravinder; Graham, Kathryn E.; Grande-perez, Ana; Graves, Patricia M.; Greidanus, Harm; Grice, Darren; Grunau, Christoph; Gumulya, Yosephine; Guo, Yabin; Gurevich, Vsevolod V.; Gusev, Oleg; Hacker, Elke; Hage, Steffen R.; Hagen, Guy; Hahn, Steven; Haller, Dagmar M.; Hammerschmidt, Sven; Han, Jianwei; Han, Renzhi; Handfield, Martin; Hapuarachchi, Hapuarachchige C.; Harder, Timm; Hardingham, Jennifer E.; Heck, Michelle; Heers, Marcel; Hew, Khe F.; Higuchi, Yohei; St Hilaire, Cynthia; Hilton, Rachel; Hodzic, Enisa; Hone, Andrew; Hongoh, Yuichi; Hu, Guoku; Huber, Heinz P.; Hueso, Luis E.; Huirne, Judith; Hurt, Lisa; Idborg, Helena; Ikeo, Kazuho; Ingley, Evan; Jakeman, Philip M.; Jensen, Arne; Jia, Hong; Jia, Husen; Jia, Shuqin; Jiang, Jianping; Jiang, Xingyu; Jin, Yi; Jo, Daehyun; Johnson, Andrew M.; Johnston, Marie; Jonscher, Karen R.; Jorens, Philippe G.; Jorgensen, Jens O. L.; Joubert, Johan W.; Jung, Sin-ho; Junior, Antonio M.; Kahan, Thomas; Kamboj, Sunjeev K.; Kang, Yong-kook; Karamanos, Yannis; Karp, Natasha A.; Kelly, Ryan; Kenna, Ralph; Kennedy, Jonathan; Kersten, Birgit; Khalaf, Roy A.; Khalid, Javaria M.; Khatlani, T.; Khider, Tarig; Kijanka, Gregor S.; King, Sarah R. B.; Kluz, Tomasz; Knox, Paul; Kobayashi, Tatsuya; Koch, Karl-wilhelm; Kohonen-corish, Maija R. J.; Kong, Xiangpeng; Konkle-parker, Deborah; Korpela, Kalevi M.; Kostrikis, Leondios G.; Kraiczy, Peter; Kratz, Harald; Krause, Gunter; Krebsbach, Paul H.; Kristensen, Soren R.; Kumari, Prerna; Kunimatsu, Akira; Kurdak, Hatice; Kwon, Young D.; Lachat, Carl; Lagisz, Malgorzata; Laky, Brenda; Lammerding, Jan; Lange, Matthias; Larrosa, Mar; Laslett, Andrew L.; Leclair, Elizabeth E.; Lee, Kyung-woo; Lee, Ming-yih; Lee, Moon-soo; Li, Genyuan; Li, Jiansheng; Lieb, Klaus; Lim, Yau Y.; Lindsey, Merry L.; Line, Paul-dag; Liu, Dengcai; Liu, Fengbin; Liu, Haiyan; Liu, Hongde; Lloyd, Vett K.; Lo, Te-wen; Locci, Emanuela; Loidl, Josef; Lorenzen, Johan; Lorkowski, Stefan; Lovell, Nigel H.; Lu, Hua; Lu, Wei; Lu, Zhiyong; Luengo, Gustavo S.; Lundh, Lars-gunnar; Lysy, Philippe A.; Mabb, Angela; Mack, Heather G.; Mackey, David A.; Mahdavi, S. R.; Maher, Pamela; Maher, Toby; Maity, Sankar N.; Malgrange, Brigitte; Mamoulakis, Charalampos; Mangoni, Arduino A.; Manke, Thomas; Manstead, Antony S. R.; Mantalaris, Athanasios; Marsal, Jan; Marschall, Hanns-ulrich; Martin, Francis L.; Martinez-raga, Jose; Martinez-salas, Encarnacion; Mathieu, Daniel; Matsui, Yoichi; Maza, Elie; Mccutcheon, James E.; Mckay, Gareth J.; Mcmillan, Brian; Mcmillan, Nigel; Meads, Catherine; Medina, Loreta; Merrick, B. Alex; Metzger, Dennis W.; Meunier, Frederic A.; Michaelis, Martin; Micheau, Olivier; Mihara, Hisaaki; Mintz, Eric M.; Mizukami, Takuo; Moalic, Yann; Mohapatra, D. P.; Monteiro, Antonia; Montes, Matthieu; Moran, John V.; Morozov, Sergey Y.; Mort, Matthew; Murai, Noriyuki; Murphy, Denis J.; Murphy, Susan K.; Murray, Shauna A.; Naganawa, Shinji; Nammi, Srinivas; Nasios, Grigorios; Natoli, Roman M.; Nguyen, Frederique; Nicol, Christine; Van Nieuwerburgh, Filip; Nilsen, Erlend B.; Nobile, Clarissa J.; O'Mahony, Margaret; Ohlsson, Sophie; Olatunbosun, Oluremi; Olofsson, Per; Ortiz, Alberto; Ostrikov, Kostya; Otto, Siegmar; Outeiro, Tiago F.; Ouyang, Songying; Paganoni, Sabrina; Page, Andrew; Palm, Christoph; Paradies, Yin; Parsons, Michael H.; Parsons, Nick; Pascal, Pigny; Paul, Elisabeth; Peckham, Michelle; Pedemonte, Nicoletta; Pellizzon, Michael A.; Petrelli, M.; Pichugin, Alexander; Pinto, Carlos J. C.; Plevris, John N.; Pollesello, Piero; Polz, Martin; Ponti, Giovanna; Porcelli, Piero; Prince, Martin; Quinn, Gwendolyn P.; Quinn, Terence J.; Ramula, Satu; Rappsilber, Juri; Rehfeldt, Florian; Reiling, Jan H.; Remacle, Claire; Rezaei, Mohsen; Riddick, Eric W.; Ritter, Uwe; Roach, Neil W.; Roberts, David D.; Robles, Guillermo; Rodrigues, Tiago; Rodriguez, Cesar; Roislien, Jo; Roobol, Monique J.; Rowe, J. Alexandra; Ruepp, Andreas; Van Ruitenbeek, Jan; Rust, Petra; Saad, Sonia; Sack, George H.; Santos, Manuela; Saudemont, Aurore; Sava, Gianni; Schrading, Simone; Schramm, Alexander; Schreiber, Martin; Schuler, Sidney; Schymkowitz, Joost; Sczyrba, Alexander; Seib, Kate L.; Shi, Han-ping; Shimada, Tomohiro; Shin, Jeon-soo; Shortt, Colette; Silveyra, Patricia; Skinner, Debra; Small, Ian; Smeets, Paul A. M.; So, Po-wah; Solano, Francisco; Sonenshine, Daniel E.; Song, Jiangning; Southall, Tony; Speakman, John R.; Srinivasan, Mandyam V.; Stabile, Laura P.; Stasiak, Andrzej; Steadman, Kathryn J.; Stein, Nils; Stephens, Andrew W.; Stewart, Douglas I.; Stine, Keith; Storlazzi, Curt; Stoynova, Nataliya V.; Strzalka, Wojciech; Suarez, Oscar M.; Sultana, Taranum; Sumant, Anirudha V.; Summers, Mathew J.; Sun, Gang; Tacon, Paul; Tanaka, Kozo; Tang, Haixu; Tanino, Yoshinori; Targett-adams, Paul; Tayebi, Mourad; Tayyem, Reema; Tebbe, Christoph C.; Telfer, Evelyn E.; Tempel, Wolfram; Teodorczyk-injeyan, Julita A.; Thijs, Gert; Thorne, Sally; Thrift, Amanda G.; Tiffon, Celine; Tinnefeld, Philip; Tjahjono, Daryono H.; Tolle, Fabrice; Toth, Ervin; Del Tredici, Andria L.; Tsapas, Apostolos; Tsirigotis, Konstantinos; Turak, Ayse; Tzotzos, George; Udo, Edet E.; Utsumi, Toshiaki; Vaidyanathan, Subramanian; Vaillant, Michel; Valsesia, Armand; Vandenbroucke, Roosmarijn E.; Veiga, Feliciano H.; Vendrell, Marc; Vesk, Peter A.; Vickers, Paul; Victor, Victor M.; Villemur, Richard; Vohl, Marie-claude; Voolstra, Christian R.; Vuillemin, Anne; Wakelin, Steven; Waldron, Levi; Walsh, Laurence J.; Wang, Amanda Y.; Wang, Fuan; Wang, Yun; Watanabe, Yoichi; Weigert, Andreas; Wen, Jet-chau; Wham, Carol; White, Ethan P.; Wiener, Jan; Wilharm, Gottfried; Wilkinson, Simon; Willmann, Raffaella; Wilson, Coralie; Wirth, Brunhilde; Wojan, Timothy R.; Wolff, Mathieu; Wong, Bryan M.; Wu, Tzu-wei; Wuerbel, Hanno; Xiao, Xiangshu; Xu, Dong; Xu, J. W.; Xu, Jianping; Xue, Bin; Yalcin, Suayib; Yan, Hong; Yang, En-cheng; Yang, Shiqi; Yang, Wei; Ye, Yuzhen; Ye, Zhi-qiang; Yli-kauhaluoma, Jari; Yoneyama, Hiroshi; Yu, Ying; Yuan, Guo-cheng; Yuh, Chiou-hwa; Zaccolo, Manuela; Zeng, Chen; Zevnik, Branko; Zhang, Chi; Zhang, Li; Zhang, Li; Zhang, Yingkai; Zhang, Yusen; Zhang, Zhiyong; Zhang, Zhong-yin; Zhao, Yuan; Zhou, Min; Zuberbier, Torsten; Aanei, Carmen M.; Ahmad, Rafi; Al-lawama, Manar; Alanio, Alexandre; Allardyce, Judith; Alonso-caneiro, David; Atack, John M.; Baier, Dirk; Bansal, Abhisheka; Benezeth, Yannick; Berbesque, Colette; Berrevoet, Frederik; Biedermann, Peter H. W.; Bijleveld, Erik; Bittner, Florian; Blombach, Fabian; Van Den Bos, Wouter; Boudreau, Shellie A.; Bramoweth, Adam D.; Braubach, Oliver; Cai, Yufeng; Campbell, Matthew; Cao, Zanxia; Catry, Thibault; Chen, Xin; Cheng, Shuiqin; Chung, Hee-jung; Chavez-fumagalli, Miguel A.; Conway, Aaron; Costa, Bruno M.; Cyr, Normand; Dean, Lorraine T.; Denzel, Martin S.; Dlamini, S. V.; Dudley, Kevin J.; Dufies, Maeva; Ecke, Thorsten; Eckweiler, Denitsa; Eixarch, Elisenda; El-adawy, Hosny; Emmrich, Julius V.; Eustace, Alex J.; Falter-wagner, Christine M.; Fuss, Johannes; Gao, Jianzhao; Gill, Martin R.; Gloyn, Liz; Goggs, Robert; Govinden, Usha; Greene, Garrett; Greiff, Victor; Grundle, D. S.; Gruneberg, Patrick; Gumede, Nicksy; Haore, Gbaguidi; Harrison, Pille; Hoenner, Xavier; Hojsgaard, Diego; Hori, Hikaru; Ikonomopoulou, Maria P.; Jeurissen, Patrick; Johnson, Daniel M.; Kabra, Dhiraj; Kamagata, Koji; Karmakar, Chandan; Kasian, Olga; Kaye, Linda K.; Khan, Murad M.; Kim, Yong-min; Kish, J. K.; Kobold, Sebastian; Kohanbash, Gary; Kohls, Gregor; Kugler, Jan-michael; Kumar, Gyanendra; Lacy-colson, Jon; Latif, Asam; Lauschke, Volker M.; Li, Bingling; Lim, Chinten J.; Liu, Fang; Liu, Xiaodong; Lu, Jin-jian; Lu, Qiang; Mahavadi, Poornima; Marzocchi, Ugo; Mcgarrigle, Christine A.; Van Meerten, Tom; Min, Rogier; Moal, Iain; Molari, Massimiliano; Molleman, Lucas; Mondal, Saiful R.; Van De Mortel, Thea; Moss, W. N.; Moultos, Othonas A.; Mukherjee, Maheswari; Nakayama, Kazuhiko; Narayan, Edward; Navaratnarajah,; Neumann, Philipp-alexander; Nie, Jiyun; Nie, Yingjiu; Niemeyer, Frank; Fiona,; Nwaiwu, Ogueri; Oldenmenger, Wendy H.; Olumayede, Emmanuel; Ou, Jianhong; Pallebage-gamarallage, Menuka; Pearce, Simon P.; Pelkonen, Tuula; Pelleri, Maria C.; Pereira, Joana L.; Pheko, Mpho; Pinto, Karina A.; Piovesan, Allison; Pluess, Michael; Podolsky, Illya M.; Prescott, Julie; Qi, Dongchen; Qi, Xingshun; Raikou, Vaia D.; Ranft, Andreas; Rhodes, Johanna; Rotge, Jean-yves; Rowe, Anna D.; Saggar, Manish; Schuon, Robert A.; Shahid, Shaouli; Shalchyan, Vahid; Shirvalkar, Prasad; Shiryayev, Oleg; Singh, Jugpreet; Smout, Michael J.; Soares, Antonio; Song, Chunjiao; Srivastava, Kshitij; Srivastava, Rupesh K.; Sun, Jim; Szabo, Attila; Szymanski, Wiktor; Tai, Chan N. P.; Takeuchi, Hisashi; Tanadini-lang, S.; Tang, Fei; Tao, Wanyin; Theron, G.; Tian, Chang F.; Tian, Yu-shi; Tuttle, Lisa M.; Valenti, Anna; Verlot, Pierre; Walker, Mirella; Wang, Jun; Welter, Danielle; Winslade, Matthew; Wu, Dalei; Wu, Yi-rui; Xiao, Han; Xu, Beisi; Xu, Juan; Xu, Ziyue; Yang, Dongdong; Yang, Mingjun; Yankilevich, Patricio; You, Yuyi; Yu, Chenglong; Zhan, Jian; Zhang, Gong; Zhang, Kai; Zhang, Tuo; Zhang, Yi; Zhao, Guoyan; Zhao, Jing; Zhou, Xiaofan; Zhu, Zhenxing; Ajani, Penelope A.; Anazodo, Udunna C.; Bagloee, Saeed A.; Bail, Kasia; Bar, Ido; Bathelt, Joe; Benkeser, David; Bernier, Meghan L.; Blanchard, Adam M.; Boakye, Dominic W.; Bonatsos, Vasileios; Boon, Michele H.; Bouboulis, George; Bromfield, Elizabeth; Brown, Joshua; Bul, Kim C. M.; Burton, Kathryn J.; Butkowski, Eugene G.; Carroll, Grace; Chao, Fengqing; Charrier, Elisabeth E.; Chen, Xiaoyin; Chen, Yu-chih; Chenguang,; Choi, Jane R.; Christoffersen, Tore; Comel, Joao C.; Cosse, Cyril; Cui, Yanru; Van Dessel, Pieter; Dhaval,; Diodato, Daria; Duffey, Maelle; Dutt, Avik; Egea, Luis G.; El-said, Mohammed; Faye, Martin; Fernandez-fernandez, Beatriz; Foley, Kieran G.; Founou, Luria L.; Fu, Fan; Gadelkareem, Rabea A.; Galimov, Evgeny; Garip, Gulcan; Gemmill, Alison; Gouil, Quentin; Grey, James; Gridneva, Zoya; Grothe, Michel J.; Grebert, Theophile; Guerrero, Fabricio; Guignard, Leo; Haenssgen, Marco J.; Hasler, David; Holgate, Joan Y.; Huang, Ancheng; Hulse-kemp, Amanda M.; Jean-quartier, Claire; Jeon, Sang-min; Jia, Yangyang; Jutzeler, Catherine; Kalatzis, Panagiotis; Karim, Masud; Karsay, Kathrin; Keitel, Anne; Kempe, Andreas; Keown, Jeremy R.; Khoo, Chin M.; Khwaja, Nyil; Kievit, Rogier A.; Kosanic, Aleksandra; Koutoukidis, Dimitrios A.; Kramer, Paul; Kumar, Dilip; Kirag, Nukhet; Lanza, Giuseppe; Le, Thuc D.; Leem, Jung W.; Leightley, Daniel; Leite, Andreia; Lercher, Lukas; Li, Ying; Lim, Renly; Lima, Luiz R. A.; Lin, Li; Ling, Tong; Liu, Yuchen; Liu, Zhonghua; Lu, Yao; Lum, Fok M.; Luo, Hang; Machhi, Jatin; Macleod, Angus; Macwan, Isaac; Madala, Hanumantha R.; Madani, Nima; De Maio, Nicola; Makowiecki, Kalina; Mallinson, Daniel J.; Margelyte, Ruta; Maria, Caracausi; Markonis, Y.; Marsili, Luca; Mavoa, Suzanne; Mcwilliams, Lorna; Megersa, Moa; Mendes, Caetano S. M.; Menichetti, Julia; Mercieca-bebber, Rebecca; Miller, Jack J.; Minde, David-paul M.; Minges, Alexander; Mishra, Eleanor; Mishra, Virendra R.; Moores, Carly; Morrice, Nicola; Moskalensky, Alexander E.; Navarin, Nicolo; Negera, Edessa; Nolet, Philippe; Nordberg, Ana; Norden, Rickard; Nowicki, Jessica P.; Olova, Nelly; Olszewski, Pawel; Onzima, Robert; Pan, Chih-long; Park, Charny; Park, Dong Ik; Park, Seyoung; Patil, Chandrashekhar D.; Pedro, Sansoa A.; Perry, Samuel R.; Peter, Jessica; Peterson, Brent M.; Pezzuolo, Andrea; Pozdnyakov, Ilya; Qian, Siyu; Qin, Lei; Rafe, Ali; Raote, Ishier; Raza, Ali; Rebl, Henrike; Refai, Osama; Regan, Tim; Richa, Tambi; Richardson, Mark F.; Robinson, K. R.; Rossoni, Luca; Rouet, Romain; Safaei, Soroush; Schneeberger, Pierre H. H.; Schwotzer, Daniela; Sebastian, Agata; Selinski, Jennifer; Seltmann, Stefanie; Sha, Feng; Shalev, Nir; Shang, Jin-long; Singer, Josef; Singh, Mandeep; Smith, Taylor; Solomon-moore, Emma; Song, Lijuan; Soraggi, Samuele; Stanley, Ryan; Steckhan, Nico; Strobl, Frederic; Subissi, Lorenzo; Supriyanto, Irwan; Surve, Chinmay R.; Suzuki, Tomo; Syme, Caitlin; Sorelius, Karl; Tang, Young; Tantawy, Marwa; Tennakoon, Sumudu; Teseo, Serafino; Toelzer, Christine; Tomov, Nikola; Tovar, Miguel; Tran, Linh; Tripathi, Sushil; Tuladhar, Anil M.; Ukubuiwe, Azubuike C.; Ung, Carolina O. L.; Valgepea, Kaspar; Vatanparast, Hamid; Vidal, Arnau; Wang, Fang; Wang, Qing; Watari, Ricky; Webster, Rebecca; Webster, Ruth; Wei, Junnian; Wibowo, David; Wingenbach, Tanja S. H.; Xavier, Rose M.; Xiao, Shumin; Xiong, Peng; Xu, Shicai; Xu, Shilin; Yao, Ruifeng; Yao, Wen; Yin, Qinan; Yu, Yongbo; Zaitsu, Masayoshi; Zeineb, Zian; Zhan, Xiao-yong; Zhang, Jilei; Zhang, Rongqiang; Zhang, Wei; Zhang, Xianglilan; Zheng, Shan; Zhou, Bailing; Zhou, Xiaoyan; Ahmad, Haroon; Akinwumi, Sayo A.; Albery, Gregory F.; Alhowimel, Ahmed; Ali, Junaid; Alshehri, Mansour; Alsuhaibani, Mohammed; Anikin, Andrey; Azubuike, Samuel O.; Bach-mortensen, Anders; Baltiansky, Lior; Bartas, Martin; Belachew, Kiflemariam Y.; Bhardwaj, Vivek; Binder, Karin; Bland, Nicholas S.; Boah, Michael; Bullen, Benjamin; Calabro, Giovanna E.; Callahan, Tiffany J.; Cao, Bing; Chalmers, Kelsey; Chang, Wei; Che, Zhengping; Chen, Andrew T. Y.; Chen, Haimin; Chen, Huaming; Chen, Youning; Chen, Zhao; Choi, Youngrok; Chowdhury, Mohiuddin A. K.; Christensen, Martin R.; Cooke, Robert S. C.; Cottini, Marzia; Covington, Natalie V.; Cunningham, Catriona; Delarocque, Julien; Devos, Lucie; Dhar, Aurup R.; Ding, Ke-feng; Dong, Kexian; Dong, Zheng; Dreyer, Niklas; Ekstrand, Chelsea; Fardet, Tanguy; Feleke, Berhanu E.; Feurer, Thomas; Freitas, Angela; Gao, Tian; Asefa, N. G.; Giganti, Francesco; Grabowski, Piotr; Guerra-mora, Jose R.; Guo, Chengying; Guo, Xinyi; Gupta, Himanshu; He, Shuonan; Heijne, Marloes; Heinemann, Stephanie; Hogrebe, Alexander; Huang, Zhengping; Iskander-rizk, Sophinese; Iyer, Lavanya M.; Jahan, Yasmin; James, Ameh S.; Joel, Emmanuel; Joffroy, Bastian; Jegousse, Clara; Kambondo, George; Karnati, Priyanka; Kaya, Cihan; Ke, An; Kelly, Daniel; Kickert, Rob; Kidibule, Peter E.; Kieselmann, Jennifer P.; Kim, Hyeon J.; Kitazawa, Takeshi; Lamberts, Aniek; Li, You; Liang, Huakang; Linn, Sabrina N.; Litfin, Thomas; Liusuo, Wang; Lygirou, Vasiliki; Mahato, Ajay K.; Mai, Zhi-ming; Major, Rupert W.; Mali, Samira; Mallis, Panagiotis; Mao, Wenzhi; Mao, Wenzhi; Marvin-dowle, Katie; Marvin-dowle, Katie; Mason, Leanda D.; Merideth, Ben; Merino-plaza, Maria J.; Merlaen, Britt; Messina, Rossella; Mishra, Anand K.; Muhammad, Junaid; Musinguzi, Conrad; Nanou, Afroditi; Naqash, Amreen; Nguyen, Joe T.; Nguyen, Thi T. H.; Ni, Duan; Nida,; Notcovich, Shirli; Ohst, Barnabas; Ollivier, Quinn R.; Osses, Daniel F.; Peng, Xiangda; Plantinga, Arnoud; Pulia, Michael; Rafiq, Muhammad; Raman, Ayush; Raucher-chene, Delphine; Rawski, Rafal; Ray, Asit; Razak, Lubna A.; Rudolf, Kevin; Rusch, Peter; Sadoine, Margaux L.; Schmidt, Axel; Schurr, Roey; Searles, Stephen; Sharma, Saurab; Sheehan, Barry; Shi, Chunhu; Shohayeb, Belal; Sommerlad, Andrew; Strehlow, Jan; Sun, Xianbao; Sundar, Raghav; Taherzadeh, Ghazaleh; Tahir, Nur D. M.; Tang, Jun; Testa, Jean; Tian, Zhiqi; Tingting, Qian; Verheijen, Geert P.; Vickstrom, Casey; Wang, Teng; Wang, Xiaomin; Wang, Zhenxing; Wei, Pan; Wilson, Alex; Wyart,; Yassine, Abdul-amir; Yousefzadeh, Abbas; Zare, Asma; Zeng, Zhen; Zhang, Chengrong; Zhang, Haowen; Zhang, Linxing; Zhang, Tongchuan; Zhang, Weijia; Zhang, Zhe; Zhou, Jianyu; Zhu, Dongjie; Adamo, Vincenzo; Adeyemo, Adebolajo A.; Aggelidou, Maria; Al-owaifeer, Adi M.; Al-riyami, Arwa Z.; Alzghari, Saeed K.; Andersen, Vibeke; Angus, Kathryn; Asaduzzaman, Muhammad; Asady, Hadi; Ato, Dai; Bai, Xiaoyong; Baines, Rebecca L.; Ballantyne, Maghan; Ban, Bo; Beck, Jill; Ben-nafa, Walid; Black, Emma; Blancher, Antoine; Blankstein, Ron; Bodagh, Neil; Borges, Paulo A. V.; Brooks, Anastasia; Brox-ponce, Josue; Brunetti, Arturo; Canham, Colin D.; Carninci, Piero; Carvajal, Richard; Chang, Shun C.; Chao, Jie; Chatterjee, Pranab; Chen, He; Chen, Yi-chun; Chhatriwalla, Adnan K.; Chikowe, Ibrahim; Chuang, Trees-juen; Collevatti, Rosane G.; Valera-cornejo, Diego A.; Cuenda, Ana; Dao, Myriam; Dauga, Delphine; Deng, Zaian; Devkota, Kiran; Doan, Lisa V.; Elewa, Yaser H. A.; Fan, Dongsheng; Faruk, Mohammed; Feifei, Shi; Ferguson, Trevor S.; Fleres, Francesco; Foster, Emma J.; Foster, C. Stephen; Furer, Tzvi; Gao, Yibo; Garcia-rivera, Enid J.; Gazdar, Adi; George, Ronald B.; Ghosh, Sayantan; Gianchecchi, Elena; Gleason, Joshua M.; Hackshaw, Allan; Hall, Adam; Hall, Richard; Harper, Paul; Hogg, William E.; Huang, Guangqun; Hunter, Kylie E.; Ijzerman, Adriaan P.; Jesus, Carlos; Jian, Gao; Lewis, James S., Jr.; Kanj, Souha S.; Kaur, Harsheen; Kelly, Shona; Kheir, Fayez; Kichatova, V. S.; Kiyani, Musa; Klein, Reinhild; Kovesi, Tom; Kraschnewski, Jennifer L.; Kumar, Addanki P.; Labutin, Dmitry; Lazo-langner, Alejandro; Leclercq, Guy; Li, Maoteng; Li, Qingchun; Li, Tangliang; Li, Yongzhe; Liao, Wei-ting; Liao, Zheng-yin; Lin, Jessica; Lizer, J.; Lobreglio, Giambattista; Lowies, Cher; Lu, Cheng; Majeed, Haroon; Martin, Adam; Martinez-sobrido, Luis; Meresh, Edwin; Middelveen, Marianne; Mohebbi, Alireza; Mota, Jorge; Mozaheb, Zahra; Muyaya, Ley; Nandhakumar, Amar; Ng, Sheryl H. X.; Obeidat, Monther; Oh, Deog-hwan; Owais, Mohammed; Pace-asciak, Pia; Panwar, Ajay; Park, Caroline; Patterson, Chris; Penagos-tabaree, Felipe; Pianosi, Paolo T.; Pinzi, Valentina; Pridans, Clare; Psaroulaki, Anna; Pujala, Ravi Kumar; Pulido-arjona, Leonardo; Qi, Peng-fei; Rahman, Proton; Rai, Nayanjot K.; Rassaf, Tienush; Refardt, Julie; Ricciardi, Walter; Riess, Olaf; Rovas, Alexandros; Sacks, Frank M.; Saleh, Sherif; Sampson, Christopher; Schmutz, Axel; Sepanski, Robert; Sharma, Neeraj; Singh, Manisha; Spearman, Paul; Subramaniapillai, Mehala; Swali, Ritu; Tan, Cher M.; Tellechea, Juan I.; Thomas, Lisa-marie; Tong, Xin; Veys, Ralf; Vitriol, Veronica; Wang, Horng-dar; Wang, Jinhui; Wang, Jiucun; Waugh, Jason; Webb, S. A.; Williams, Brendan A.; Workman, Alan D.; Xiang, Tingxiu; Xie, Li-xin; Xu, Jun; Xu, Taosheng; Yang, Chongjun; Yoon, Jihoon G.; Yuan, Christina M.; Zaritsky, Arno; Zhang, Yao; Zhao, Haochen; Zuckerman, Hannah; Lyu, Ran; Pullan, Wayne; Zhou, Yaoqi.
Document recommendation systems for locating relevant literature have mostly relied on methods developed a decade ago. This is largely due to the lack of a large offline gold-standard benchmark of relevant documents that cover a variety of research fields such that newly developed literature search techniques can be compared, improved and translated into practice. To overcome this bottleneck, we have established the RElevant LIterature SearcH consortium consisting of more than 1500 scientists from 84 countries, who have collectively annotated the relevance of over 180 000 PubMed-listed articles with regard to their respective seed (input) article/s. The majority of annotations were contributed by highly experienced, original authors of the seed articles....
Tipo: Text
Ano: 2019
URL: https://archimer.ifremer.fr/doc/00659/77117/78538.pdf

Genetic Manipulations of the Hyperthermophilic Piezophilic Archaeon Thermococcus barophilus
Provedor de dados: 5
Autores: Thiel, Axel; Michoud, Gregoire; Moalic, Yann; Flament, Didier; Jebbar, Mohamed.
In this study, we developed a gene disruption system for Thermococcus barophilus using simvastatin for positive selection and 5-fluoroorotic acid (5-FOA) for negative selection or counterselection to obtain markerless deletion mutants using single-and double-crossover events. Disruption plasmids carrying flanking regions of each targeted gene were constructed and introduced by transformation into wild-type T. barophilus MP cells. Initially, a pyrF deletion mutant was obtained as a starting point for the construction of further markerless mutants. A deletion of the hisB gene was also constructed in the UBOCC-3256 (Delta pyrF) background, generating a strain (UBOCC-3260) that was auxotrophic for histidine. A functional pyrF or hisB allele from T. barophilus...
Tipo: Text
Ano: 2014
URL: http://archimer.ifremer.fr/doc/00187/29818/28263.pdf

Scaling of processes shaping the clonal dynamics and genetic mosaic of seagrasses through temporal genetic monitoring
Provedor de dados: 5
Autores: Becheler, Ronan; Benkara, Elsa; Moalic, Yann; Hily, Christian; Arnaud-haond, Sophie.
Theoretically, the dynamics of clonal and genetic diversities of clonal plant populations are strongly influenced by the competition among clones and rate of seedling recruitment, but little empirical assessment has been made of such dynamics through temporal genetic surveys. We aimed to quantify 3 years of evolution in the clonal and genetic composition of Zostera marina meadows, comparing parameters describing clonal architecture and genetic diversity at nine microsatellite markers. Variations in clonal structure revealed a decrease in the evenness of ramet distribution among genets. This illustrates the increasing dominance of some clonal lineages (multilocus lineages, MLLs) in populations. Despite the persistence of these MLLs over time, genetic...
Tipo: Text
Palavras-chave: Clonality; Seagrass; Spatio-temporal genetic structure; Zostera marina.
Ano: 2014
URL: http://archimer.ifremer.fr/doc/00181/29254/32174.pdf

Biogeography Revisited with Network Theory: Retracing the History of Hydrothermal Vent Communities
Provedor de dados: 5
Autores: Moalic, Yann; Desbruyeres, Daniel; Duarte, Carlos M.; Rozenfeld, Alejandro F.; Bachraty, Charleyne; Arnaud-haond, Sophie.
Defining biogeographic provinces to understand the history and evolution of communities associated with a given kind of ecosystem is challenging and usually requires a priori assumptions to be made. We applied network theory, a holistic and exploratory method, to the most complete database of faunal distribution available on oceanic hydrothermal vents, environments which support fragmented and unstable ecosystems, to infer the processes driving their worldwide biogeography. Besides the identification of robust provinces, the network topology allowed us to identify preferential pathways that had hitherto been overlooked. These pathways are consistent with the previously proposed hypothesis of a role of plate tectonics in the biogeographical history of...
Tipo: Text
Palavras-chave: Biogeography; Deep sea ecology; Hydrothermal vents; Network analysis; Systems biology.
Ano: 2012
URL: http://archimer.ifremer.fr/doc/00063/17400/15164.pdf

Hologenome theory supported by cooccurrence networks of species-specific bacterial communities in siphonous algae (Caulerpa)
Provedor de dados: 5
Autores: Aires, Tania; Moalic, Yann; Serrao, Ester; Arnaud-haond, Sophie.
The siphonous algae of the Caulerpa genus harbor internal microbial communities hypothesized to play important roles in development, defense and metabolic activities of the host. Here, we characterize the endophytic bacterial community of four Caulerpa taxa in the Mediterranean Sea, through 16S rRNA amplicon sequencing. Results reveal a striking alpha diversity of the bacterial communities, similar to levels found in sponges and coral holobionts. These comprise (1) a very small core community shared across all hosts (&lt; 1% of the total community), (2) a variable portion (ca. 25%) shared by some Caulerpa taxa but not by all, which might represent environmentally acquired bacteria and (3) a large (&gt; 70%) species-specific fraction of the community,...
Tipo: Text
Palavras-chave: Endophytic bacteria; Bacterial community; Cooccurrence network; Modularity; Coevolution.
Ano: 2015
URL: http://archimer.ifremer.fr/doc/00277/38800/37699.pdf

Development of an Effective 6-Methylpurine Counterselection Marker for Genetic Manipulation in Thermococcus barophilus
Provedor de dados: 5
Autores: Birien, Tiphaine; Thiel, Axel; Henneke, Ghislaine; Flament, Didier; Moalic, Yann; Jebbar, Mohamed.
A gene disruption system for Thermococcus barophilus was developed using simvastatin (HMG-CoA reductase encoding gene) for positive selection and 5-Fluoroorotic acid (5-FOA), a pyrF gene for negative selection. Multiple gene mutants were constructed with this system, which offers the possibility of complementation in trans, but produces many false positives (&lt;80%). To significantly reduce the rate of false positives, we used another counterselective marker, 6-methylpurine (6-MP), a toxic analog of adenine developed in Thermococcus kodakarensis, consistently correlated with the TK0664 gene (encoding a hypoxanthine-guanine phosphoribosyl-transferase). We thus replaced pyrF by TK0664 on our suicide vector and tested T. barophilus strain sensitivity to 6-MP...
Tipo: Text
Palavras-chave: Archaea; Piezophiles; Hyperthermophiles; Genetics; Gene deletion; Deep sea; Hydrothermal vents.
Ano: 2018
URL: https://archimer.ifremer.fr/doc/00425/53679/54523.pdf

The concept of population in clonal organisms: mosaics of temporally colonized patches are forming highly diverse meadows of Zostera marina in Brittany
Provedor de dados: 5
Autores: Becheler, Ronan; Diekmann, O.; Hily, Christian; Moalic, Yann; Arnaud-haond, S.
Seagrasses structure some of the world's key coastal ecosystems presently in decline due to human activities and global change. The ability to cope with environmental changes and the possibilities for shifts in distribution range depend largely on their evolvability and dispersal potential. As large-scale data usually show strong genetic structure for seagrasses, finer-grained work is needed to understand the local processes of dispersal, recruitment and colonization that could explain the apparent lack of exchange across large distances. We aimed to assess the fine-grained genetic structure of one of the most important and widely distributed seagrasses, Zostera marina, from seven meadows in Brittany, France. Both classic population genetics and network...
Tipo: Text
Palavras-chave: Clonality; Dispersal; Ecotype; Network analysis; Population; Zostera marina.
Ano: 2010
URL: http://archimer.ifremer.fr/doc/00006/11690/8499.pdf

RNA processing machineries in Archaea: the 5′-3′ exoribonuclease aRNase J of the β-CASP family is engaged specifically with the helicase ASH-Ski2 and the 3′-5′ exoribonucleolytic RNA exosome machinery
Provedor de dados: 5
Autores: Phung, Duy Khanh; Etienne, Clarisse; Batista, Manon; Langendijk-genevaux, Petra; Moalic, Yann; Laurent, Sebastien; Liuu, Sophie; Morales, Violette; Jebbar, Mohamed; Fichant, Gwennaele; Bouvier, Marie; Flament, Didier; Clouet-d’orval, Béatrice.
A network of RNA helicases, endoribonucleases and exoribonucleases regulates the quantity and quality of cellular RNAs. To date, mechanistic studies focussed on bacterial and eukaryal systems due to the challenge of identifying the main drivers of RNA decay and processing in Archaea. Here, our data support that aRNase J, a 5′-3′ exoribonuclease of the β-CASP family conserved in Euryarchaeota, engages specifically with a Ski2-like helicase and the RNA exosome to potentially exert control over RNA surveillance, at the vicinity of the ribosome. Proteomic landscapes and direct protein–protein interaction analyses, strengthened by comprehensive phylogenomic studies demonstrated that aRNase J interplay with ASH-Ski2 and a cap exosome subunit. Finally,...
Tipo: Text
Ano: 2020
URL: https://archimer.ifremer.fr/doc/00610/72250/71056.pdf