Consulta: creatorFacets:"Pepin, Jean-francois"
Registros recuperados: 57
Data/hora: 14/06/2024 15:56:11

Rapid and sensitive detection of ostreid Herpesvirus 1 in oyster samples by real-time PCR (Poster)
Provedor de dados: 5
Autores: Pepin, Jean-francois; Riou, Antoine; Renault, Tristan.
Herpes and herpes-like virus infections have been reported in various marine mollusc species associated with high mortality rates. Following the characterisation and genome sequencing of ostreid herpesvirus 1 (OsHV-1), specific diagnostic tools have been developed based on conventional PCR techniques or in situ hybridisation. We have now developed a real-time PCR assay for rapid, sensitive and quantitative detection of OsHV-1, and compared it with a conventional PCR technique described previously. The new assay utilised SYBR® Green chemistry with specific primers C9/C10 targeting the C region, which is present in two copies in the OsHV-1 genome and encodes two proteins of unknown function. The assay was applied successfully to rapid diagnosis (100 minutes)...
Tipo: Text
Palavras-chave: Crassostrea gigas; PCR; Oyster; OsHV 1; Detection; Herpes virus 1.
Ano: 2007
URL: http://archimer.ifremer.fr/doc/2007/acte-3653.pdf

Dual transcriptomics of virus-host interactions: comparing two Pacific oyster families presenting contrasted susceptibility to ostreid herpesvirus 1
Provedor de dados: 5
Autores: Segarra, Amelie; Mauduit, Florian; Faury, Nicole; Trancart, Suzanne; Degremont, Lionel; Tourbiez, Delphine; Haffner, Philippe; Barbosa-solomieu, Valerie; Pepin, Jean-francois; Travers, Marie-agnes; Renault, Tristan.
Background:  Massive mortality outbreaks affecting Pacific oyster (Crassostrea gigas) spat in various countries have been associated with the detection of a herpesvirus called ostreid herpesvirus type 1 (OsHV-1). However, few studies have been performed to understand and follow viral gene expression, as it has been done in vertebrate herpesviruses. In this work, experimental infection trials of C. gigas spat with OsHV-1 were conducted in order to test the susceptibility of several bi-parental oyster families to this virus and to analyze host-pathogen interactions using in vivo transcriptomic approaches.  Results:  The divergent response of these oyster families in terms of mortality confirmed that susceptibility to OsHV-1 infection has a significant...
Tipo: Text
Palavras-chave: Interactions; Ostreid herpesvirus 1; Gene expression; Susceptibility; Crassostrea gigas.
Ano: 2014
URL: http://archimer.ifremer.fr/doc/00199/31029/29431.pdf

Recherche et caractérisation d'immunoglobulines dans les oeufs du loup (Dicentrarchus labrax)
Provedor de dados: 5
Autores: Pepin, Jean-francois; Breuil, Gilles; Rigobert, P; Romestand, Bernard.
The occurrence of maternal immunity transfer in Sea bass (Dicentrarchus labrax) was investigated using ELISA and Western blot technics. In order to determine the possible presence of immunoglobulin (Ig), egg proteins obtained from fertilized eggs were analyzed. After several extraction protocol assays (precipitation, chromatography), monoclonal and polyclonal antibody probes specific to Sea bass Ig allowed to confirm the presence of an immunoglobulin-like protein in eggs with very low level. Biochemical characterization was carried out using SDS-PAGE. Results indicated that egg Ig had a molecular weight of 206 kDa. They were smaller than seric IgM (800 kDa). The heavy (H) and light (L) chains of the egg Ig and of the seric IgM had similar molecular weight,...
Tipo: Text
Palavras-chave: Immunoglobuline; Transfert immunité maternelle; ELISA; Œuf; Poisson; Immunoglobulin; Maternal immunity transfer; ELISA; Eggs; Fish.
Ano: 1997
URL: http://archimer.ifremer.fr/doc/00272/38275/36458.pdf

Microbial balance, and triggering of recent mussel mortality events in France: Is there a link?
Provedor de dados: 5
Autores: Guesdon, Stephane; Travers, Marie-agnes; Hervio Heath, Dominique; Derrien, Annick; Genauzeau, Sylvie; Schmitt, Anne; Quintric, Laure; Leroi, Laura; Pepin, Jean-francois.
Since the spring of 2014, the mussel farming of Charente-Maritime and Vendée (French Atlantic coast) has experienced an unprecedented crisis. Mass mortality events of blue mussel (M. edulis) have affected livestock areas, decimating up to 100% of production in some farming areas. Investigation for infectious agents in moribund mussels revealed presence of bacteria capable of inducing mortalities. In this context, the MORBLEU research project (DPMA-Ifremer agreement) was initiated to explore potentially aggravating factors, associated or correlated with mortality of mussels. The aim of the present study is to support the hypothesis that these mortality episodes can be linked to an evolution of microbial communities. Based on historical data from Ifremer...
Tipo: Text
Ano: 2017
URL: http://archimer.ifremer.fr/doc/00415/52696/53566.pdf

Bilan 2015 du dispositif national de surveillance de la santé des mollusques marins
Provedor de dados: 5
Autores: Lupo, Coralie; Osta Amigo, Axel; Fleury, Elodie; Robert, Stephane; Garcia, Celine; Arzul, Isabelle; Baillon, Laury; Bechemin, Christian; Canier, Lydie; Chollet, Bruno; Dechamps, Lucie; Dubreuil, Christine; Faury, Nicole; Francois, Cyrille; Godfrin, Yoann; Lapegue, Sylvie; Morga, Benjamin; Travers, Marie-agnes; Tourbiez, Delphine; Masson, Jean-claude; Verin, Francoise; Cordier, Remy; Gangnery, Aline; Louis, Wilfried; Mary, Charlotte; Normand, Julien; Penot, Julia; Cheve, Julien; Dagault, Francoise; Le Jolivet, Aurore; Le Gal, Dominique; Lebrun, Luc; Bellec, Gwenael; Bouget, Jean-francois; Cochennec-laureau, Nathalie; Palvadeau, Hubert; Grizon, James; Chabirand, Jean-michel; Pepin, Jean-francois; Seugnet, Jean-luc; D'Amico, Florence; Maurer, Daniele; Le Gall, Patrik; Mortreux, Serge; Baldi, Yoann; Orsoni, Valerie; Bouchoucha, Marc; Le Roy, Valerian; Pouvreau, Stephane; Queau, Isabelle; Lamoureux, Alice.
Depuis 1992, la surveillance de la santé des mollusques marins du littoral français est assurée par le réseau de Pathologie des Mollusques (Repamo). Ses activités s’inscrivent dans le cadre de la Directive Européenne 2006/88/CE. Depuis son évaluation par la plateforme nationale d’épidémiosurveillance en santé animale en 2012, l’objectif de surveillance est la détection précoce des infections dues à des organismes pathogènes exotiques et émergents affectant les mollusques marins sauvages et d’élevage. L’année 2015 est la première année de transition pour laquelle un début d’évolution des modalités de surveillance de la santé des mollusques marins animées par l’Ifremer a été amorcé. Un dispositif hybride de surveillance a été mis en place, s’appuyant sur...
Tipo: Text
Palavras-chave: Réseau; Surveillance; Pathologie; Mollusques; Coquillages; Santé; Mortalité; Maladie.
Ano: 2016
URL: http://archimer.ifremer.fr/doc/00324/43486/42945.pdf

Ostreid herpes virus 1 infection in families of the Pacific oyster, Crassostrea gigas, during a summer mortality outbreak: Differences in viral DNA detection and quantification using real-time PCR
Provedor de dados: 5
Autores: Sauvage, Christopher; Pepin, Jean-francois; Lapegue, Sylvie; Boudry, Pierre; Renault, Tristan.
Ostreid herpes virus 1 (OsHV-1) infections, notably reported in Europe and the USA, are closely associated with significant mortalities of the Pacific oyster, Crassostrea gigas, especially during its early stages of life. In summer 2006, we monitored mortality by strict daily verification of three full-sib families of oysters reared under common conditions. We quantified OsHV-1 using real-time PCR in dead and living individuals during and after a mortality event. Mortality events were severe and brief, but significantly different between tested families (cumulative mortality ranging from 1.2 to 49%). Real-time PCR assays revealed different viral DNA loads in dead individuals from different families (P &lt; 0.001). Moreover, the mean level of infection...
Tipo: Text
Palavras-chave: Viral DNA quantification; Real time PCR; OsHV 1; Mortality; Crassostrea gigas.
Ano: 2009
URL: http://archimer.ifremer.fr/doc/2009/publication-6265.pdf

Mise au point d'outils de gestion des gamètes mâles d'huîtres creuses Crassostrea gigas diploïdes et tétraploïdes à des fins de conservation et de diffusion
Provedor de dados: 5
Autores: Brizard, Raphael; Boudry, Pierre; Haffray, Patrick; Labbe, C.; Suquet, Marc; Robert, Rene; Masse, G.; Pepin, Jean-francois; Saulnier, Denis.
In order to improve oyster culture, many research programs try and propose new methods aiming at improving genetically the product performances and quality (selection, polyploidisation). As for terrestrial animal production, the continuity of the different works as well as the spreading of the genetical progress would be made easier by the development of conservation techniques of the selected genotypes. Cryopreservation, which is often used in selection programs of terrestrial animals or fish farming species, is not always available for bivalves. This technique would enable the conservation of the gametes of individuals selected for their high growth potential, their resistance to diseases and/or their quality for a smaller cost and less risks than the...
Tipo: Text
Palavras-chave: Tetraploïde; Diploïde; Concervation; Spermatozoides; Cryoconservation; Génétique; Crassostrea gigas; Huîtres.
Ano: 2006
URL: http://archimer.ifremer.fr/doc/2006/acte-3339.pdf

Défi MOREST - Mortalités estivales de l'huître creuse Crassostrea gigas - Caractérisation des facteurs de risques associés aux mortalités estivales - Synthèse du thème 5 - Risque associé aux pathogènes. (La Rochelle 14-15 mars 2006)
Provedor de dados: 5
Autores: Nicolas, Jean-louis; Renault, Tristan; Gagnaire, Beatrice; Garcia, Celine; Le Roux, F; Miossec, Laurence; Pepin, Jean-francois; Saulnier, Denis.
L'un des objectifs principaux des travaux en pathologie des mollusques est d'identifier et d'étudier des agents infectieux capables d'induire des maladies et des mortalités chez les coquillages, en particulier, chez I'huître creuse, Crassostrea gigas, espèce principalement exploitée en France. Ces travaux semblent d'autant plus indispensables qu'il n'existait pas, jusqu'à ces dernières années, de maladies identifiées chez I'huître creuse en Europe excepté le virus herpès suspecté dès 1995 de provoquer des mortalités de naissain (Renault et al, 1995). Les principales maladies des espèces proches sont dues à des parasites comme Haplosporidium nelsoni (Ford et Heskin, 1987) et Perkinsus marinus Olivier et al, 1 998) pour Crassostrea virginica, Marteilia...
Tipo: Text
Ano: 2006
URL: http://archimer.ifremer.fr/doc/00304/41535/40743.pdf

Summer mortality outbreaks of French Pacific oysters Crassostrea gigas in 2008 and 2009
Provedor de dados: 5
Autores: Renault, Tristan; Allain, Gwenhael; Arzul, Isabelle; Chollet, Bruno; Cobret, Laetitia; De Decker, Sophie; Faury, Nicole; Ferrand, Sylvie; Francois, Cyrille; Garcia, Celine; Haffner, Philippe; Joly, Jean-pierre; Miossec, Laurence; Morga, Benjamin; Nicolas, Jean-louis; Omnes, Emmanuelle; Pepin, Jean-francois; Saulnier, Denis; Schikorski, David; Segarra, Amelie.
Abnormal mortality outbreaks occurred in the majority of Pacific oyster (Crassostrea gigas) producing areas in France in 2008 during the summer period. These outbreaks were usually sudden and severe (up to 100%) and affected essentially spat (oysters less than 1 year-old) and juveniles (12 to 18 month-old oysters). Crassostrea gigas was the single affected species Mortality outbreaks were first observed from mid May to mid June in Brittany, Vendée, Charente Maritime and Mediterranean coast A second episode of massive mortality events was reported at the end of June and the beginning of July. All oyster production sites were affected except some particular locations including Arcachon Bay and Brittany. Mortality occurred latter in Arcachon Bay in August....
Tipo: Text
Palavras-chave: Abnormal mortality; Oysters; Crassostrea gigas; Pathogens.
Ano: 2009
URL: http://archimer.ifremer.fr/doc/00014/12554/9420.pdf

Projet de recherche "MORBLEU". Environnement des écosystèmes mytilicoles et crises de mortalité récentes, quelles interactions? Etude des facteurs pouvant favoriser les surmortalités de moules bleues (Mytilus edulis) dans les pertuis charentais et en Vendée (2014-2016)
Provedor de dados: 5
Autores: Pepin, Jean-francois; Travers, Marie-agnes.
Durant l’hiver 2014 jusqu’à mai 2014, des mortalités exceptionnelles (50-100%) ont affectées la moule bleue, Mytilus edulis dans les Pertuis Charentais (principalement secteur du Pertuis Breton) et en Vendée. A la demande du Ministère (DPMA) une expertise environnementale a été demandée à l’Ifremer. L’expertise a permis de montrer que les conditions hydrologiques de l’hiver 2014 ne permettent pas de mettre en évidence une cause environnementale à ces mortalités exceptionnelles. Les analyses en pathologie réalisées ont révélées dans les moules la présence de bactéries appartenant au groupe bactérien Vibrio splendidus, dont la virulence a été confirmée expérimentalement. Dans ce contexte, la DPMA a sollicité l’Ifremer pour conduire en 20105 une étude...
Tipo: Text
Ano: 2016
URL: http://archimer.ifremer.fr/doc/00361/47174/47141.pdf

Short Technical Report for OsHV-1 detection and quantification by Real Time Polynerase Chain Reaction using OsHV-1 DNA polymerase sequence
Provedor de dados: 5
Autores: Pepin, Jean-francois.
The present report completes a previously described procedure routinely used for the detection and quantification of OsHV-1 by Sybr green Real Time Polymerase Chain Reaction targeting the OsHV-1 DNA polymerase sequence. More particularly, this document brings information about analytical sensitivity, quantitation limit, assay precision, reproducibility of the technique.
Tipo: Text
Palavras-chave: PCR quantitative HDP-F/R; Virus OsHV-1; Diagnostic; DNA polymerase; Validation; Real-Time PCR HDP-F/R; OsHV-1; Diagnostic; DNA polymerase; Validation.
Ano: 2013
URL: http://archimer.ifremer.fr/doc/00137/24814/22900.pdf

Development of a new diagnostic tool (Mini-Array) for ostreid Herpesvrus 1 (OsHV-1) detection in the Pacific oyster Crassostre gigas
Provedor de dados: 5
Autores: Varsamos, S.; Pepin, Jean-francois; Sauvage, Christopher; Renault, Tristan.
OsHV-1 was the first herpesvirus to be identified in an invertebrate host and is associated to mortalities in the Pacific oyster (Crassostrea gigas) and other economically important bivalve species. Infections due to OsHV-1 are frequently reported and cause high mortality rates in larvae and spat of C. gigas. Detection of this pathogen is usually performed by PCR and/or in situ hybridization. This presentation will focus on the development of a new molecular diagnostic tool for OsHV-1 (and OsHV-1 variant 1) detection: the mini-array. This detection system, which allows multiple pathogens detection, combines viral DNA amplification by PCR and a specific hybridisation on a nylon membrane, revealed by a colorimetric reaction (DNA chip). Multiplex PCR involves...
Tipo: Text
Palavras-chave: Diagnostic; Crassotrea gigas; Oyster; Detection; Herpesviridae; OsHV 1.
Ano: 2007
URL: http://archimer.ifremer.fr/doc/2007/acte-3652.pdf

Experimental ostreid herpesvirus 1 infection of the Pacific oyster Crassostrea gigas: Kinetics of virus DNA detection by q-PCR in seawater and in oyster samples
Provedor de dados: 5
Autores: Schikorski, David; Faury, Nicole; Pepin, Jean-francois; Saulnier, Denis; Tourbiez, Delphine; Renault, Tristan.
Herpes- and herpes-like viruses are known to infect a wide range of bivalve mollusc species throughout the world. Abnormal summer mortalities associated to the detection of ostreid herpesvirus 1 (OsHV-1) have been currently reported in France among larvae and spat of the Pacific cupped oyster Crassostrea gigas.  In the present work, we have developed an experimental protocol of horizontal transmission based on the cohabitation between healthy and experimentally infected oysters. Through a cohabitation trial, the kinetics of OsHV-1 detection in different oyster organs and seawater samples were investigated and characterized for the first time using real time quantitative PCR.
Tipo: Text
Palavras-chave: Ostreid herpesvirus 1; Cupped Pacific oyster; Crassostrea gigas; Experimental infection; Kinetic viral DNA quantification.
Ano: 2011
URL: http://archimer.ifremer.fr/doc/00025/13607/10688.pdf

Rapport de synthèse sur la communication et la valorisation des données liées à l’étude MORBLEU et aux mortalités de moules bleues en France
Provedor de dados: 5
Autores: Pepin, Jean-francois.
Ce rapport s’inscrit dans le cadre du projet MORBLEU mené par l’Ifremer entre 2015 et 2019 en réponse à une demande de la DPMA. Ce document présente une synthèse des éléments de communication et de valorisation des données et des connaissances, liées à l’étude MORBLEU et aux mortalités de moules bleues en France sur cette période.
Tipo: Text
Palavras-chave: Restitution; Communication; Valorisation; Rapport de synthèse; Étude MORBLEU; Presse; Moules; Mytilus sp; Mortalité.
Ano: 2020
URL: https://archimer.ifremer.fr/doc/00668/77962/80173.pdf

Compte rendu final du projet Triplofimer : Fiabilité et qualité de la production de naissains triploïdes d'huître creuse (Crassostrea gigas)
Provedor de dados: 5
Autores: Suquet, Marc; Agogue, Julie; Brizard, Raphael; Haffray, Pierrick; Labbe, Catherine; Le Coz, Jean-rene; Pepin, Jean-francois; Rault, Paul; Saulnier, Denis.
Ce rapport fait état d'une étude réalisée au laboratoire de Génétique et Pathologie de l'IFREMER dans le cadre de l'analyse d'épisodes de mortalité anormale survenue en écloserie privée de crevettes pénéides. Plusieurs hypothèses ont été avancées. La présence de Vibrio harveyi a amené à constituer une collection de 40 souches à partir desquelles une identification bactériologique a été effectuée. Elle montre en effet une dominance de souches appartenant à un groupe homogène de Vibrio harveyi. La technique de ribotypage (digestion d'ADN génomique, transfert de Southem-blot et hybridation avec une sonde spécifique) est alors mise en place. Plusieurs difficultés techniques ont ralenti l'analyse et n'ont donc pas permis d'avoir des résultats assez avancés pour...
Tipo: Text
Palavras-chave: Huître creuse; Crassostrea gigas; Tétraploïdes; Sperme; Conservation; Diagnostic zoo-sanitaire; Flore bactérienne; Herpès virus.
Ano: 2007
URL: http://archimer.ifremer.fr/doc/00304/41554/40762.pdf

New Insight for the Genetic Evaluation of Resistance to Ostreid Herpesvirus Infection, a Worldwide Disease, in Crassostrea gigas
Provedor de dados: 5
Autores: Degremont, Lionel; Lamy, Jean-baptiste; Pepin, Jean-francois; Travers, Marie-agnes; Renault, Tristan.
The Pacific oyster, Crassostrea gigas, is the most important commercial oyster species cultivated in the world. Meanwhile, the ostreid herpesvirus 1 (OsHV-1) is one of the major pathogens affecting the Pacific oyster, and numerous mortality outbreaks related to this pathogen are now reported worldwide. To assess the genetic basis of resistance to OsHV-1 infection in spat C. gigas and to facilitate breeding programs for such a trait, if any exist, we compared the mortality of half- and full-sib families using three field methods and a controlled challenge by OsHV-1 in the laboratory. In the field, three methods were tested: (A) one family per bag; (B) one family per small soft mesh bag and all families inside one bag; (C) same as the previous methods but...
Tipo: Text
Ano: 2015
URL: http://archimer.ifremer.fr/doc/00269/38066/36178.pdf

Recherches d'ADN d'hepès virus infectant les mollusques dans les populations d'huîtres en milieu naturel et dans leur environnement
Provedor de dados: 5
Autores: Pepin, Jean-francois; Solliec, Gaelle; Vigneron, Vassilia; Thebault, Anne; Lamothe, Julien; Renault, Tristan.
The presence of a herpes-type virus has been demonstrated in various species of marine shellfish (bivalves and gastropoda) throughout different regions of the world (Europe, North and South America, Asia, Australia), and is frequently associated with high mortality levels. Nevertheless, apart from the sanitary monitoring in mollusc farming, very little data is available about the detection of this type of virus in the natural populations of bivalves and about the persistence of such viruses in sea water. Various diagnostic tools have been developed in order to detect the oyster herpes virus (Ostreid herpesvirus, OsHV). The presence of this virus has been looked for by PCR in marine water samples coming from fattening ponds, in order to precise the natural...
Tipo: Text
Palavras-chave: Levures; Eau de mer; Diagnostic; Huîtres; Mollusques; OsHV; Herpèsvirus.
Ano: 2008
URL: http://archimer.ifremer.fr/doc/2008/acte-3716.pdf

Experimental infection of Pacific oyster Crassostrea gigas spat by ostreid herpesvirus 1: demonstration of oyster spat susceptibility
Provedor de dados: 5
Autores: Schikorski, David; Renault, Tristan; Saulnier, Denis; Faury, Nicole; Moreau, Pierrick; Pepin, Jean-francois.
In 2008 and 2009, acute mortalities occurred in France among Pacific cupped oyster, Crassostrea gigas, spat. Different hypothesis including the implication of environmental factors, toxic algae and/or pathogens have been explored. Diagnostic tests indicated that OsHV-1 including a particular genotype, termed OsHV-1 mu Var, was detected in most of samples and especially in moribund oysters with the highlighting of virus particles looking like herpes viruses by TEM examination. In this study, an experimental protocol to reproduce OsHV-1 infection in laboratory conditions was developed. This protocol was based on the intramuscular injection of filtered (0.22 mu m) tissue homogenates prepared from naturally OsHV-1 infected spat collected on French coasts...
Tipo: Text
Ano: 2011
URL: http://archimer.ifremer.fr/doc/00037/14795/12104.pdf

Mass mortalities of Pacific oysters Crassostrea gigas reflect infectious diseases and vary with farming practices in the Mediterranean Thau lagoon, France
Provedor de dados: 5
Autores: Pernet, Fabrice; Barret, Jean; Le Gall, Patrik; Corporeau, Charlotte; Degremont, Lionel; Lagarde, Franck; Pepin, Jean-francois; Keck, Nicolas.
Experiments were conducted to investigate the effects of farming sites, seeding date, age of oysters, ploidy level and rearing structures on mortality, pathogens and energetic reserves of oysters Crassostrea gigas. Mortality of oysters coincided with infections involving, primarily, the ostreid herpesvirus OsHV-1 and, secondarily, bacteria of the group Vibrio splendidus, when seawater temperature was between 17 and 24°C. Mortality started in early May and lasted until late September, with an interruption in July and August when seawater temperatures rose above 24°C. Mortality varied with farming site: oysters maintained in the open Mediterranean Sea showed no mortality and OsHV-1 was occasionally detected at a low level only, while oysters maintained in...
Tipo: Text
Palavras-chave: Pacific oyster; Mortality; Disease; Farming practices; Hydrodynamics; Energetic.
Ano: 2012
URL: http://archimer.ifremer.fr/doc/00086/19739/17379.pdf

Mortalité du naissain d’Huître creuse Crassostrea gigas dans l’étang de Thau en 2009
Provedor de dados: 5
Autores: Pernet, Fabrice; Barret, Jean; Le Gall, Patrik; Malet, Nathalie; Pastoureaud, Annie; Munaron, Dominique; De Lorgeril, Julien; Bachere, Evelyne; Vaquer, Andre; Huvet, Arnaud; Corporeau, Charlotte; Normand, Julien; Boudry, Pierre; Moal, Jeanne; Quere, Claudie; Quilien, Virgile; Daniel, Jean-yves; Pepin, Jean-francois; Saulnier, Denis; Gonzalez, Jean-louis.
This study was conducted in the Mediterranean area during a mass mortality event of Pacific oyster Crassostrea gigas. The objectives of this work were to increase our understanding of the mass mortality phenomena in Pacific oysters, to identify risky cultivation practises and to propose mitigation strategies. In the first part of this work, we followed environmental parameters of the Thau lagoon in relation with mortality events. Then, we compared mortality and growth parameters of oysters as a function of their origins, their development stages and cultivation sites in relation with energetic, reproduction and pathogens. Finally, we conducted transfer experiments where oysters maintained free of mortality in open sea were transferred in the Thau lagoon...
Tipo: Text
Ano: 2010
URL: http://archimer.ifremer.fr/doc/00002/11354/7927.pdf

Les surmortalités des naissains d’huîtres creuses, Crassostrea gigas : acquis des recherches en 2010
Provedor de dados: 5
Autores: Cochennec-laureau, Nathalie; Baud, Jean-pierre; Pepin, Jean-francois; Benabdelmouna, Abdellah; Soletchnik, Patrick; Lupo, Coralie; Garcia, Celine; Arzul, Isabelle; Boudry, Pierre; Huvet, Arnaud; Pernet, Fabrice; Bachere, Evelyne; Bedier, Edouard; Petton, Bruno; Gaussem, Florian; Stanisiere, Jean-yves; Degremont, Lionel.
Depuis 2008, la filière ostréicole française doit faire face à des surmortalités exceptionnelles des naissains d’huîtres creuses, Crassostrea gigas, (huîtres de moins d’un an) comprises entre 60 et 90% dans tous les sites d’élevage. Des cas de mortalité similaires ont été décrits en Irlande, dans les îles anglo-normandes, au Portugal en 2009 et au Royaume-Uni en 2010. Récemment deux épisodes de mortalité, associés à la présence d’un virus OsHV1 μvar (ou un variant très proche) ont été également décrits en Nouvelle Zélande (décembre 2010) et en Australie (janvier 2011) soulignant la vulnérabilité de la filière ostréicole dans le monde. L’objectif de ce document est de faire un point sur les recherches menées depuis l’apparition de ce phénomène et de...
Tipo: Text
Ano: 2011
URL: http://archimer.ifremer.fr/doc/00033/14423/11719.pdf

Husbandry stress during early life stages affects the stress response and health status of juvenile sea bass, Dicentrarchus labrax
Provedor de dados: 5
Autores: Varsamos, S; Flik, G; Pepin, Jean-francois; Bonga, S; Breuil, Gilles.
In aquaculture management it is important to establish objective criteria to assess health and welfare of the fish. Here we show that European sea bass (Dicentrarchus labrax) confronted with husbandry-associated stress (tank cleaning, i.e. scrubbing, and water temperature variation) during early life stages show poorer survival and disease resistance as juveniles. We evaluated several parameters for stress (plasma cortisol, glucose and lactate, hydromineral status), growth performance, the immune response (plasma IgM levels) and the effects of a nodavirus challenge. Principal component analysis allowed the establishment of a stress panel including plasma cortisol, osmolality, IgM levels and weight. Sea bass juveniles reared during early life in high and...
Tipo: Text
Palavras-chave: Dicentrarchus labrax; Nodavirus challenge; Scrubbing; Temperature; Welfare; Health; Allostasis; Stress.
Ano: 2006
URL: http://archimer.ifremer.fr/doc/2006/publication-2395.pdf

Bilan 2009 du réseau REPAMO - Réseau national de surveillace de la santé des mollusques marins
Provedor de dados: 5
Autores: Francois, Cyrille; Joly, Jean-pierre; Garcia, Celine; Miossec, Laurence; Saulnier, Denis; Pepin, Jean-francois; Arzul, Isabelle; Omnes, Emmanuelle; Tourbiez, Delphine; Faury, Nicole; Haffner, Philippe; Chollet, Bruno; Robert, Maeva; Cobret, Laetitia; Renault, Tristan; Rauflet, Fabienne; Le Gagneur, Eric; Ropert, Michel; Mouillard, Gilbert; Gerla, Daniel; Annezo, Jean-pierre; Le Gal, Dominique; Langlade, Aime; Bedier, Edouard; Breerette, Stephane; Chabirand, Jean-michel; Grizon, James; Robert, Stephane; Courtois, Olivier; Rumebe, Myriam.
Créé en 1992, le réseau REPAMO (REseau de PAthologie des MOllusques) est un réseau de surveillance de la santé des mollusques marins du littoral français. Son activité s'inscrit dans le cadre de la Directive Européenne 2006/88/CE. Les objectifs du réseau sont de prévenir l'introduction et la propagation d'organismes pathogènes, en particulier ceux à déclaration obligatoire et de surveiller l'évolution de ceux déjà présents sur le territoire national. Ces activités font parties des missions institutionnelles de l'IFREMER. La surveillance assurée par le réseau vise en premier lieu les infections à déclaration obligatoire présentes en France, la bonamiose à Banamia ostreae chez l'huître plate Ostrea edulis et la marteiliose à Marteilia refringens chez...
Tipo: Text
Palavras-chave: Réseau; Surveillance; Pathologie; Mollusques; Coquillages; Etat de santé.
Ano: 2010
URL: http://archimer.ifremer.fr/doc/00086/19711/17352.pdf

Bilan des « Journées Surmortalité des huîtres creuses, Crassostrea gigas » du Programme P7 « Aquaculture Durable » des 8 et 9 décembre 2009
Provedor de dados: 5
Autores: Cochennec-laureau, Nathalie; Baud, Jean-pierre; Bedier, Edouard; Boudry, Pierre; Huvet, Arnaud; Nicolas, Jean-louis; Pepin, Jean-francois; Petton, Bruno.
Ce bilan comprend deux parties : la première est dédiée à une synthèse des travaux présentés lors des journées « Surmortalités des huîtres creuses, Crassostrea gigas » les 8 et 9 décembre 2009 et, la seconde partie, à une proposition d'un projet de recherche spécifique 2010-2012 en complément des propositions de « sortie de crise ».  Contexte Les mortalités estivales de l'huître creuse, Crassostrea gigas, sont décrites depuis une vingtaine d'années en France mais également au Japon, en Corée, aux USA et en Australie. Ces phénomènes ou « syndrome des mortalités estivales » ont fait l'objet d'une étude pluridisciplinaire en France entre 2001 et 2006 (Défi MOREST). Toutefois, en 2008 et 2009, l'ostréiculture française a du faire face à deux épisodes de...
Tipo: Text
Ano: 2010
URL: http://archimer.ifremer.fr/doc/2010/acte-7393.pdf

Rapid and sensitive detection of ostreid herpesvirus 1 in oyster samples by real-time PCR
Provedor de dados: 5
Autores: Pepin, Jean-francois; Riou, Antoine; Renault, Tristan.
Herpes and herpes-like virus infections have been reported in various marine mollusc species associated with high mortality rates. Following the characterisation and genome sequencing of ostreid herpesvirus 1 (OsHV-1), specific diagnostic tools have been developed based on conventional PCR techniques or in situ hybridisation. We have now developed a real-time PCR assay for rapid, sensitive and quantitative detection of OsHV-1, and compared it with a conventional PCR technique described previously. The new assay utilised SYBR® Green chemistry with specific primers C9/C10 targeting the C region. The melt curve analysis of OsHV-1 DNA or DNA extracted from infected material showed only one melting temperature peak (75.75 ± 0.1 °C). The assay had a detection...
Tipo: Text
Palavras-chave: SYBR® Green; Real time PCR; Crassostrea gigas; Ostreid herpesvirus 1; Herpesvirus.
Ano: 2008
URL: http://archimer.ifremer.fr/doc/2008/publication-3951.pdf

Detection of ostreid herpesvirus 1 DNA by PCR in bivalve molluscs: A critical review
Provedor de dados: 5
Autores: Batista, Frederico; Arzul, Isabelle; Pepin, Jean-francois; Ruano, Francisco; Friedman, Carolyn S.; Boudry, Pierre; Renault, Tristan.
Herpes-like viral infections have been reported in different bivalve mollusc species throughout the world. High mortalities among hatchery-reared larvae and juveniles of different bivalve species have been associated often with such infections. The diagnosis of herpes-like viruses in bivalve molluscs has been performed traditionally by light and transmission electron microscopy. The genome sequencing of one of these viruses, oyster herpesvirus 1 (OsHV-1), allowed the development of DNA-based diagnostic techniques. The polymerase chain reaction (PCR) has been used for the detection of OsHV-1 DNA in bivalve molluscs at different development stages. In addition, the PCR used for detection of OsHV-1 has also allowed the amplification of DNA from an OsHV-1...
Tipo: Text
Palavras-chave: Oyster; Bivalve molluscs; PCR; Detection; OsHV 1; Herpesvirus.
Ano: 2007
URL: http://archimer.ifremer.fr/doc/2007/publication-2322.pdf

Disinfectants and antiseptics used in mollusc hatcheries and nurseries
Provedor de dados: 5
Autores: Francois, Cyrille; Pepin, Jean-francois.
Increasing development of aquaculture business has thrown up new requirements in terms of prevention and control of mollusc diseases. In closed structures, one way to reduce infectious risk is to make use of anti-infectives . Specific drugs like antibiotics should be used only for therapeutic purpose against identified agents. Less specific anti-infectives like disinfectants could be employed for preventive and also for curative goals against causal pathogens and opportunist agents. A critical analysis synthesizes the bibliography available on disinfection in mollusc hatcheries and nurseries. Physical and chemical tools are reviewed then selected depending on four criteria: (1) efficiency against most important pathogens of molluscs, (2) safety for...
Tipo: Text
Palavras-chave: Antiseptics; Disinfectants; Nurseries; Hatcheries.
Ano: 2005
URL: http://archimer.ifremer.fr/doc/2005/acte-3312.pdf

Situation of wild beds of Crassostrea gigas regarding OsHV-1 µvar: spatiotemporal description of contamination in Pacific oyster wild beds in Marennes Oleron Bay
Provedor de dados: 5
Autores: Pepin, Jean-francois; Soletchnik, Patrick; Lupo, Coralie; Geairon, Philippe; Seugnet, Jean-luc; Robert, Stephane; Bernard, Ismal; Le Moine, Olivier.
This study focuses on the situation of wild oyster beds of Crassostrea gigas against OsHV-1 μvar and presents a spatio-temporal description of the OsHV-1 contamination in wild oyster beds in the bay of Marennes-Oléron from a range of sampling based on a hydrodynamic model and analyzes conducted in 2010. The objectives were to describe wild populations of pacific oysters in Marennes Oleron bay; to characterize these populations regarding OsHV-1 prevalence for spat and adults in connection with the isolation level from reared stocks and the sampling periods.
Tipo: Text
Palavras-chave: Virus; OsHV-1; Contamination; Oysters; Crassostrea gigas; Spatiotemporal description; Marennes Oleron Bay.
Ano: 2011
URL: http://archimer.ifremer.fr/doc/00105/21673/19251.pdf

Marine cytophaga-like bacteria (CLB) isolated from diseased reared sea bass (Dicentrarchus labrax L.) from French mediterranean coast
Provedor de dados: 5
Autores: Pepin, Jean-francois; Emery, Eric.
During spring of 1993, an epizootic outbreak occurred in a sea bass farm, located on the French Mediterranean coast. The cumulative mortality reached 25%. First examination of cutaneous lesions revealed filamentous bundles of flexuous bacteria which exhibited gliding motility. Bacterial growth was obtained only from skin lesions. The biochemical characteristics of isolates are described. Pathogenicity tests of representative slrains were carried out. Until fuller data is available, the pathogen here reported was provisionally identified as a Cytophaga·like bacterium (CLB).
Tipo: Text
Ano: 1993
URL: http://archimer.ifremer.fr/doc/00271/38252/36441.pdf

Expression de gènes viraux de l'herpès virus OsHV-1 sous sa forme µVar chez l'huître creuse, Crassostrea gigas
Provedor de dados: 5
Autores: Segarra, Amelie; Faury, Nicole; Haffner, Philippe; Pepin, Jean-francois; Tourbiez, Delphine; Trancart, Suzanne; Travers, Marie-agnes; Renault, Tristan.
Le premier cas d'infection à virus de type herpès a été rapporté en 1972, aux Etats Unis, chez l'huître américaine, Crassostrea virginica (Farley et al, 1972). A partir de 1991, des mortalités massives associées à la détection de virus de type herpes ont été observées chez plusieurs espèces de bivalves marins, à différents stades de développement (essentiellement chez les larves et le naissain) et dans différentes régions du monde. Sur la base d’observation en microscopie électronique à transmission, ces virus présentaient des caractéristiques morphologiques identiques à celles des Herpesvirus (Roizman, 1982).  Les connaissances acquises concernant la taille, la structure et le séquençage du génome d’un virus infectant les larves d’huîtres creuses en...
Tipo: Text
Palavras-chave: Herpès virus OsHV-1; Expression gènes; Huître creuse; Crassostrea gigas.
Ano: 2012
URL: http://archimer.ifremer.fr/doc/00195/30627/29076.pdf

Preliminary study of immunogenicity and protection against nodavirus following injection of synthetic peptides from its capsid protein.
Provedor de dados: 5
Autores: Coeurdacier, Jean-luc; Laporte, Florent; Pepin, Jean-francois.
Cette présentation orale aborde les aspects non traités dans la publication relative aux essais de vaccination contre la Nodavirose par peptides synthétiques (https://w3.ifremer.fr/archimer/doc/00000/10600/7038.pdf) dont évaluation par différentes méthodes de la présence ou des traces d’un contact avec le Nodavirus qu’il soit vivant (culture de cellule), sous forme de fraction protéique (ELISA antigène et PCR) ou qu’il ait laissé des traces sériques (séropositivité par ELISA anticorps) ou sous forme de vacuoles encéphaliques (immunohistochimie).
Tipo: Text
Ano: 1999
URL: http://archimer.ifremer.fr/doc/00157/26828/24943.pdf

Mortalités de moules bleues dans les secteurs mytilicoles : description et étude des facteurs liés, action –MORBLEU-2017
Provedor de dados: 5
Autores: Pepin, Jean-francois; Benabdelmouna, Abdellah; Bierne, Nicolas; Costes, Louis; Degremont, Lionel; Garcia, Celine; Guesdon, Stephane; Lamy, Jean-baptiste; Le Moine, Olivier; Morga, Benjamin; Normand, Julien; Robert, Stephane; Saunier, Alice; Soletchnik, Patrick; Travers, Marie-agnes.
Depuis 2014, des épisodes de mortalité anormale affectent les cheptels mytilicoles tant adultes que juvéniles. Dès l’année 2015, une étude spécifique cofinancée par la DPMA et réalisée par l’Ifremer a été initiée, l’action de recherche MORBLEU (Mortalité des moules Bleues). Les années 2015 et 2016 ont permis de dégager des éléments de connaissance et des pistes relatifs aux facteurs biotiques et abiotiques qui semblent intervenir dans le phénomène de hausse de mortalité des moules depuis 2014. Pour l’année 2017, les trois objectifs principaux étaient de : i) poursuivre la description du phénomène de mortalité ainsi que le contexte environnemental associé en effectuant une nouvelle campagne d’études et d’observations in situ, ii) tester des hypothèses...
Tipo: Text
Palavras-chave: Moules; Mytilus edulis; Mortalité; Statut cytogénétique; Anomalies génomiques; Populations; Facteurs environnementaux; Ecologie microbienne.
Ano: 2018
URL: https://archimer.ifremer.fr/doc/00503/61503/65337.pdf

Bilan 2012 du réseau REPAMO - Réseau national de surveillance de la santé des mollusques marins
Provedor de dados: 5
Autores: Francois, Cyrille; Joly, Jean-pierre; Garcia, Celine; Lupo, Coralie; Travers, Marie-agnes; Pepin, Jean-francois; Hatt, Philippe-jacques; Arzul, Isabelle; Omnes, Emmanuelle; Tourbiez, Delphine; Faury, Nicole; Haffner, Philippe; Huchet, Eve; Dubreuil, Christine; Chollet, Bruno; Renault, Tristan; Cordier, Remy; Hebert, Pascale; Le Gagneur, Eric; Parrad, Sophie; Gerla, Daniel; Annezo, Jean-pierre; Terre-terrillon, Aouregan; Le Gal, Dominique; Langlade, Aime; Bedier, Edouard; Hittier, Benoist; Grizon, James; Chabirand, Jean-michel; Robert, Stephane; Seugnet, Jean-luc; Rumebe, Myriam; Le Gall, Patrik; Bouchoucha, Marc; Baldi, Yoann; Masson, Jean-claude.
Créé en 1992, le réseau Repamo (REseau de PAthologie des MOllusques) est un réseau de surveillance de la santé des mollusques marins du littoral français. Son activité s’inscrit dans le cadre de la Directive Européenne 2006/88/CE. Les objectifs du réseau sont de prévenir l’introduction et la propagation d’organismes pathogènes, en particulier ceux à réglementés et de surveiller l’évolution de ceux déjà présents sur le territoire national. Ces activités font partie des missions institutionnelles de l’IFREMER.   L’étude des hausses de mortalités (protocole II) a été poursuivie avec 52 interventions complètes ayant conduit au recueil de commémoratifs et à la réalisation d’échantillons de mollusques marins pour analyses en pathologie. Des hausses de mortalités...
Tipo: Text
Palavras-chave: Réseau; Pathologie; Mollusques; Coquillages; Santé; Surveillance.
Ano: 2013
URL: http://archimer.ifremer.fr/doc/00143/25470/23625.pdf

Is horizontal transmission of the Ostreid herpesvirus OsHV-1 in Crassostrea gigas affected by unselected or selected survival status in adults to juveniles?
Provedor de dados: 5
Autores: Degremont, Lionel; Guyader, Tanguy; Tourbiez, Delphine; Pepin, Jean-francois.
Massive mortality outbreaks, mostly affecting spat Crassostrea gigas, have been reported in France since 2008. Disease investigations revealed that most of the mortality events are related to the detection of the Ostreid herpesvirus 1 (OsHV-1 μVar). Meanwhile, selection to improve the survival in juvenile C. gigas has been successfully implemented in this context and selected oysters were found disease-resistant to OsHV-1 infection. This paper reports the first investigation of the horizontal transmission of the disease throughout cohabitation trials within batch and between batches using unselected and selected oysters for their higher survival. Two batches, unselected (AC) and selected (AR), were produced in February 2009 and deployed in the field in...
Tipo: Text
Palavras-chave: Crassostrea gigas; Disease resistance; Ostreid herpesvirus OsHV-1; Horizontal transmission; Pacific oyster.
Ano: 2013
URL: http://archimer.ifremer.fr/doc/00142/25310/23383.pdf

Mortalités massives de l’Huître creuse. Synthèse - Rapport final des études menées sur les mortalités de naissains d’huîtres creuses C. gigas sur le littoral charentais pour la période de 2007 à 2012
Provedor de dados: 5
Autores: Pepin, Jean-francois; Soletchnik, Patrick; Robert, Stéphane.
Since 2008, the French oyster-farming sector has been confronted with exceptionally high rates of mortality affecting spats (less than one year old) of the Pacific oyster, C. gigas, of between 60 and 90% at all rearing sites and in Pertuis Charentais sea. The objective of this document is to provide an overview of the research and studies carried out by Ifremer in Poitou-Charentes since the emergence of this phenomenon. The actions presented were funded by IFREMER, and CPER Poitou-Charentes 2007-2013.
Tipo: Text
Palavras-chave: Huître creuse; Naissain; Surmortalité; Virus herpès; Vibrions; Environnement; Pertuis charentais; Pacific oyster; Spat; Mortality; Herpes virus; Vibrios; Environment; Pertuis charentais.
Ano: 2014
URL: http://archimer.ifremer.fr/doc/00217/32856/31335.pdf

Observer, Analyser et Gérer la variabilité de la reproduction et du recrutement de l’huître creuse en France : Le Réseau Velyger. Rapport annuel 2014
Provedor de dados: 5
Autores: Pouvreau, Stephane; Petton, Sebastien; Queau, Isabelle; Haurie, Axel; Le Souchu, Pierrick; Alunno-bruscia, Marianne; Palvadeau, Hubert; Auby, Isabelle; Maurer, Daniele; D'Amico, Florence; Passoni, Sarah; Barbier, Claire; Tournaire, Marie-pierre; Rigouin, Loic; Rumebe, Myriam; Fleury, Elodie; Fouillaron, Pierre; Bouget, Jean-francois; Pepin, Jean-francois; Robert, Stephane; Grizon, James; Seugnet, Jean-luc; Chabirand, Jean-michel; Le Moine, Olivier; Guesdon, Stephane; Lagarde, Franck; Mortreux, Serge; Le Gall, Patrik; Messiaen, Gregory; Roque D'Orbcastel, Emmanuelle; Quemener, Loic; Repecaud, Michel; Mille, Dominique; Geay, Amelie; Bouquet, Anne-lise.
La conchyliculture, et principalement l’élevage de l’huître creuse, Crassostrea gigas, constitue la principale activité aquacole française. Cette activité repose, en grande partie, sur le recrutement naturel de l’espèce qui assure 70% des besoins en jeunes huîtres (naissain) : cette activité de collecte s’appelle le captage. Les deux principaux centres de captage en France sont les bassins d’Arcachon et de Marennes-Oléron. Or, depuis une dizaine d'années, sur le bassin d'Arcachon, le captage devient très variable: à des années de captage nul (par exemple les années 2002, 2005, 2007) ou faible (2009, 2010, 2011) succèdent des années excellentes voire pléthoriques (les années 2003, 2006, 2008, 2012, 2013). A Marennes-Oléron, cette variabilité existe, mais...
Tipo: Text
Palavras-chave: Huître creuse; Naissain; Recrutement; Captage; Larves; Cycle de reproduction; Changement climatique; Pacific oyster; Spat; Recruitment; Spat collecting; Larvae; Reproductive cycle; Climate change.
Ano: 2015
URL: http://archimer.ifremer.fr/doc/00279/38990/37561.pdf

Mortalités massives de l'huître creuse - Rapport final du programme de recherche sur l'étude de la cinétique de détection d'agents infectieux associés à des épisodes de mortalités de naissains d'huîtres creuses Crassostrea gigas sur un site ostréicole de Marennes-Oléron (CIDAGINF 2009-2010)
Provedor de dados: 5
Autores: Saulnier, Denis; Pepin, Jean-francois; Guesdon, Stephane; Degremont, Lionel; Faury, Nicole; Haffner, Philippe; Renault, Tristan; Travers, Marie-agnes; Tourbiez, Delphine; Geairon, Philippe; Le Moine, Olivier; Seugnet, Jean-luc; Soletchnik, Patrick.
This study aims to improve understanding of causes of mortalities in oyster Crassostrea gigas in pertuis charentais related to environmental parameters and the kinetics of targeted infectious agents, such as bacteria Vibrio splendidus (group ) and V. aestuarianus and Ostreid herpesvirus OsHV-1. Two sampling campaigns were carried out on the site of Agnas in 2009 and 2010, before, during or following mortality events of spat from March to September. The approach is to detect and quantify in short time step infectious agents from tissues of farmed oysters placed on rack and in various samples taken nearby: native oysters and other species (wild mussels and barnacles), seawater and sediment. With physical and chemical automatic probes placed on the site,...
Tipo: Text
Palavras-chave: Huître creuse; Crassostrea gigas; Mortalité; Virus herpès; Vibrions; Environnement; Pertuis Charentais; Pacific oyster; Crassostrea gigas; Mortality; Herpes virus; Vibrios; Environment; Pertuis Charentais.
Ano: 2011
URL: http://archimer.ifremer.fr/doc/00058/16920/14400.pdf

Does global warming favour the occurrence of recent blue mussel mortality events in France?
Provedor de dados: 5
Autores: Pepin, Jean-francois; Soletchnik, Patrick; Le Moine, Olivier; Polsenaere, Pierre; Genauzeau, Sylvie; Robert, Stephane; Grizon, James; Seugnet, Jean-luc; Schmitt, Anne; Chabirand, Jean-michel; Tourbiez, Delphine; Travers, Marie-agnes; Guesdon, Stephane.
We report in this work data of two independent studies carried out in the Pertuis Charentais for which a link might exist? A 30-years local time series study of hydro-climatic variations in water temperature and salinity, which show a significant warming of the water masses in the Marennes Oleron bay (+ 1.5 °C) associated with a significant drop ( &gt; -15%) of freshwater intakes by nearby rivers. In this changing local climate context several major epizootics have appeared, severely affecting farmers and the production of Pacific oysters and mussels, from the first French shellfish-producing department (catching and growing, Agreste, 2012). Following massive mortality event of blue mussels in 2014, a specific study (MORBLEU) is conducted, trying to...
Tipo: Text
Ano: 2017
URL: http://archimer.ifremer.fr/doc/00415/52697/53567.pdf

Bilan 2008 du réseau REPAMO - Réseau national de surveillance de la santé des mollusques marins
Provedor de dados: 5
Autores: Francois, Cyrille; Garcia, Celine; Arzul, Isabelle; Joly, Jean-pierre; Miossec, Laurence; Chollet, Bruno; Ferrand, Sylvie; Robert, Maeva; Tourbiez, Delphine; Omnes, Emmanuelle; Cobret, Laetitia; Faury, Nicole; Haffner, Philippe; Saulnier, Denis; Pepin, Jean-francois; Renault, Tristan; Antajan, Elvire; Rauflet, Fabienne; Ropert, Michel; Mouillard, Gilbert; Gerla, Daniel; Annezo, Jean-pierre; Le Gal, Dominique; Langlade, Aime; Bedier, Edouard; Nourry, Max; Chabirand, Jean-michel; Fillon, Alain; Robert, Stephane; Courtois, Olivier.
Créé en 1992, le réseau REPAMO (REseau de PAthologie des MOllusques) est un réseau de surveillance de la santé des mollusques marins du littoral français. Son activité s'inscrit dans le cadre de la Directive Européenne 2006/88/CE. Les objectifs du réseau sont de prévenir l'introduction et la propagation d'organismes pathogènes, en particulier ceux à déclaration obligatoire et de surveiller l'évolution de ceux déjà présents sur le territoire national. Ces activités font parties des missions institutionnelles de l'IFREMER. La surveillance assurée par le réseau vise en premier lieu les infections à déclaration obligatoire présentes en France, la bonamiose à Bonamia ostreae chez l'huître plate Ostrea edulis et la marteiliose à Marteilia refringens chez...
Tipo: Text
Palavras-chave: Réseau; Surveillance; Pathologie; Mollusques; Coquillages; Etat de santé.
Ano: 2009
URL: http://archimer.ifremer.fr/doc/00086/19709/17351.pdf

Sea bass Dicentrarchus labrax nervous necrosis virus isolates with distinct pathogenicity to sea bass larvae
Provedor de dados: 5
Autores: Breuil, Gilles; Mouchel, Olivier; Fauvel, Christian; Pepin, Jean-francois.
Reproduction of nodavirus disease was performed by experimental infection of sea bass eggs during fertilization or at larval stage 4 with 2 genetically distinguishable nodavirus strains (Sb1 and Sb2) isolated from sea bass collected along the Atlantic and Mediterranean French coast. The pathogenicity of the virus strains was assigned after detection of the virus by ELISA and immunohistochemistry (IHC). The Atlantic (Sb1) strain was more pathogenic than the Mediterranean (Sb2) strain during the fertilization step whilst both strains were pathogenic following experimental exposure of 4 d old larvae. Virus lesions developed in the brain 4 to 6 d following experimental exposure. Experimental ELISA proved very sensitive for detecting the nodavirus in Sb1 or Sb2...
Tipo: Text
Palavras-chave: ELISA; Nodavirus; Fish encephalopathy.
Ano: 2001
URL: http://archimer.ifremer.fr/doc/2001/publication-814.pdf

Les huîtres sauvages sont-elles contaminées par le virus de l’herpes (OsHV-1 microvar) dans les pertuis charentais ?
Provedor de dados: 5
Autores: Soletchnik, Patrick; Le Moine, Olivier; Lupo, Coralie; Robert, Stephane; Geairon, Philippe; Bernard, Ismael; Pepin, Jean-francois.
Tipo: Text
Ano: 2011
URL: http://archimer.ifremer.fr/doc/00442/55354/56866.pdf

Mortalités massives de l’Huître creuse: causes et perspectives
Provedor de dados: 5
Autores: Pernet, Fabrice; Barret, Jean; Le Gall, Patrik; Lagarde, Franck; Fiandrino, Annie; Huvet, Arnaud; Corporeau, Charlotte; Boudry, Pierre; Quere, Claudie; Degremont, Lionel; Pepin, Jean-francois; Saulnier, Denis; Boulet, Hélène; Keck, Nicolas.
The objectives of this study are to increase our understanding of the mass mortality phenomena in Pacific oysters Crassostrea gigas in the Thau lagoon and to examine the effect of cultivation practises. Mortality events in 2009 and 2010 always coincide with simple or dual infections involving primarily the Herpes virus OsHV-I and secondarily the bacteria Vibrio splendidus, when seawater temperature is between 17°C and 24°C. In the Thau lagoon, mortality starts early May and last until fall with an interruption period when seawater temperature is higher than 24°C in July and August. Mortality of oysters varies as a function of zootechnical life-history, hydrodynamics and cultivation practises. First, mortality depends on whether or not oysters have been...
Tipo: Text
Ano: 2011
URL: http://archimer.ifremer.fr/doc/00043/15404/12764.pdf

Bilan 2010 du réseau Repamo - Réseau national de surveillance de la santé des mollusques marins
Provedor de dados: 5
Autores: Guichard, Benjamin; Francois, Cyrille; Joly, Jean-pierre; Garcia, Celine; Saulnier, Denis; Pepin, Jean-francois; Arzul, Isabelle; Omnes, Emmanuelle; Tourbiez, Delphine; Faury, Nicole; Haffner, Philippe; Chollet, Bruno; Robert, Maeva; Renault, Tristan; Rauflet, Fabienne; Le Gagneur, Eric; Ropert, Michel; Mouillard, Gilbert; Gerla, Daniel; Annezo, Jean-pierre; Le Gal, Dominique; Langlade, Aime; Bedier, Edouard; Brerette, Stéphane; Chabirand, Jean-michel; Grizon, James; Robert, Stephane; Courtois, Olivier; Rumebe, Myriam; Cantin, Christian.
Créé en 1992, le réseau REPAMO (REseau de PAthologie des MOllusques) est un réseau de surveillance de la santé des mollusques marins du littoral français. Son activité s’inscrit dans le cadre de la Directive Européenne 2006/88/CE. Les objectifs du réseau sont de prévenir l’introduction et la propagation d’organismes pathogènes, en particulier ceux à déclaration obligatoire et de surveiller l’évolution de ceux déjà présents sur le territoire national. Ces activités font parties des missions institutionnelles de l’IFREMER. La surveillance assurée par le réseau vise en premier lieu les infections à déclaration obligatoire présentes en France, la bonamiose à Bonamia ostreae chez l’huître plate Ostrea edulis et la marteiliose à Marteilia refringens chez...
Tipo: Text
Palavras-chave: Réseau; Surveillance; Pathologie; Mollusques; Coquillages; Santé; Surveillance.
Ano: 2011
URL: http://archimer.ifremer.fr/doc/00059/17050/14599.pdf

Potential environmental drivers of a regional blue mussel mass mortality event (winter 2014, Breton Sound, France)
Provedor de dados: 5
Autores: Polsenaere, Pierre; Soletchnik, Patrick; Le Moine, Olivier; Gohin, Francis; Robert, Stephane; Pepin, Jean-francois; Stanisiere, Jean-yves; Dumas, Franck; Bechemin, Christian; Goulletquer, Philippe.
In the context of global change, increasing mariculture production has raised particular concerns regarding its environmental impact and sustainability. Molluscs and particularly blue mussel account for a significant part of this total production. Although blue mussels are considered as pretty resilient to environmental disturbances, we report in this study an unprecedented mussel mortality event that occurred during the winter 2014 in the Breton Sound. 9000 metric tonnes of mussels were lost and mortality rates up to 100% were recorded at some farming areas. Through a coupling approach, the present work aimed to better understand the potential environmental drivers associated to those mortalities. Firstly we analysed long-term in situ and satellite data...
Tipo: Text
Palavras-chave: Mytilus edulis mortalities; Climate change; Breton sound; Long-term monitoring; Hydrodynamic modelling; Vibriosis.
Ano: 2017
URL: http://archimer.ifremer.fr/doc/00376/48708/49083.pdf

Mortalités de moules bleues dans les Pertuis Charentais: description et facteurs liés – MORBLEU
Provedor de dados: 5
Autores: Travers, Marie-agnes; Pepin, Jean-francois; Soletchnik, Patrick; Guesdon, Stephane; Le Moine, Olivier.
Depuis 2014, des surmortalités anormales affectent les cheptels mytilicoles tant adultes que juvéniles avec des mortalités massives pouvant atteindre 100% (Béchemin et al. 2015). Les objectifs généraux de ce projet sont d’identifier des facteurs potentiellement corrélés avec les mortalités de moules observées dans les Pertuis Charentais: facteurs environnementaux biotiques, abiotiques et hydrodynamiques) et facteurs intrinsèques aux animaux (traits d'histoire de vie, qualité cytogénétique et physiologie). Après une introduction bibliographique complète, différentes questions sont ici abordées. 1. Historique des mortalités 2014-2015 ? Grâce { différentes sources d’information nous avons pu retracer les évènements de mortalités de 2014 et 2015 et valider...
Tipo: Text
Palavras-chave: Moules; Mytilus edulis; Fluctuations environnementales; Connectivité hydrodynamique; Populations; Qualité cytogénétique; Immunité; Physiologie.
Ano: 2016
URL: https://archimer.ifremer.fr/doc/00324/43539/43096.pdf

Observer, Analyser et Gérer la variabilité de la reproduction et du recrutement de l’huître creuse en France : Le Réseau Velyger. Rapport annuel 2013
Provedor de dados: 5
Autores: Pouvreau, Stephane; Petton, Sebastien; Queau, Isabelle; Bellec, Gwenael; Talarmain, Eric; Le Souchu, Pierrick; Alunno-bruscia, Marianne; Auby, Isabelle; Maurer, Daniele; D'Amico, Florence; Passoni, Sarah; Barbier, Claire; Tournaire, Marie-pierre; Rigouin, Loic; Rumebe, Myriam; Fleury, Elodie; Langlade, Aime; Bouget, Jean-francois; Collin, Karine; Fortune, Mireille; Palvadeau, Hubert; Bedier, Edouard; Robert, Stephane; Pepin, Jean-francois; Grizon, James; Seugnet, Jean-luc; Chabirand, Jean-michel; Le Moine, Olivier; Guesdon, Stephane; Lagarde, Franck; Mortreux, Serge; Le Gall, Patrik; Messiaen, Gregory; Roque D'Orbcastel, Emmanuelle; Quemener, Loic; Repecaud, Michel; Bucas, Karenn; Barbot, Stephane; Guillemot, Anne; Nonnotte, Lidwine; Duros, Wenceslas; Bonnat, Armel; Tarot, Stephane; Mille, Dominique; Geay, Amelie; Bouquet, Anne-lise.
La conchyliculture, et principalement l’élevage de l’huître creuse, Crassostrea gigas, constitue la principale activité aquacole française. Cette activité repose, en grande partie, sur le recrutement naturel de l’espèce qui assure 70% des besoins en jeunes huîtres (naissain) : cette activité de collecte s’appelle le captage.  Les deux principaux centres de captage en France sont les bassins d’Arcachon et de Marennes-Oléron. Or, depuis une dizaine d'années, sur le bassin d'Arcachon, le captage devient très variable: à des années de captage nul (par exemple les années 2002, 2005, 2007) ou faible (2009, 2010, 2011) succèdent des années excellentes voire pléthoriques (les années 2003, 2006, 2008, 2012, 2013). A Marennes-Oléron, cette variabilité existe, mais...
Tipo: Text
Ano: 2014
URL: http://archimer.ifremer.fr/doc/00200/31091/29499.pdf

Detection and description of a particular Ostreid herpesvirus 1 genotype associated with massive mortality outbreaks of Pacific oysters, Crassostrea gigas, in France in 2008
Provedor de dados: 5
Autores: Segarra, Amelie; Pepin, Jean-francois; Arzul, Isabelle; Morga, Benjamin; Faury, Nicole; Renault, Tristan.
Ostreid herpesvirus 1 (OsHV-1) infections have been reported around the world and are associated with high mortalities of the Pacific oyster (Crassostrea gigas). In the summer 2008, abnormal mortality rates ranging from 80% to 100% were reported in France and affected only Pacific oysters. Analyses of oyster samples collected during mortality outbreaks demonstrated a significant detection of OsHV-1 (75% of analysed batches), which appeared stronger than previous years. DNA sequencing based on C and IA regions was carried out on 28 batches of OsHV-1 infected Pacific oysters collected in 2008. Polymorphisms were described in both the C and IA regions and characterized a genotype of OsHV-1 not already reported and termed OsHV-1 μVar. A microsatellite zone...
Tipo: Text
Palavras-chave: Herpes virus; Oyster; Crassostrea gigas; OsHV-1 mu Var; Increased mortality; Microsatellites.
Ano: 2010
URL: http://archimer.ifremer.fr/doc/00011/12260/9035.pdf

Analysis of Clinical Ostreid Herpesvirus 1 (Malacoherpesviridae) Specimens by Sequencing Amplified Fragments from Three Virus Genome Areas
Provedor de dados: 5
Autores: Renault, Tristan; Moreau, Pierrick; Faury, Nicole; Pepin, Jean-francois; Segarra, Amelie; Webb, Stephen.
Although there are a number of ostreid herpesvirus 1 (OsHV-1) variants, it is expected that the true diversity of this virus will be known only after the analysis of significantly more data. To this end, we analyzed 72 OsHV-1 "specimens" collected mainly in France over an 18-year period, from 1993 to 2010. Additional samples were also collected in Ireland, the United States, China, Japan, and New Zealand. Three virus genome regions (open reading frame 4 [ORF4], ORF35, -36, -37, and -38, and ORF42 and -43) were selected for PCR analysis and sequencing. Although ORF4 appeared to be the most polymorphic genome area, distinguishing several genogroups, ORF35, -36, -37, and -38 and ORF42 and -43 also showed variations useful in grouping subpopulations of this...
Tipo: Text
Ano: 2012
URL: http://archimer.ifremer.fr/doc/00083/19445/17221.pdf

Transcriptomic study of 39 ostreid herpesvirus 1 genes during an experimental infection
Provedor de dados: 5
Autores: Segarra, Amelie; Faury, Nicole; Pepin, Jean-francois; Renault, Tristan.
Massive mortality outbreaks have been reported in France since 2008 among Pacific oysters, Crassostrea gigas, with the detection of a particular OsHV-1 variant called μVar. Virus infection can be induced in healthy spat in experimental conditions allowing to better understand the disease process, including viral gene expression.  Although gene expression of other herpesviruses has been widely studied, we provide the first study following viral gene expression of OsHV-1 over time. In this context, an in vivo transcriptomic study targeting 39 OsHV-1 genes was carried out during an experimental infection of Pacific oyster spat. For the first time, several OsHV-1 mRNAs were detected by real-time PCR at 0 h, 2 h, 4 h, 18 h, 26 h and 42 h post injection. Several...
Tipo: Text
Palavras-chave: Crassostrea gigas; OsHV-1; Viral gene expression; Inhibitors of apoptosis; Real time PCR; Elongation factor.
Ano: 2014
URL: http://archimer.ifremer.fr/doc/00184/29549/27875.pdf

Evaluation of mussels seed survival Mytilus edulis during early period of collection, development of a new tool and method
Provedor de dados: 5
Autores: Pepin, Jean-francois; Robert, Stephane; Soletchnik, Patrick; Seugnet, Jean-luc; Morin, Dimitri; Chabirand, Jean-michel; Costes, Louis; Geairon, Philippe; Grizon, James.
In France, today, more than 80% of farmed blue mussel seed collection is based on larvae fixation on collector ropes. Mussels are traditionally grown on bouchot, which are rows of wooden poles placed perpendicularly to the shore, stuck in the ground within the gently sloping intertidal strip. Mussels are transferred either as seed attached on collecting ropes or as juveniles placed in net sockings and then wound up around the poles or suspended to longlines, where they will fatten and grow (Garen et al., 2004). In order to optimize seed collection and to limit unwanted biofouling on ropes, mussel growers local organizations identify best timing of seed collector ropes deployment by monitoring the number and size of planktonic mussel larvae from water...
Tipo: Text
Ano: 2018
URL: http://archimer.ifremer.fr/doc/00455/56620/58332.pdf

Antiviral immunity in the Pacific oyster, Crassostrea gigas: last development and perspective
Provedor de dados: 5
Autores: Renault, Tristan; Faury, Nicole; Barbosa, Valerie; Moreau, Kevin; Haffner, Philippe; Pepin, Jean-francois.
Herpes-like viruses have been reported last decades in various marine mollusc species in association with mortality outbreaks throughout the world (Renault &amp; Novoa 2004). One of these viruses isolated during French outbreaks has been characterised as an unassigned member of the Herpesviridae family and named ostreid herpes virus 1 (OsHV-1) or Pacific oyster herpes virus (Davison et al. 2005). Studying anti-viral non-specific defence mechanisms (innate immunity) is of great interest, because they constitute the only one in molluscs. Therefore, innate immunity has be investigated in the Pacific cupped oyster, Crassostrea gigas. The main aim of the work was focused on the identification and the characterisation of genes induced by OsHV-1 in the Pacific...
Tipo: Text
Palavras-chave: Pathoogy; Protein gene; Immunity; Herpesviridae; OsHV 1; Crassostrea gigas; Pacific oyster.
Ano: 2008
URL: http://archimer.ifremer.fr/doc/2008/acte-4035.pdf

Qualité microbiologique des zones conchylicoles dans les Pertuis Charentais
Provedor de dados: 5
Autores: Thomas, Gerard; Piquet, Jean-come; Ryckaert, Mireille; Masson, Daniel; Pepin, Jean-francois; Polsenaere, Pierre; Fillon, Alain.
Marine environment contamination can affect fishing and shellfish farming products (and shellfish in the first place), thus making them improper for human consumption, threatening public health and producer’s business. Analysis and health risk management are mandatory for consumer’s security and shellfish production survival.  About microbial risk, monitoring shellfish production areas and several studies carried by LERPC laboratory give a good view of the microbial contamination impacting the Pertuis Charentais shellfish production area. On the other hand, State-Region Plan Contract (CPER) studies results from 2007 to 2013 are presented and discussed; additionally, the law-prescribed sanitary studies for professional on foot-fishing classification are...
Tipo: Text
Palavras-chave: Microbiologie; E. coli; Norovirus; Étude sanitaire; Conchyliculture; Pêche à pied professionnelle; Pertuis Charentais; Microbiology; E.coli; Norovirus; Sanitary(health) studies; Shellfish farming; On foot]fishing; Pertuis Charentais.
Ano: 2015
URL: http://archimer.ifremer.fr/doc/00302/41299/40472.pdf

Recherche de moyens de dépistage et de prévention de la nodavirose du bar
Provedor de dados: 5
Autores: Coeurdacier, Jean-luc; Breuil, Gilles; Pepin, Jean-francois; Mouchel, Olivier; Fauvel, Christian; Laporte, Florent; Thiery, Richard; Castric, J; Raymond, Jean-christophe; Baudin Laurencin, Félix.
Ce rapport clôture une collaboration, entreprise courant 97, entre l’Agence Nationale pour la Valorisation de la Recherche (ANVAR), l’Agence Française de Sécurité Sanitaire des Aliments(AFSSA), le Syndicat National des Aquaculteurs Marins (SFAM) et l’Institut Français de Recherche pour l’Exploitation de la Mer (IFREMER). Deux lignées de nodavirus infectant le bar ont été mises en évidence avec une pathogénie variable selon l'âge et les facteurs extérieurs. Ce virus s’est montré d’une résistance exceptionnelle aux facteurs tant physiques que chimiques. Les diagnostics existants ont été adaptés ou réabordés sous un angle différent. Une étude épidémiologique a été réalisée chez les producteurs. La vaccination par peptides synthétiques a permis de sélectionner...
Tipo: Text
Ano: 2002
URL: http://archimer.ifremer.fr/doc/00167/27874/26120.pdf

Mortalités de moules bleues dans les secteurs mytilicoles : description et étude des facteurs liés, action – MORBLEU-2018
Provedor de dados: 5
Autores: Pepin, Jean-francois; Benabdelmouna, Abdellah; Bierne, Nicolas; Chasselin, Leo; Degremont, Lionel; Guesdon, Stephane; Lamy, Jean-baptiste; Le Moine, Olivier; Normand, Julien; Robert, Stephane; Soletchnik, Patrick.
Depuis 2014, des épisodes de mortalité anormale affectent les cheptels mytilicoles tant adultes que juvéniles. Dès l’année 2015, une étude spécifique cofinancée par la DPMA et réalisée par l’Ifremer a été initiée, l’action de recherche MORBLEU (Mortalité des moules Bleues). Les années 2015- 2017 ont permis de dégager des éléments de connaissance et des pistes relatifs aux facteurs biotiques et abiotiques qui semblent intervenir dans le phénomène de hausse de mortalité des moules depuis 2014. Pour l’année 2018, les actions d’observation et de suivis du milieu et des moules ont été fortement réduites et trois axes principaux ont été poursuivis : i) l’étude de la relation entre l’évolution des équilibres microbiens planctoniques et l’apparition de mortalités...
Tipo: Text
Ano: 2019
URL: https://archimer.ifremer.fr/doc/00588/70056/67999.pdf

Mortalités de moules bleues dans les secteurs mytilicoles charentais et vendéens : description et facteurs liés – MORBLEU
Provedor de dados: 5
Autores: Pepin, Jean-francois; Benabdelmouna, Abdellah; Degremont, Lionel; Guesdon, Stephane; Le Moine, Olivier; Morga, Benjamin; Bierne, Nicolas; Travers, Marie-agnes; Robert, Stephane; Soletchnik, Patrick.
Depuis 2014, des épisodes de mortalité anormale affectent les cheptels mytilicoles tant adultes que juvéniles. Dès l’année 2015, une première année d’étude a été réalisée au travers de l’action MORBLEU (Mortalité des moules Bleues). Elle a été menée dans les Pertuis charentais et la baie de Bourgneuf. Dans ce même contexte, elle a été reconduite en 2016 afin de poursuivre l’analyse des données collectées en 2015, renouveler une campagne d’étude et d’observation in situ, formuler des hypothèses autour de facteurs favorisants ces épisodes de mortalité de moules, développer des essais permettant de tester ces hypothèses dans le futur et produire des lots de moules pour ces essais et pour caractériser le potentiel adaptatif des animaux face aux épisodes de...
Tipo: Text
Palavras-chave: Moules; Mytilus edulis; Facteurs environnementaux; Mortalité; Equilibre microbien; Populations; Qualité cytogénétique; Anomalies hémocytaires; Expression de gènes; Physiologie.
Ano: 2017
URL: https://archimer.ifremer.fr/doc/00391/50288/50978.pdf

Première évaluation de la diversité des communautés microbiennes planctoniques au cours d'épisodes de mortalité des moules bleues en France : utilisation de l'approche de métabarcoding pour l'analyse de l'ADN environnemental
Provedor de dados: 5
Autores: Pepin, Jean-francois; Bouget, Jean-francois; Chabirand, Jean-michel; Chasselin, Leo; Costes, Louis; Grizon, James; Lejolivet, Aurore; Le Noc, Sandrine; Palvadeau, Hubert; Schmitt, Anne; Seugnet, Jean-luc; Soletchnik, Patrick; Travers, Marie-agnes; Tourbiez, Delphine; Guesdon, Stephane.
Since 2014 in France, in Charente maritime and Vendée, farmed and stocks of blue mussels experienced strong mortality events. In this context, the « MORBLEU » research project (DPMA-Ifremer agreement) was initiated to explore potentially aggravating factors, associated or correlated with mortality of mussels. Here, the work is to study biotic factors in mussels environment, looking for describe diversity and evolution of microbial communities (water column) before, during and after mortality events using NGS technology (metabarcoding) for environmental DNA analysis. We present, sampling strategy used from 2015 to 2018, Material &amp; Methods and some preliminary results.  
Tipo: Text
Palavras-chave: MORBLEU; Moules; Mortalité; ADN environnemental; EDNA; Metabarcoding; Communautés microbiennes.
Ano: 2019
URL: https://archimer.ifremer.fr/doc/00505/61664/65579.pdf

Mortalités massives de moules bleues dans les secteurs mytilicoles : description et facteurs liés
Provedor de dados: 5
Autores: Pepin, Jean-francois.
Depuis 2014, des épisodes de mortalité massive notamment en Charente-Maritime et en Vendée, ont été rapportés sur la « moule bleue » élevée principalement sur bouchots (pieux en chêne plantés verticalement) ou sur filières (cordes verticales sous flotteurs). Ces épisodes affectent significativement l’économie des entreprises mytilicoles. Plusieurs hypothèses ont été émises pour expliquer ce phénomène : agents pathogènes, contamination environnementale notamment par des pesticides, «asphyxie» des moules par excès de matière en suspension, réchauffement climatique, acidificationdes eaux, baisse des ressources alimentaires, ou stress physiologique. etc....
Tipo: Text
Ano: 2019
URL: https://archimer.ifremer.fr/doc/00503/61504/65336.pdf