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From taxonomic literature to cybertaxonomic content Naturalis
Miller, J.A.; Dikow, T.; Agosti, D.; Sautter, G.; Catapano, T.; Penev, L.; Zhang, Z.-Q.; Pentcheff, D.; Pyle, R.; Blum, S.; Parr, C.; Freeland, C.; Garnett, T.; Ford, L.S.; Muller, B.; Smith, L.; Strader, G.; Georgiev, T.; Bénichou, L..
Taxonomy is a fundamental science that provides the scaffolding for biology. But the true value of taxonomic data remains unrealized because basic biodiversity information remains fragmented and unevenly accessible. Taxonomy helps us recognize species and map their distributions by generating text descriptions, images, and records of when and where they have been observed. Current rates of species extinction, habitat loss, and climate change mean that taxonomy has never been more relevant. Biodiversity is one of the most information-rich fields of human knowledge, but advances in basic cybertaxonomic infrastructure have only recently provided the tools to organize biodiversity information in ways that respond to a wide range of user groups, including...
Tipo: Article / Letter to the editor Palavras-chave: Cybertaxonomy; Open access publishing; Semantic content; XML markup; 42.70; 54.84.
Ano: 2012 URL: http://www.repository.naturalis.nl/record/434476
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Publication and dissemination of datasets in taxonomy: ZooKeys working example Naturalis
Penev, L.; Erwin, T.; Miller, J.; Chavan, V.; Moritz, T.; Griswold, C..
A concept for data publication and semantic enhancements proposed by ZooKeys and applied in the milestone paper by Miller et al. (2009) is described. For the fi rst time in systematic zoology, a unique combination of data publication and semantic enhancements is applied within the mainstream process of journal publishing, to demonstrate how: (1) All primary biodiversity data underlying a taxonomic monograph are published as a dataset under a separate DOI within a paper; (2) The occurrence dataset is separately discoverable and accessible through GBIF data portal (data.gbif.org) simultaneously with the publication; (3) The occurrence dataset is published as a KML (Keyhole Markup Language) file under a distinct DOI to provide an interactive experience in...
Tipo: Article / Letter to the editor Palavras-chave: Data publication; Semantic enhancements; Taxonomy.
Ano: 2009 URL: http://www.repository.naturalis.nl/record/434478
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Semantic tagging of and semantic enhancements to systematics papers: ZooKeys working examples Naturalis
Penev, L.; Agosti, D.; Georgiev, T.; Catapano, T.; Miller, J.; Blagoderov, V.; Roberts, D.; Smith, V.S.; Brake, I.; Ryrcroft, S.; Scott, B.; Johnson, N.F.; Morris, R.A.; Sautter, G.; Chavan, V.; Robertson, T.; Remsen, D.; Stoev, P.; Parr, C.; Knapp, S.; Kress, W.J.; Thompson, F.C.; Erwin, T..
The concept of semantic tagging and its potential for semantic enhancements to taxonomic papers is outlined and illustrated by four exemplar papers published in the present issue of ZooKeys. The four papers were created in different ways: (i) written in Microsoft Word and submitted as non-tagged manuscript (doi: 10.3897/zookeys.50.504); (ii) generated from Scratchpads and submitted as XMLtagged manuscripts (doi: 10.3897/zookeys.50.505 and doi: 10.3897/zookeys.50.506); (iii) generated from an author’s database (doi: 10.3897/zookeys.50.485) and submitted as XML-tagged manuscript. XML tagging and semantic enhancements were implemented during the editorial process of ZooKeys using the Pensoft Mark Up Tool (PMT), specially designed for this purpose. The XML...
Tipo: Article / Letter to the editor Palavras-chave: Semantic tagging; Semantic enhancements; Systematics; Taxonomy.
Ano: 2010 URL: http://www.repository.naturalis.nl/record/434480
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ZooKeys, unlocking Earth's incredible biodiversity and building a sustainable bridge into the public domain: From "€œprint-based"€ to "web-based" taxonomy, systematics, and natural history Naturalis
Penev, L.; Erwin, T.; Thompson, F.C.; Sues, H.-D.; Engel, M.S.; Agosti, D.; Pyle, R.; Ivie, M.; Assmann, T.; Henry, T.; Miller, J.; Ananjeva, N.B.; Casale, A.; Lourenco, W.; Golovatch, S.; Fagerholm, H.-P.; Taiti, S.; Alonso-Zarazaga, M.; Nieukerken, E. van.
Publishing taxonomic and systematics studies in the digital era faces major challenges and requires new approaches, many of which are currently stimulating spirited discussions amongst taxonomists and systematists. New amendments to the International Code of Zoological Nomenclature are expected to regulate electronic publishing of new taxa and create a standard form for their registration (ZooBank). Responding to a perceived need, this editorial announces establishment of ZooKeys – a new online and print journal in zoological taxonomy and systematics, which aims to quickly respond and adapt to the newest developments in taxonomic publishing. Open Access is accepted as mandatory for ZooKeys. The rationale for and concept of ZooKeys is discussed in detail.
Tipo: Article / Letter to the editor Palavras-chave: Taxonomy; Systematics; Online publishing; ZooBank; Open access; 42.70; 54.84.
Ano: 2008 URL: http://www.repository.naturalis.nl/record/434734
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