Consulta: subjectFacets:"Rimicaris exoculata"
Registros recuperados: 9
Data/hora: 07/06/2024 10:25:35

Approche métagénomique de la chimiosynthèse en système hydrothermal océanique profond : cas particulier des symbioses bactériennes associées à la crevette Rimicaris exoculata
Provedor de dados: 5
Autores: Jan, Cyrielle.
The hydrothermal shrimp Rimicaris exoculata is an endemic species of the Mid-Atlantic Ridge (MAR).This species lives in dense aggregates on the walls of active chimneys and dominates the megafauna of most of these sites. This shrimp has two distinct microbial communities whose roles remain almost unknown. One of these communities is associated with the cephalothorax and hypertrophied mouthparts.These are covered by a dense community of bacteria affiliated to chemoautotrophic epibionts associated with mineral deposits. To deepen our knowledge on the symbiotic community in the context of the thesis, a metagenomic approach was undertaken. This helped highlighting the microbial diversity present with a dominant phylum, the Proteobacteria. Two classes are...
Tipo: Text
Palavras-chave: Epibiontes; Métagénomique; Rimicaris exoculata; Symbiose; Zetaproteobacteria; Symbiosis; Epibionts; Metagenomic.
Ano: 2012
URL: https://archimer.ifremer.fr/doc/00498/60954/64357.pdf

Microbial diversity associated with the hydrothermal shrimp Rimicaris exoculata gut and occurrence of a resident microbial community
Provedor de dados: 5
Autores: Durand, Lucile; Zbinden, Magali; Cueff-gauchard, Valerie; Duperron, Sebastien; Roussel, Erwan; Shillito, Bruce; Cambon-bonavita, Marie-anne.
Rimicaris exoculata dominates the megafauna of several Mid-Atlantic Ridge hydrothermal sites. Its gut is full of sulphides and iron-oxide particles and harbours microbial communities. Although a trophic symbiosis has been suggested, their role remains unclear. In vivo starvation experiments in pressurized vessels were performed on shrimps from Rainbow and Trans-Atlantic Geotraverse sites in order to expel the transient gut contents. Microbial communities associated with the gut of starved and reference shrimps were compared using 16S rRNA gene libraries and microscopic observations (light, transmission and scanning electron microscopy and FISH analyses). We show that the gut microbiota of shrimps from both sites included mainly Deferribacteres, Mollicutes,...
Tipo: Text
Palavras-chave: Deferribacteres; Midgut epibiosis; Mollicutes; Proteobacteria; Rimicaris exoculata; Starvation experiment.
Ano: 2010
URL: http://archimer.ifremer.fr/doc/00000/11142/7919.pdf

Mode de reconnaissance hôte symbionte en milieux extrêmes : cas du modèle symbiotique Rimicaris exoculata
Provedor de dados: 5
Autores: Le Bloa, Simon.
Deprived of light, the deep-sea hydrothermal vents are extremes ecosystems sustained by micobial chemosynthesis. These environments are colonized by animal species living in close relationships with these chemoautotrophic micro-organisms, eating them or establishing long term interactions with them, may they be trophic or not only. The shrimp Rimicaris exoculata is an endemic hydrothermal species of the Mid-Atlantic Ridge (MAR) sites. This crustacean represents the predominant macrofauna of some sites of the MAR. It lives in symbiotic association with two distinct microbial communities qualified as ectosymbiosis. One is located in its gill chamber and one in its gut. First, this work focused on the study of bacterial communication (Quorum Sensing or QS)...
Tipo: Text
Palavras-chave: Écosystèmes hydrothermaux; Peptide antimicrobien; Marqueurs génétiques; Hydrothermal vent; Rimicaris exoculata; Symbiose; Quorum Sensing; Antimicrobial peptide; Genetic marker.
Ano: 2016
URL: https://archimer.ifremer.fr/doc/00498/60918/64279.pdf

Recent population expansion and connectivity in the hydrothermal shrimp Rimicaris exoculata along the Mid-Atlantic Ridge
Provedor de dados: 5
Autores: Teixeira, Sara; Cambon-bonavita, Marie-anne; Serrao, Ester A.; Desbruyeres, Daniel; Arnaud-haond, Sophie.
Aim Deep-sea hydrothermal vents are unstable habitats that are both spatially and temporally fragmented. In vent species, a 'short-term insurance' hypothesis would lead us to expect mostly self-recruitment, limiting the loss of larvae in the deep ocean or water column and increasing genetic differentiation over the time elapsed since colonization. Alternatively, a 'long-term insurance' hypothesis would support the prediction of selection for large-scale dispersal, to ensure long-term persistence in these ephemeral habitats. The main goal of this study was to infer the spatial and temporal distribution of genetic diversity of the shrimp Rimicaris exoculata, which forms high-density local populations on hydrothermal vents along the Mid-Atlantic ridge....
Tipo: Text
Palavras-chave: Bottleneck; Deep-sea biogeography; Dispersal; Genetic diversity; Hydrothermal vents; Marine biogeography; Mid-Atlantic Ridge; Rimicaris exoculata; Spatio-temporal distribution.
Ano: 2011
URL: http://archimer.ifremer.fr/doc/00033/14394/12350.pdf

Metal bioaccumulation and storage forms in the shrimp, Rimicaris exoculata, from the Rainbow hydrothermal field (Mid-Atlantic Ridge); preliminary approach to the fluid-organism relationship
Provedor de dados: 5
Autores: Geret, Florence; Riso, Ricardo; Sarradin, Pierre-marie; Caprais, Jean-claude; Cosson, Richard P.
At the Rainbow hydrothermal site the concentrations of metals in the fluid are the highest observed in the Mid-Atlantic Ridge hydrothermal areas, and the shrimps Rimicaris exoculata were observed forming dense swarms in small depressions on the chimney walls. In order to understand the fluid-organism relationship, we investigated the relative abundance of metals in the water surrounding R. exoculata and their bioaccumulation by the shrimps. This first approach stresses a net metal enrichment around R. exoculata. Precipitation, scavenging and oxidative redissolution processes in the mixing zone are controlling the concentrations of metals. Their bioaccumulation varies according to their bioavailability in the surrounding water. Metals are abundant as...
Tipo: Text
Palavras-chave: Hydrothermal fluid; Rimicaris exoculata; Metals; Bioaccumulation; Rainbow.
Ano: 2002
URL: http://archimer.ifremer.fr/doc/00186/29762/28204.pdf

Acquisition of epibiotic bacteria along the life cycle of the hydrothermal shrimp Rimicaris exoculata
Provedor de dados: 5
Autores: Guri, Mathieu; Durand, Lucile; Cueff-gauchard, Valerie; Zbinden, Magali; Crassous, Philippe; Shillito, Bruce; Cambon-bonavita, Marie-anne.
The caridean shrimp Rimicaris exoculata dominates the fauna at several Mid-Atlantic Ridge hydrothermal vent sites. This shrimp has an enlarged gill chamber, harboring a dense ectosymbiotic community of chemoautotrophic bacteria associated with mineral oxide deposits. Until now, their acquisition is not fully understood. At three hydrothermal vent sites, we analyzed the epibionts diversity at different moult stages and also in the first stages of the shrimp life (eggs, hatched eggs (with larvae) and juveniles). Hatched eggs associated with young larvae were collected for the first time directly from gravid females at the Logachev vent site during the Serpentine cruise. An approach using 16S rRNA clone libraries, scanning and transmission electron...
Tipo: Text
Palavras-chave: Symbiosis; Larvae; Methanotrophic symbiont; Rimicaris exoculata; Transmission pathways.
Ano: 2012
URL: http://archimer.ifremer.fr/doc/00072/18318/15997.pdf

"Candidatus Desulfobulbus rimicarensis," an Uncultivated Deltaproteobacterial Epibiont from the Deep-Sea Hydrothermal Vent Shrimp Rimicaris exoculata
Provedor de dados: 5
Autores: Jiang, Lijing; Liu, Xuewen; Dong, Chunming; Huang, Zhaobin; Cambon-bonavita, Marie-anne; Alain, Karine; Gu, Li; Wang, Shasha; Shao, Zongze.
The deep-sea hydrothermal vent shrimp Rimicaris exoculata largely depends on a dense epibiotic chemoautotrophic bacterial community within its enlarged cephalothoracic chamber. However, our understanding of shrimp-bacterium interactions is limited. In this report, we focused on the deltaproteobacterial epibiont of R. exoculata from the relatively unexplored South Mid-Atlantic Ridge. A nearly complete genome of a Deltaproteobacteria epibiont was binned from the assembled metagenome. Whole-genome phylogenetic analysis reveals that it is affiliated with the genus Desulfobulbus, representing a potential novel species for which the name "Candidatus Desulfobulbus rimicarensis" is proposed. Genomic and transcriptomic analyses reveal that this bacterium utilizes...
Tipo: Text
Palavras-chave: Deltaproteobacteria; Rimicaris exoculata; Wood-Ljungdahl pathway; Epibiont; Sulfur disproportionation.
Ano: 2020
URL: https://archimer.ifremer.fr/doc/00624/73600/76007.pdf

Rimicaris exoculata: biology and ecology of a shrimp from deep-sea hydrothermal vents associated with ectosymbiotic bacteria
Provedor de dados: 5
Autores: Zbinden, M; Cambon-bonavita, Marie-anne.
Rimicaris exoculata, the ‘blind shrimp,’ is the most abundant species living on active hydrothermal edifices at deep-sea vents of the Mid-Atlantic Ridge. Its unusually enlarged branchial chamber houses a dense ectosymbiotic community of chemoautotrophic bacteria. Long debated, shrimp nutrition has been proven to be a kind of osmotrophy, whereby small organic molecules produced by the symbionts pass through the integument of the shrimp directly into the circulatory system, rather than through the digestive system. The broad phylogenetic and metabolic diversity of this epibiotic community suggests a highly flexible and adjustable microbial consortium, adapted to the chemically contrasting environments inhabited by the shrimp. To cope with the highly...
Tipo: Text
Palavras-chave: Alvinocaridid shrimp; Chemoautotrophic symbiont; Deep-sea; Epibiosis; Holobiont; Hydrothermal vents; Mid-Atlantic Ridge; Rimicaris exoculata.
Ano: 2020
URL: https://archimer.ifremer.fr/doc/00655/76681/77812.pdf

Heat-shock response and temperature resistance in the deep-sea vent shrimp Rimicaris exoculata
Provedor de dados: 5
Autores: Ravaux, Juliette; Gaill, Françoise; Le Bris, Nadine; Sarradin, Pierre-marie; Jollivet, Didier; Shillito, Bruce.
The shrimp Rimicaris exoculata swarms around hydrothermal black smoker chimneys at most vent sites along the Mid-Atlantic Ridge. This species maintains close proximity to the hydrothermal fluid, where temperatures can reach 350degreesC and steep thermal and chemical gradients are expected. We performed in vivo experiments in pressurized aquaria to determine the upper thermal limit [critical thermal maximum (CTmax)] of R. exoculata and to investigate some characteristics of the shrimp stress response to heat exposure. These experiments showed that the shrimp does not tolerate sustained exposure to temperatures in the 33-37degreesC range (CTmax). A heat-inducible stress protein belonging to the hsp70 family was identified in R. exoculata, and its synthesis...
Tipo: Text
Palavras-chave: Heat shock; Shrimp; Rimicaris exoculata; Chaperone; IPOCAMP; Caridae; Crustacea; Thermal stress; Hydrothermal vent.
Ano: 2003
URL: http://archimer.ifremer.fr/doc/2003/publication-417.pdf