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Construction of gene networks for growth traits and genetic profiling of Nelore beef cattle of Brazil Repositório Alice
MUDADU, M. de A.; PORTO-NETO, L.; REVERTER, A.; REGITANO, L. C. de A..
2014
Tipo: Resumo em anais de congresso (ALICE) Palavras-chave: Nelore; Genome Wide Association Studies; Gado Nelore; Nelore.
Ano: 2014 URL: http://www.alice.cnptia.embrapa.br/handle/doc/1039990
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Erratum to: 'Genomic structure and marker-derived gene networks for growth and meat quality traits of brazilian nelore beef cattle'. Repositório Alice
MUDADU, M. de A.; PORTO NETO, L. R.; MOKRY, F. B.; TIZIOTO, P. C.; OLIVEIRA, P. S. N. de; TULLIO, R. R.; NASSU, R. T.; NICIURA, S. C. M.; THOLON, P.; ALENCAR, M. M. de; HIGA, R. H.; ROSA, A. do N.; FEIJO, G. L. D.; FERRAZ, A. L. J.; SILVA, L. O. C. da; MEDEIROS, S. R. de; LANNA, D. P. D.; NASCIMENTO, M. L. do; CHAVES, A. S.; SOUZA, A. R. D. L.; PACKER, I. U.; TORRES JUNIOR, R. A. de A.; SIQUEIRA, F.; MOURAO, G. B.; COUTINHO, L. L.; REVERTER, A.; REGITANO, L. C. de A..
bitstream/item/156478/1/Genomic-structure-and-market-derived-gene-BMC-genomics.pdf
Tipo: Artigo em periódico indexado (ALICE) Palavras-chave: Erratum; Beef cattle; Meat quality.
Ano: 2016 URL: http://www.alice.cnptia.embrapa.br/alice/handle/doc/1065244
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Genomic structure and marker-derived gene networks for growth and meat quality traits of brazilian nelore beef cattle. Repositório Alice
MUDADU, M. de A.; PORTO NETO, L. R.; MOKRY, F. B.; TIZIOTO, P. C.; OLIVEIRA, P. S. N. de; TULLIO, R. R.; NASSU, R. T.; NICIURA, S. C. M.; THOLON, P.; ALENCAR, M. M. de; HIGA, R. H.; ROSA, A. do N.; FEIJO, G. L. D.; FERRAZ, A. L. J.; SILVA, L. O. C. da; MEDEIROS, S. R. de; LANNA, D. P. D.; NASCIMENTO, M. L. do; CHAVES, A. S.; SOUZA, A. R. D. L.; PACKER, I. U.; TORRES JUNIOR, R. A. de A.; SIQUEIRA, F.; MOURAO, G. B.; COUTINHO, L. L.; REVERTER, A.; REGITANO, L. C. de A..
Nelore is the major beef cattle breed in Brazil with more than 130 million heads. Genome-wide association studies (GWAS) are often used to associate markers and genomic regions to growth and meat quality traits that can be used to assist selection programs. An alternative methodology to traditional GWAS that involves the construction of gene network interactions, derived from results of several GWAS is the AWM (Association Weight Matrices)/PCIT (Partial Correlation and Information Theory). With the aim of evaluating the genetic architecture of Brazilian Nelore cattle, we used high-density SNP genotyping data (~770,000 SNP) from 780 Nelore animals comprising 34 half-sibling families derived from highly disseminated and unrelated sires from across Brazil....
Tipo: Artigo em periódico indexado (ALICE) Palavras-chave: AWM; PCIT; GWAS; Genotyping.
Ano: 2016 URL: http://www.alice.cnptia.embrapa.br/alice/handle/doc/1053714
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Genomic structure and marker-derived gene networks for growth and meat quality traits of Brazilian Nelore beef cattle. Repositório Alice
MUDADU, M. de A.; PORTO-NETO, L. R.; MOKRY, F. B.; TIZIOTO, P. C.; OLIVEIRA, P. S. N.; TULLIO, R. R.; NASSU, R. T.; NICIURA, S. C. M.; THOLON, P.; ALENCAR, M. M. de; HIGA, R. H.; ROSA, A. do N.; FEIJO, G. L. D.; FERRAZ, A. L. J.; SILVA, L. O. C. da; MEDEIROS, S. R. de; LANNA, D. P.; NASCIMENTO, M. L.; CHAVES, A. S.; SOUZA, A. R. D. L.; PACKER, I. U.; TORRES JUNIOR, R. A. de A.; SIQUEIRA, F.; MOURÃO, G. B.; COUTINHO, L. L.; REVERTER, A.; REGITANO, L. C. de A..
Nelore is the major beef cattle breed in Brazil with more than 130 million heads. Genome-wide association studies (GWAS) are often used to associate markers and genomic regions to growth and meat quality traits that can be used to assist selection programs. An alternative methodology to traditional GWAS that involves the construction of gene network interactions, derived from results of several GWAS is the AWM (Association Weight Matrices)/PCIT (Partial Correlation and Information Theory). With the aim of evaluating the genetic architecture of Brazilian Nelore cattle, we used high-density SNP genotyping data (~770,000 SNP) from 780 Nelore animals comprising 34 half-sibling families derived from highly disseminated and unrelated sires from across Brazil....
Tipo: Artigo em periódico indexado (ALICE) Palavras-chave: Genome-wide association studies; Association Weight Matrices; Partial Correlation and Information Theory; Gene; Genética; Gado Nelore; Gado de corte; Genótipo; Genotyping; Genotype; Nellore; Beef cattle; Genetic resources.
Ano: 2016 URL: http://www.alice.cnptia.embrapa.br/handle/doc/1059898
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Imprime registro no formato completo
Genomic structure and marker-derived gene networks for growth and meat quality traits of Brazilian Nelore beef cattle. Repositório Alice
MUDADU, M. de A.; PORTO-NETO, L. R.; MOKRY, F. B.; TIZIOTO, P. C.; OLIVEIRA, P. S. N.; TULLIO, R. R.; NASSU, R. T.; NICIURA, S. C. M.; THOLON, P.; ALENCAR, M. M. de; HIGA, R. H.; ROSA, A. do N.; FEIJO, G. L. D.; FERRAZ, A. L. J.; SILVA, L. O. C. da; MEDEIROS, S. R. de; LANNA, D. P.; NASCIMENTO, M. L.; CHAVES, A. S.; SOUZA, A. R. D. L.; PACKER, I. U.; TORRES JUNIOR, R. A. de A.; SIQUEIRA, F.; MOURÃO, G. B.; COUTINHO, L. L.; REVERTER, A.; REGITANO, L. C. de A..
Nelore is the major beef cattle breed in Brazil with more than 130 million heads. Genome-wide association studies (GWAS) are often used to associate markers and genomic regions to growth and meat quality traits that can be used to assist selection programs. An alternative methodology to traditional GWAS that involves the construction of gene network interactions, derived from results of several GWAS is the AWM (Association Weight Matrices)/PCIT (Partial Correlation and Information Theory). With the aim of evaluating the genetic architecture of Brazilian Nelore cattle, we used high-density SNP genotyping data (~770,000 SNP) from 780 Nelore animals comprising 34 half-sibling families derived from highly disseminated and unrelated sires from across Brazil....
Tipo: Artigo em periódico indexado (ALICE) Palavras-chave: Genome-wide association studies; Association Weight Matrices; Partial Correlation and Information Theory; Gene; Genética; Gado Nelore; Gado de corte; Genótipo; Genotyping; Genotype; Nellore; Beef cattle; Genetic resources.
Ano: 2016 URL: http://www.alice.cnptia.embrapa.br/handle/doc/1065945
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The Bos taurus-Bos indicus balance in fertility and milk related genes. Repositório Alice
KASARAPU, P.; PORTO NETO, L. R.; FORTES, M. R. S.; LEHNERT, S. A.; MUDADU, M. de A.; COUTINHO, L. L.; REGITANO, L. C. de A.; GEORGE, A.; REVERTER, A..
Numerical approaches to high-density single nucleotide polymorphism (SNP) data are often employed independently to address individual questions. We linked independent approaches in a bioinformatics pipeline for further insight. The pipeline driven by heterozygosity and Hardy-Weinberg equilibrium (HWE) analyses was applied to characterize Bos taurus and Bos indicus ancestry. We infer a gene co-heterozygosity network that regulates bovine fertility, from data on 18,363 cattle with genotypes for 729,068 SNP. Hierarchical clustering separated populations according to Bos taurus and Bos indicus ancestry. The weights of the first principal component were subjected to Normal mixture modelling allowing the estimation of a gene?s contribution to the Bos taurus-Bos...
Tipo: Artigo em periódico indexado (ALICE) Palavras-chave: Hardy-Weinberg equilibrium; Bos Indicus; Bos Taurus.
Ano: 2017 URL: http://www.alice.cnptia.embrapa.br/alice/handle/doc/1074938
Imagem não selecionada

Imprime registro no formato completo
The Bos taurus-Bos indicus balance in fertility and milk related genes. Repositório Alice
KASARAPU, P.; PORTO-NETO, L. R.; FORTES, M. R. S.; LEHNERT, S. A.; MUDADU, M. de A.; COUTINHO, L.; REGITANO, L. C. de A.; GEORGE, A.; REVERTER, A..
Numerical approaches to high-density single nucleotide polymorphism (SNP) data are often employed independently to address individual questions. We linked independent approaches in a bioinformatics pipeline for further insight. The pipeline driven by heterozygosity and Hardy-Weinberg equilibrium (HWE) analyses was applied to characterize Bos taurus and Bos indicus ancestry. We infer a gene co-heterozygosity network that regulates bovine fertility, from data on 18,363 cattle with genotypes for 729,068 SNP. Hierarchical clustering separated populations according to Bos taurus and Bos indicus ancestry. The weights of the first principal component were subjected to Normal mixture modelling allowing the estimation of a gene's contribution to the Bos taurus-Bos...
Tipo: Artigo em periódico indexado (ALICE) Palavras-chave: Bioinformática; Polimorfismo de nucleotídeo único; Hardy-Weinberg equilibrium; Bos taurus; Bos indicus; Bioinformatics; Single nucleotide polymorphism.
Ano: 2017 URL: http://www.alice.cnptia.embrapa.br/alice/handle/doc/1086886
Registros recuperados: 7
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