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Evaluating methodologies for species delimitation: the mismatch between phenotypes and genotypes in lichenized fungi (Bryoria sect. Implexae, Parmeliaceae) Naturalis
Boluda, C.G.; Rico, V.J.; Divakar, P.K.; Nadyeina, O.; Myllys, L.; McMullin, R.T.; Zamora, J.C.; Scheidegger, C.; Hawksworth, D.L..
In many lichen-forming fungi, molecular phylogenetic analyses lead to the discovery of cryptic species within traditional morphospecies. However, in some cases, molecular sequence data also questions the separation of phenotypically characterised species. Here we apply an integrative taxonomy approach ‒ including morphological, chemical, molecular, and distributional characters ‒ to re-assess species boundaries in a traditionally speciose group of hair lichens, Bryoria sect. Implexae. We sampled multilocus sequence and microsatellite data from 142 specimens from a broad intercontinental distribution. Molecular data included DNA sequences of the standard fungal markers ITS, IGS, GAPDH, two newly tested loci (FRBi15 and FRBi16), and SSR frequencies from 18...
Tipo: Article / Letter to the editor Palavras-chave: Chemotypes; Cryptic species; Haplotypes; Incomplete lineage sorting; Integrative taxonomy; Microsatellites; Speciation; Species concepts.
Ano: 2019 URL: http://www.repository.naturalis.nl/record/660277
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Fungal Planet description sheets: 371–399 Naturalis
Crous, P.W.; Wingfield, M.J.; Le Roux, J.J.; Richardson, D.M.; Strasberg, D.; Shivas, R.G.; Alvarado, P.; Edwards, J.; Moreno, G.; Sharma, R.; Sonawane, M.S.; Tan, Y.P.; Altés, A.; Barasubiye, T.; Barnes, C.W.; Blanchette, R.A.; Boertmann, D.; Bogo, A.; Carlavilla, J.R.; Cheewangkoon, R.; Daniel, R.; Beer, Z.W. de; Jesús Yáñez-Morales, M. de; Doung, T.A.; Fernández-Vicente, J.; Geering, A.D.W.; Guest, D.I.; Held, B.W.; Keykoop, M.; Hubka, V.; Ismail, A.M.; Kajale, S.C.; Khemmuk, W.; Kolařík, M.; Kurli, R.; Lebeuf, R.; Lévesque, C.A.; Lombard, L.; Magista, D.; Manjón, J.L.; Marincowitz, S.; Mohedano, J.M.; Nováková, A.; Oberlies, N.H.; Otto, E.C.; Paguigan, N.D.; Pascoe, I.G.; Pérez-Butrón, J.L.; Perrone, G.; Rahi, P.; Raja, H.A.; Rintoul, T.; Sanhueza, R.M.V.; Scarlett, K.; Shouche, Y.S.; Shuttleworth, L.A.; Taylor, P.W.J.; Thorn, R.G.; Vawdrey, L.L.; Solano-Vidal, R.; Voitk, A.; Wong, P.T.W.; Wood, A.R.; Zamora, J.C.; Groenewald, J.Z..
Novel species of fungi described in the present study include the following from Australia: Neoseptorioides eucalypti gen. & sp. nov. from Eucalyptus radiata leaves, Phytophthora gondwanensis from soil, Diaporthe tulliensis from rotted stem ends of Theobroma cacao fruit, Diaporthe vawdreyi from fruit rot of Psidium guajava, Magnaporthiopsis agrostidis from rotted roots of Agrostis stolonifera and Semifissispora natalis from Eucalyptus leaf litter. Furthermore, Neopestalotiopsis egyptiaca is described from Mangifera indica leaves (Egypt), Roussoella mexicana from Coffea arabica leaves (Mexico), Calonectria monticola from soil (Thailand), Hygrocybe jackmanii from littoral sand dunes (Canada), Lindgomyces madisonensis from submerged decorticated wood...
Tipo: Article / Letter to the editor Palavras-chave: ITS DNA barcodes; LSU; Novel fungal species; Systematics.
Ano: 2015 URL: http://www.repository.naturalis.nl/record/588712
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Fungal Planet description sheets: 469–557 Naturalis
Crous, P.W.; Wingfield, M.J.; Burgess, T.I.; Hardy, G.E.St.J.; Crane, C.; Barrett, S.; Cano-Lira, J.F.; Roux, J.J. Le; Thangavel, R.; Guarro, J.; Siqueira, C.M. , J.P.Z.; Souza-Motta, C.M.; Stephenson, S.L.; Sutton, D.A.; Tamakeaw, N.; Telleria, M.T.; Valenzuela-Lopez, N.; Viljoen, A.; Visagie, C.M.; Vizzini, A.; Stchigel, A.M.; Wartchow, B.D. , F.; Wingfield, B.D.; Yurchenko, E.; Zamora, J.C.; Groenewald, J.Z.; Martín, M.P.; Alfredo, D.S.; Barber, P.A.; Barreto, R.W.; Baseia, I.G.; Cano-Canals, J.; Cheewangkoon, R.; Ferreira, R.J.; Gené, J.; Lechat, C.; Moreno, G.; Roets, F.; Shivas, R.G.; Sousa, J.O.; Tan, Y.P.; Wiederhold, N.P.; Abell, S.E.; Accioly, T.; Albizu, J.L.; Alves, J.L.; Antoniolli, Z.I.; Aplin, N.; Araújo, J.; Arzanlou, M.; Bezerra, J.D.P.; Bouchara, J.-P.; Carlavilla, J.R.; Castillo, A.; Castroagudín, V.L.; Ceresini, P.C.; Claridge, G.F.; Coelho, G.; Ceresini, P.C.; Claridge, G.F.; Coelho, G.; Coimbra, V.R.M.; Costa, L.A.; Cunha, K.C. da; Silva, S.S. da; Daniel, R.; Beer, Z.W. de; Dueñas, M.; Edwards, J.; Enwistle, P.; Fiuza, P.O.; Fournier, J.; García, D.; Gibertoni, T.B.; Giraud, S.; Guevara-Suarez, M.; Gusmão, L.F.P.; Haituk, S.; Heykoop, M.; Hirooka, Y.; T.A. Hofmann, J. Houbraken, D.P. Hughes, I. Kautmanová, O. Koppel, O. Koukol,, T.A.; T.A. Hofmann, J. Houbraken, D.P. Hughes, I. Kautmanová, O. Koppel, O. Koukol,, J.; Hughes, D.P.; Kautmanová, I.; Koppel, O.; Koukol, O.; Larsson, E.; Latha, K.P.D.; Lee, D.H.; Lisboa, Á. López-Villalba,, D.O.; Lisboa, W.S.; López-Villalba, Á.; Maciel , J.L.N.; Manimohan, P.; Manjón, J.L.; Marincowitz, S.; Marney, T.S.; Meijer, M.; Miller, A.N.; Olariaga, I.; Paiva, L.M.; Piepenbring, M.; Poveda-Molero, J.C.; Raj, K.N.A.; Raja, H.A.; Rougeron, A.; Salcedo, I.; Samadi,, R.; Santos, T.A.B.; Scarlett, K.; Seifert, K.A.; Shuttleworth, L.A.; Silva, G.A.; Silva, M..
Novel species of fungi described in this study include those from various countries as follows: Australia: Apiognomonia lasiopetali on Lasiopetalum sp., Blastacervulus eucalyptorum on Eucalyptus adesmophloia, Bullanockia australis (incl. Bullanockia gen. nov.) on Kingia australis, Caliciopsis eucalypti on Eucalyptus marginata, Celerioriella petrophiles on Petrophile teretifolia, Coleophoma xanthosiae on Xanthosia rotundifolia, Coniothyrium hakeae on Hakea sp., Diatrypella banksiae on Banksia formosa, Disculoides corymbiae on Corymbia calophylla, Elsinoë eelemani on Melaleuca alternifolia, Elsinoë eucalyptigena on Eucalyptus kingsmillii, Elsinoë preissianae on Eucalyptus preissiana, Eucasphaeria rustici on Eucalyptus creta, Hyweljonesia queenslandica...
Tipo: Article / Letter to the editor Palavras-chave: ITS nrDNA barcodes; LSU; Novel fungal species; Systematics.
Ano: 2016 URL: http://www.repository.naturalis.nl/record/621630
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Integrative taxonomy reveals an unexpected diversity in Geastrum section Geastrum (Geastrales, Basidiomycota) Naturalis
Zamora, J.C.; Calonge, F.D.; Martín, M.P..
A revision of the classification of Geastrum sect. Geastrum is presented on the basis of an integrative taxonomic approach, which involves the study of morphological, molecular, ecological, and chorological data. Four DNA regions are analysed: the ITS and LSU nrDNA, rpb1, and atp6. Phylogenetic reconstructions include 95 ingroup samples and show five main clades, which are considered as five subsections, one of them proposed as new (G. subsect. Hungarica), and a total of 27 lineages recognizable at species level. Discriminant function analyses, ANOVAs and Tukey’s HSD tests on more than 500 basidiomata reveal the utility of several quantitative morphological characters for species delimitation. As a result of the combination of the different sources of...
Tipo: Article / Letter to the editor Palavras-chave: Chorology; Ecology; Geastraceae; Morphology; Phylogenetics; Species delimitation.
Ano: 2015 URL: http://www.repository.naturalis.nl/record/560059
Registros recuperados: 4
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