Consulta: subjectFacets:"Bacterial communities"
Registros recuperados: 8
Data/hora: 06/06/2024 11:32:47

Short-scale temporal variability of physical, biological and biogeochemical processes in the NW Mediterranean Sea: an introduction
Provedor de dados: 5
Autores: Andersen, V.; Goutx, M.; Prieur, L.; Dolan, J. R.
In the framework of the PROOF-PECHE project (http://www.obs-vlfr.fr/proof/vt/op/ec/peche/pec.htm) a multi-disciplinary team performed experiments and collected samples during the DYNAPROC2 cruise aboard the RV Thalassa from September to October in 2004. The cruise provided data on the functioning of the pelagic food web by sampling over a month long period in the NW Mediterranean Sea at a fixed station subject to weak horizontal advection currents during a period of hydrological stability. This paper describes the background of the cruise and provides an overview of the results derived from the campaign which constitute the special section. The major objective of the cruise was to assess the relative importance and variability of the pathways of carbon in...
Tipo: Text
Palavras-chave: Spring bloom; Zooplankton community; Vertical distribution; Surface layer; Wind events; Bacterial communities; Food web; Transition; Oligotrophy; Abundance.
Ano: 2009
URL: https://archimer.ifremer.fr/doc/00092/20315/17954.pdf

Thermal regime and host clade, rather than geography, drive Symbiodinium and bacterial assemblages in the scleractinian coral Pocillopora damicornis sensu lato
Provedor de dados: 5
Autores: Brener-raffalli, Kelly; Clerissi, Camille; Vidal-dupiol, Jeremie; Adjeroud, Mehdi; Bonhomme, Francois; Pratlong, Marine; Aurelle, Didier; Mitta, Guillaume; Toulza, Eve.
Background: Although the term holobiont has been popularized in corals with the advent of the hologenome theory of evolution, the underlying concepts are still a matter of debate. Indeed, the relative contribution of host and environment and especially thermal regime in shaping the microbial communities should be examined carefully to evaluate the potential role of symbionts for holobiont adaptation in the context of global changes. We used the sessile, long-lived, symbiotic and environmentally sensitive reef-building coral Pocillopora damicornis to address these issues. Results: We sampled Pocillopora damicornis colonies corresponding to two different mitochondrial lineages in different geographic areas displaying different thermal regimes: Djibouti,...
Tipo: Text
Palavras-chave: Coral holobiont; Microbiota; Bacterial communities; Symbiodinium assemblages; Thermal adaptation; Scleractinian corals; Coral reefs; Pocillopora damicornis.
Ano: 2018
URL: https://archimer.ifremer.fr/doc/00429/54076/55380.pdf

Bacterial community characterization of water and intestine of the shrimp Litopenaeus stylirostris in a biofloc system
Provedor de dados: 5
Autores: Cardona, Emilie; Gueguen, Yannick; Magré, Kevin; Lorgeoux, Bénédicte; Piquemal, David; Pierrat, Fabien; Noguier, Florian; Saulnier, Denis.
Background  Biofloc technology (BFT), a rearing method with little or no water exchange, is gaining popularity in aquaculture. In the water column, such systems develop conglomerates of microbes, algae and protozoa, together with detritus and dead organic particles. The intensive microbial community presents in these systems can be used as a pond water quality treatment system, and the microbial protein can serve as a feed additive. The current problem with BFT is the difficulty of controlling its bacterial community composition for both optimal water quality and optimal shrimp health. The main objective of the present study was to investigate microbial diversity of samples obtained from different culture environments (Biofloc technology and clear...
Tipo: Text
Palavras-chave: Shrimp; Biofloc; Clear sea water; Bacterial communities; Culture environment; Microbiota.
Ano: 2016
URL: http://archimer.ifremer.fr/doc/00346/45694/45314.pdf

Bacterial community structure along the Adour estuary (French Atlantic coast): influence of salinity gradient versus metal contamination
Provedor de dados: 5
Autores: Goni-urriza, M. S.; Point, D.; Amouroux, D.; Guyoneaud, R.; Donard, O. F. X.; Caumette, P.; Duran, R.
Salinity, other physico-chemical parameters and anthropogenic pollution are the main factors affecting bacterial communities in estuaries. We estimated the impact of these parameters on the distribution of bacterial communities in the Adour estuary (France), a moderately Polluted water body characterized by short residence times of particles and water and absence of a maximum turbidity zone. Eight stations were established along the salinity gradient from freshwater to marine conditions. For the 3 typical estuarine stations (water mixing zone), samples were collected at both low and high tide and at different depths according to the position of the halocline. This sampling strategy generated 35 samples with different degrees of mixing between fresh water...
Tipo: Text
Palavras-chave: Bacterial communities; Salinity gradient; Heavy metals; Estuary; Halocline; T-RFLP.
Ano: 2007
URL: https://archimer.ifremer.fr/doc/00249/35983/34517.pdf

Patterns of bacteria-host associations suggest different ecological strategies between two reef building cold-water coral species
Provedor de dados: 5
Autores: Meistertzheim, Anne. -leila; Lartaud, Franck; Arnaud-haond, Sophie; Kalenitchenko, Dimitri; Bessalam, Manon; Le Bris, Nadine; Galand, Pierre E.
Cold-water corals (CWC) are main ecosystem engineers of the deep sea, and their reefs constitute hot-spots of biodiversity. However, their ecology remains poorly understood, particularly, the nature of the holobiont formed by corals with their associated bacterial communities. Here, we analysed Madrepora oculata and Lophelia pertusa samples, collected from one location in a Mediterranean canyon in two different seasons (autumn and spring), in order to test for species specificity and temporal stability of the host-bacteria associations. The 16S rRNA sequencing revealed host-specific patterns of bacterial communities associated with L. pertusa and M. oculata, both in terms of community composition and diversity. All analyzed M. oculata polyps exhibited...
Tipo: Text
Palavras-chave: Deep-Sea corals; Madrepora oculata; Lophelia pertusa; Bacterial communities; Bacterial ecology; Mediterranean Sea; Microbe-microbe and microbe-host interactions.
Ano: 2016
URL: https://archimer.ifremer.fr/doc/00332/44362/43965.pdf

Les microplastiques : une menace en rade de Brest ?
Provedor de dados: 5
Autores: Frere, Laura.
World production of plastics has increased steadily for the past decades leading to a major contamination of the worldwide aquatic ecosystems recently estimated at more than five trillion plastic pieces floating the surface of the oceans. Microplastics (plastic particles &lt; 5 mm) are introduced into aquatic environments directly as industrial raw material (plastic pellets, cosmetics, clothing) or indirectly via the fragmentation of larger plastics. This emerging contaminant represents an increasing ecological concern for science and society. The present study focused on the microplastic contamination of the Bay of Brest (Brittany, France), a macrotidal coastal ecosystem characterized by intense anthropogenic activity. The main objectives were: (1) to...
Tipo: Text
Palavras-chave: Microplastiques; Micro-spectroscopie Raman; Matrices environnementales; Rade de Brest; Polluant organique; Communautés bactériennes; Microplastics; Micro-spectroscopy Raman; Environmental matrices; Bay of Brest; Organic pollutant; Bacterial communities.
Ano: 2017
URL: https://archimer.ifremer.fr/doc/00497/60913/64266.pdf

Linking Spatial and Temporal Dynamic of Bacterioplankton Communities With Ecological Strategies Across a Coastal Frontal Area
Provedor de dados: 5
Autores: Lemonnier, Clarisse; Perennou, Morgan; Eveillard, Damien; Fernandez-guerra, Antonio; Leynaert, Aude; Marié, Louis; Morrison, Hilary G.; Memery, Laurent; Paillard, Christine; Maignien, Lois.
Ocean frontal systems are widespread hydrological features defining the transition zone between distinct water masses. They are generally of high biological importance as they are often associated with locally enhanced primary production by phytoplankton. However, the composition of bacterial communities in the frontal zone remains poorly understood. In this study, we investigate how a coastal tidal front in Brittany (France) structures the free-living bacterioplankton communities in a spatio-temporal survey across four cruises, five stations and three depths. We used 16S rRNA gene surveys to compare bacterial community structures across 134 seawater samples and defined groups of co-varying taxa (modules) exhibiting coherent ecological patterns across...
Tipo: Text
Palavras-chave: Marine front; Bacterial communities; Dynamic; Network; Ecological strategies.
Ano: 2020
URL: https://archimer.ifremer.fr/doc/00634/74657/74557.pdf

Bioavailability of pollutants in bacterial communities of Rodrigo de Freitas Lagoon, Rio de Janeiro, Brazil
Provedor de dados: 58
Autores: Fonseca,E.M. da; Baptista Neto,J.A.; McAlister,J.J.; Smith,B.J.; Crapez,M.A.C.
Processes involving heavy metals and other contaminants continue to present unsolved environmental questions. To advance the understanding of geochemical processes that involve the bioavailability of contaminants, cores where collected in the Rodrigo de Freitas lagoon, and analyzed for bacterial activity and metal concentrations. Results would suggest an extremely reducing environment where organic substances seem to be the predominant agents responsible for this geochemical process. Analytical data showed sulphate reduction to be the main agent driving this process, since this kind of bacteria was found to be active in all of the samples analyzed. Esterase enzyme production did not signal the influence of heavy metals and hydrocarbon concentrations and...
Tipo: Info:eu-repo/semantics/article
Palavras-chave: Heavy metals fraccionament; Bacterial communities; Sediment cores.
Ano: 2014
URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1517-83822014000300027