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Registros recuperados: 61
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A 37 years hindcast of a coupled physical-biogeochemical model and its use for fisheries oceanography in the Bay of Biscay ArchiMer
Huret, Martin; Petitgas, Pierre; Struski, Caroline; Leger, Fabien; Sourisseau, Marc; Lazure, Pascal.
Overexploitation and climate change are increasingly causing unanticipated changes in marine ecosystems, such as higher variability in fish recruitment and shifts in species distribution, pressing for developing fisheries oceanography. In the meantime, operational oceanography rapidly progresses and its products become easy to access to a large community, among them fisheries scientists. Multiyear oceanographic reanalyses (hindcasts) were identified has a priority product by the ICES WG on Operational Oceanographic Products for Fisheries and Environment (WGOOFE). We performed a 37 years hindcast (1972-2008) run with a coupled physical-biogeochemical model (ECO-MARS3D) over the Bay of Biscay, using realistic meteorological and run-off forcing. We first...
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Ano: 2010 URL: http://archimer.ifremer.fr/doc/00023/13432/10442.pdf
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A 38 years hindcast of a coupled physical-biogeochemical model and derived indices for fisheries oceanography ArchiMer
Huret, Martin; Petitgas, Pierre; Sourisseau, Marc; Struski, Caroline; Leger, Fabien; Lazure, Pascal.
Operational oceanography rapidly progresses and its products become easy to access to a large community, among them fisheries scientists. The products cover both near real-time environment information (on scales of days to weeks) but also retrospective analysis providing long time series of environment parameters. Here we describe a 38 years hindcast of a coupled physical-biogeochemical model of the Bay of Biscay as well as the indices and major information that were derived from it.
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Ano: 2010 URL: http://archimer.ifremer.fr/doc/00023/13454/10466.pdf
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A behavioural fish movement approach within an anchovy IBM model to study fish migration patterns in the Bay of Biscay ArchiMer
Politikos, Dimitrios; Huret, Martin; Petitgas, Pierre.
Modelling of fish movement behaviour within a heterogeneous marine environment is a challenging but also key issue for understanding the effect of environmental factors and climatic change on fish processes (growth, distribution, mortality, reproduction). Fish movement models have the capability to encompass the combined effect of environment and empirical knowledge of fish individuals as energy requirements, known preys and predators, swimming capacities into a unified framework. Following an Individual Based Model (IBM) approach, a fish movement model has been developed to simulate the active movement of adult anchovy in the Bay of Biscay (BoB) in response to the spatio-temporal variations of both biotic and abiotic factors, as well as its internal...
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Ano: 2013 URL: http://archimer.ifremer.fr/doc/00176/28709/27161.pdf
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A coupled movement and bioenergetics model to explore the spawning migration of anchovy in the Bay of Biscay ArchiMer
Politikos, Dimitrios; Huret, Martin; Petitgas, Pierre.
Adult anchovies in the Bay of Biscay perform north to south migration from late winter to early summer for spawning. However, what triggers and drives the geographic shift of the population remains unclear and poorly understood. An individual-based fish model has been implemented to explore the potential mechanisms that control anchovy's movement routes toward its spawning habitats. To achieve this goal, two fish movement behaviors – gradient detection through restricted area search and kinesis – simulated fish response to its dynamic environment. A bioenergetics model was used to represent individual growth and reproduction along the fish trajectory. The environmental forcing (food, temperature) of the model was provided by a coupled...
Tipo: Text Palavras-chave: Individual-based model; Behavioral movement; Dynamic Energy Budget; Anchovy; Bay of Biscay.
Ano: 2015 URL: http://archimer.ifremer.fr/doc/00273/38446/36868.pdf
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A multi-decadal hindcast of a physical–biogeochemical model and derived oceanographic indices in the Bay of Biscay ArchiMer
Huret, Martin; Sourisseau, Marc; Petitgas, Pierre; Struski, Caroline; Leger, Fabien; Lazure, Pascal.
Multiple year oceanographic simulations (hindcast) are identified as a priority oceanography product for fisheries and environment studies since they provide a unique continuous long-term dataset allowing integrated assessment of the ocean state and evolution. We performed a 37 year (1972–2008) hindcast run with a coupled physical–biogeochemical model in the Bay of Biscay. The coupled model and the hindcast configuration are described. A model skill assessment is performed with a large set of in-situ data. Average seasonal currents show major circulation patterns over the shelf. Among tracers, temperature and salinity have the best agreement, ahead of nitrates and silicates, chlorophyll, and finally phosphates and ammonium. For chlorophyll, improved...
Tipo: Text Palavras-chave: Physical-biogeochemical model; Hindcast; Skill assessment; Environmental indices; Seasonal pattern; Interannual variability; Fisheries oceanography; Bay of Biscay.
Ano: 2013 URL: http://archimer.ifremer.fr/doc/00114/22538/20237.pdf
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An individual Based Model of anchovy early life stages in the Bay of Biscay: validation of vertical distribution and growth ArchiMer
Huret, Martin; Petitgas, Pierre; Bourriau, Paul; Grellier, Patrick.
The objective of the study is a better understanding of recruitment variability in anchovy population. An Individual Based Model (IBM) is being developed for the full life cycle of anchovy. The early life stages are presented on this poster. The model is tested in a 1D-vertical framework for validation of the vertical distribution of modelled eggs and larvae against in-situ data. The dynamic Energy Budget (DEB) theory is the biological baseline for individual growth. We test its ability to simulate the observed growth curves between years with contrasted temperatures.
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Ano: 2011 URL: http://archimer.ifremer.fr/doc/00054/16508/14022.pdf
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Anchovy population expansion in the North Sea ArchiMer
Petitgas, Pierre; Alheit, Juergen; Peck, Myron A.; Raab, Kristina; Irigoien, Xabier; Huret, Martin; Van Der Kooij, Jeroen; Pohlmann, Thomas; Wagner, Carola; Zarraonaindia, Iratxe; Dickey-collas, Mark.
The abundance and spatial occupation of European anchovy Engraulis encrasicolus have increased in the North Sea since the mid-1990s. We use a cross-disciplinary approach combining genetics, transport modelling, survey time series analyses and physical oceanographic modelling to investigate 3 hypotheses on the reasons for this change. Evidence from connectivity studies suggests that the population of North Sea anchovy is separate from that in the Bay of Biscay. The recruitment pulses observed in survey data fit a life cycle which includes spawning in early summer and larval development in late summer. This also supports the concept of population expansion originating from local remnant population(s). In terms of growth physiology, suitable thermal windows...
Tipo: Text Palavras-chave: Climate variability; Small pelagic fish; Regime shift; Temperature; Anchovy; North Sea.
Ano: 2012 URL: http://archimer.ifremer.fr/doc/00060/17140/14638.pdf
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Apports des données de la 'couleur de l'eau' à la modélisation couplée physique-biogéochimie en milieu dynamique côtier : Application au Rio de la Plata et au Golfe de Gascogne ArchiMer
Huret, Martin.
Continental margins play a crucial role in biogeochemical fluxes between the continents and the open ocean. They are also highly sensitive to human perturbations. Primary production is highly dependent on the complex dynamics of these coastal zones, and on the river supply in nutrients, as well as in Suspended Particulate Matter (SPM) which limit light availability. The quantification of the production is a prerequisite in many applications, from the understanding of the role of the coastal ocean in climate change, to eutrophication and fisheries resources issues within the frame of the integrated management of the coastal zone. Coupled physical-biogeochemical models are useful in studying and monitoring primary production. Because of the numerous complex...
Tipo: Text Palavras-chave: Parameter estimation; Data assimilation; Suspended Particulate Matter (SPM); Chlorophyll a; Phytoplankton blooms; Physical biogeochemical coupled model; Ocean color; Satellite data; Coastal area; Bay of Biscay; Rio de la Plata; Estimation de paramètres; Assimilation de données; Matières En Suspension (MES); Chlorophylle a; Blooms phytoplanctoniques; Modèle couplé physique biogéochimie; Couleur de l'eau; Donnée satellitale; Milieu côtier; Golfe de Gascogne; Rio de la Plata.
Ano: 2005 URL: http://archimer.ifremer.fr/doc/2005/these-337.pdf
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Bioenergetic condition of anchovy and sardine in the Bay of Biscay and English Channel ArchiMer
Gatti, Paul; Cominassi, Louise; Duhamel, Erwan; Grellier, Patrick; Le Delliou, Herve; Le Mestre, Sophie; Petitgas, Pierre; Rabiller, Manuella; Spitz, Jerome; Huret, Martin.
There is a growing interest in monitoring body condition of marine organisms in the context of the ecosystem approach to fisheries and global change. Fish condition is under the influence of environmental variability on seasonal scale, but also on longer timescales. It represents a good indicator of habitat quality or individual fitness, and is also a relevant parameter to evaluate energy transfer through the trophic chain. However, the sources of variability in fish condition need to be accurately understood and the significance of existing indices has to be correctly assessed. Here, we measured the energy density, a precise and global indicator of fish bioenergetic condition, for anchovy (Engraulis encrasicolus) and sardine (Sardina pilchardus) in the...
Tipo: Text Palavras-chave: Energy density; Calorimetry; Small pelagic fish; Engraulis encrasicolus; Sardina pilchardus; Northeast Atlantic.
Ano: 2018 URL: https://archimer.ifremer.fr/doc/00416/52754/53615.pdf
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Biophysical modelling to investigate the effects of climate change on marine population dispersal and connectivity ArchiMer
Lett, Christophe; Ayata, Sakina-dorothee; Huret, Martin; Irisson, Jean-olivier.
Climate may act on the dispersal and connectivity of marine populations through changes in the oceanic circulation and temperature, and by modifying species' prey and predator distributions. As dispersal and connectivity remain difficult to assess in situ, a first step in studying the effects of climate change can be achieved using biophysical models. To date, only a few biophysical models have been used for this purpose. Here we review these studies and also include results from other recent modelling efforts. We show that increased sea temperature, a major change expected under climate warming, may impact dispersal and connectivity patterns via changes in reproductive phenology (e.g., shift in the spawning season), transport (e.g., reduced pelagic larval...
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Ano: 2010 URL: http://archimer.ifremer.fr/doc/00031/14176/11522.pdf
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Bulletin d'information PREVIMER - Informations et analyses des eaux côtières. Janvier Février 2010 - n°12 ArchiMer
Lazure, Pascal; Huret, Martin; Gohin, Francis; Menesguen, Alain; Lecornu, Fabrice; Le Traon, Pierre-yves; Thomin, Pascale; Jegou, P.; Baraer, F.; Corre, Gilles; Louazel, Stephanie; Equipe projet PREVIMER.
Sommaire * Météo et débits des fleuves.....2 * Caractéristiques des masses d’eau côtières..............5 * Production biologique............11 * Rappel des objectifs du bulletin PREVIMER..................13 * Les moyens d’observations et de prévisions de l’état des mers côtières...........................13 * Glossaire..................................15
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Ano: 2010 URL: http://archimer.ifremer.fr/doc/00242/35367/33866.pdf
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Bulletin d'information PREVIMER - Informations et analyses des eaux côtières. Mars Avril 2009- n°7 ArchiMer
Lazure, Pascal; Huret, Martin; Gohin, Francis; Sourisseau, Marc; Saulquin, Bertrand; Lecornu, Fabrice; De Roeck, Yann-herve; Legrand, Jacques; Thomin, Pascale; Aoustin, Yannick; Jegou, P.; Baraer, F.; Le Stum, M.; Louazel, Stephanie; Equipe projet PREVIMER.
Sommaire * Météo, états de mer et débits des fleuves.....................2 * Caractéristiques des masses d’eau côtières..............6 * Production biologique............11 * Les faits marquants................12 * Rappel des objectifs du bulletin PREVIMER..................13 * Les moyens d’observations et de prévisions de l’état des mers côtières...........................13 * Glossaire..................................15
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Ano: 2009 URL: http://archimer.ifremer.fr/doc/00242/35360/33860.pdf
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Coccolith-derived turbidity and hydrological conditions in May in the Bay of Biscay ArchiMer
Perrot, Laurie; Gohin, Francis; Ruiz-pino, Diana; Lampert, Luis; Huret, Martin; Dessier, Aurelie; Malestroit, Pascale; Dupuy, Christine; Bourriau, Paul.
Coccolithophore blooms occur regularly from April to June in the Bay of Biscay where they have been observed for many years from ocean-colour imagery thanks to the ability of their calcite plates to scatter light. They are easily depicted on interpolated images of non-algal Suspended Particulate Matter (SPM) derived from satellite reflectance data in May, at the time of the PELGAS (PELagique GAScogne) annual surveys. Over the springs 2012 to 2015, the PELGAS surveys provided in-situ data on the turbidity throughout the water column and on the hydrological environment prevailing during the blooms in the vicinity of the continental shelf break. The satellite-derived SPM in the area of coccolithophore blooms was closely related to measured turbidity in the...
Tipo: Text Palavras-chave: Bay of Biscay; Ocean colour; Suspended particulate matter; Turbidity; Coccoliths; Stratification.
Ano: 2018 URL: https://archimer.ifremer.fr/doc/00416/52790/53689.pdf
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Connectivity patterns of anchovy larvae in the Bay of Biscay from a coupled transport-bioenergetic model forced by size-structured zooplankton ArchiMer
Huret, Martin; Vandromme, Pieter; Petitgas, Pierre; Pecquerie, Laure.
Connectivity during early life stages of pelagic fish, defined here by survival probability between spawning and early juvenile habitats, depends on a combination of sufficient food availability and low predator encounter along drift trajectories. For anchovy in the Bay of Biscay, larval transport experiments throughout the spawning season suggest accumulation of early juveniles in the offshore area of the southern Bay, as well as retention over the mid-shelf at mid-latitude. However, late summer-early autumn surveys suggest presence of juveniles only in the former region. From this observation, we set up a bioenergetic individual based model to test for the effect of food availability on survival patterns. The model couples a Lagrangian transport module...
Tipo: Text Palavras-chave: Connectivity; Larval IBM; Bioenergetics; Zooplankton; Bay of Biscay; European anchovy.
Ano: 2012 URL: http://archimer.ifremer.fr/doc/00105/21655/19237.pdf
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Coupling hydrodynamic and individual-based models to simulate long-term larval supply to coastal nursery areas ArchiMer
Rochette, Sebastien; Huret, Martin; Rivot, Etienne; Le Pape, Olivier.
For many marine fish species, recruitment is strongly related to larval survival and dispersal to nursery areas. Simulating larval drift should help assessing the sensitivity of recruitment variability to early life history. An individual-based model (IBM) coupled to a hydrodynamic model was used to simulate common sole larval supply from spawning areas to coastal and estuarine nursery grounds at the population scale in the eastern Channel on a 14-yr time series, from 1991 to 2004. The IBM allowed each particle released to be transported by currents from the hydrodynamic model, to grow with temperature, to migrate vertically giving stage development, and possibly to die according to drift duration, representing the life history from spawning to...
Tipo: Text Palavras-chave: Eastern Channel; Hydrodynamic model; Individual-based model; Larval supply; Nursery grounds; Recruitment variability; Solea solea.
Ano: 2012 URL: http://archimer.ifremer.fr/doc/00085/19598/17236.pdf
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Coupling physical and biogeochemical processes in the Rio de la Plata plume ArchiMer
Huret, Martin; Dadou, Isabelle; Dumas, Franck; Lazure, Pascal; Garcon, Véronique.
A coupled three-dimensional physical-biogeochemical model was developed in order to simulate the ecological functioning of the Rio de la Plata estuary and plume. The biogeochemical model reproduces the nitrogen cycle between five compartments: dissolved inorganic nitrogen, phytoplankton, zooplankton, detritus and dissolved organic nitrogen. The coupling is tested in seasonal climatological configurations and for the particular year 1999. The circulation is forced with Parana and Uruguay rivers discharges, NCEP wind and tide. The biogeochemical model includes loads of inorganic and organic nitrogen from both rivers. The model reproduces the correct tidal amplitudes in the estuary, as well as the most outstanding features of the observed horizontal and...
Tipo: Text Palavras-chave: Rio de la Plata; SeaWiFS; Primary production; Chlorophyll; River plumes; Biogeochemical modelling; Physical.
Ano: 2005 URL: http://archimer.ifremer.fr/doc/2005/publication-334.pdf
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Data products for fish stocks and ecosystem assessment:the PELGAS survey example ArchiMer
Doray, Mathieu; Petitgas, Pierre; Romagnan, Jean-baptiste; Huret, Martin; Duhamel, Erwan; Dupuy, Christine; Spitz, Jérôme; Berger, Laurent; Dorémus, Ghislain; Bourriau, Paul; Grellier, Patrick; Massé, Jacques; Sanchez, Florence.
The initial objective of the PELGAS integrated survey was to assess the biomass of small pelagic fish in the Bay of Biscay in spring. Sampling has been extended to study the spatial structure and dynamics of the pelagic ecosystem in springtime. The PELGAS survey has produced since 2000 long-term time-series of spatially-explicit data and indices, describing the main pelagic ecosystem components: hydrology, phytoplankton, mesozooplankton, fish and megafauna. In addition to small pelagic fish biomass estimates used for fish stock assessment, the survey now delivers two types of ecosystem products: standard gridded maps of ecosystem parameters, and a time series dataset of indicators of the Bay of Biscay pelagic ecosystem state. The evolution of the PELGAS...
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Ano: 2018 URL: http://archimer.ifremer.fr/doc/00457/56844/58693.pdf
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Densité des oeufs d'anchois (Engraulis encrasicolus) et de sardines (Sardina pilchardus) dans le golfe de Gascogne ArchiMer
Couraudon-reale, Marine; Huret, Martin; Bourriau, Paul; Taraud, Laure; Petitgas, Pierre.
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Ano: 2010 URL: http://archimer.ifremer.fr/doc/00023/13375/10400.pdf
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Direct assessment of small pelagic fish by the PELGAS13 acoustic survey ArchiMer
Duhamel, Erwan; Doray, Mathieu; Huret, Martin; Doremus, Ghislain; Pengrech, Alexis.
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Ano: 2013 URL: http://archimer.ifremer.fr/doc/00157/26825/24937.pdf
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Direct assessment of small pelagic fish by the PELGAS14 acoustic survey ArchiMer
Duhamel, Erwan; Doray, Mathieu; Huret, Martin; Authier, Matthieu; Gestin, Thomas.
Acoustic surveys are carried out every year in the Bay of Biscay in spring onboard the French research vessel Thalassa. The objective of PELGAS surveys is to study the abundance and distribution of pelagic fish in the Bay of Biscay. The main target species are anchovy and sardine but they are considered in a multi-specific context and within an ecosystemic approach as they are located in the centre of pelagic ecosystem.
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Ano: 2014 URL: http://archimer.ifremer.fr/doc/00209/32018/30455.pdf
Registros recuperados: 61
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