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A fast and practical method for initial diagnosis of Piscinoodinium pillulare outbreaks: piscinootest Ciência Rural
Gomes,Ana Lucia Silva; Costa,Jesaías Ismael da; Benetton,Maria Linda Flora de Novaes; Bernardino,Geraldo; Belem-Costa,Andrea.
ABSTRACT: The dinoflagellate Piscinoodinium pillulare is a parasite with low parasitic specificity and unspecific geographical distribution. This research reported a simple and practical method - the principle of spontaneous sedimentation - to identify the presence of P. pillulare during massive infestations which does not require using precision equipment. Agitation in water of the gill arches of infested fish will elicit, after a period of rest, recording the accumulation of trophonts in the bottom of flasks. The method was applied during outbreaks of P. pillulare in tambaqui, Colossoma macropomum and matrinxã, Brycon amazonicus, in fish farms of the Amazon region and proved to be effective.
Tipo: Info:eu-repo/semantics/article Palavras-chave: Fish parasite; Dinoflagellate; Piscinoodiniasis.
Ano: 2018 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S0103-84782018000700501
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A new potentially toxic Azadinium species (Dinophyceae) from the Mediterranean Sea, A. dexteroporum sp. nov. ArchiMer
Percopo, Isabella; Siano, Raffaele; Rossi, Rachele; Soprano, Vittorio; Sarno, Diana; Zingone, Adriana.
A new photosynthetic planktonic marine dinoflagellate, Azadinium dexteroporum sp. nov., is described from the Gulf of Naples (South Tyrrhenian Sea, Mediterranean Sea). The plate formula of the species, Po, cp, X, 4, 3a, 6, 6C, 5?S, 6'" and 2, is typical for this recently described genus. Azadinium dexteroporum is the smallest rep-resentative of the genus (8.5m average length, 6.2m average width) and shares the presence of a small antapical spine with the type species A.spinosum and with A.polongum. However, it differs from all other Azadinium species for the markedly asymmetrical Po plate and the position of the ventral pore, which is located at the right posterior end of the Po plate. Another peculiarity of A.dexteroporum is the pronounced concavity of...
Tipo: Text Palavras-chave: Azadinium; Azaspiracid; Dinoflagellate; LC; MS-TOF; LTER-MC; Mediterranean Sea; Phylogeny; Taxonomy.
Ano: 2013 URL: http://archimer.ifremer.fr/doc/00171/28199/27278.pdf
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Changes in the annual harmful algal blooms of Alexandrium minutum : effects of environmental conditions and drainage basin inputs in the Rance estuary (Brittany, France) ArchiMer
Le Bec, Claude; Legendre, Aurelie; Messiaen, Gregory.
Time series of physico-chemical data and concentrations (cell L-1) of the toxic dinoflagellate Alexandrium minutum collected in the Rance macrotidal estuary (Brittany, France) were analyzed to understand the physico-chemical processes of the estuary and their relation to changes in bloom development from 1996 to 2009. The construction of the tidal power plant in the north and the presence of a lock in the south have greatly altered hydrodynamics, blocking the zone of maximum turbidity upstream, in the narrowest part of the estuary. Alexandrium minutum occurs in the middle part of the estuary. Most physical and chemical parameters of the Rance estuary are similar to those observed elsewhere in Brittany with water temperatures between 15–18 °C, slightly...
Tipo: Text Palavras-chave: Harmful algae; Dinoflagellate; Nutrients; Eutrophication; Drainage basin; Land runoff.
Ano: 2016 URL: http://archimer.ifremer.fr/doc/00341/45257/44698.pdf
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Comparison of two total RNA extraction protocols using the marine gorgonian coral Pseudopterogorgia elisabethae and its symbiont Symbiodinium sp. Electron. J. Biotechnol.
Santiago-Vázquez,Lory Z.; Ranzer,Llanie K.; Kerr,Russell G..
Marine invertebrates such as soft corals are important sources of secondary metabolites with promising biomedical applications and commercial value. RNA isolation in conjunction with reverse-transcriptase polymerase chain reaction (RT-PCR) are valuable tools utilized to study the molecular elements involved in secondary metabolite production and functional genomics. Two total RNA extraction protocols were compared using fresh tissue and flash frozen preparations from the coral Pseudopterogorgia elisabethae and from its symbiont Symbiodinium sp. isolated using RNeasy minicolumns (<a href="http://www1.qiagen.com/SelectCountry.aspx">Qiagen®</a>) and Trizol reagent (<a href="http://www.invitrogen.com/">Invitrogen®</a>). In general,...
Tipo: Journal article Palavras-chave: Dinoflagellate; RNA isolation; RNeasy minicolumns; Trizol reagent.
Ano: 2006 URL: http://www.scielo.cl/scielo.php?script=sci_arttext&pid=S0717-34582006000500017
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Dinoflagellate fossils: Geological and biological applications ArchiMer
Penaud, Aurelie; Hardy, William; Lambert, Clement; Marret, Fabienne; Masure, Edwige; Seryais, Thomas; Siano, Raffaele; Wary, Melanie; Mertens, Kenneth.
Dinoflagellates are part of the marine plankton and about 200 species produce a cyst (dinocyst) during their life cycle, these organic-walled sexually-produced cysts being fossilizable in sediments for hundreds of millions of years. Over the past 40–50 years, dinocysts have led to major advances on Mesozoic-Cenozoic research, in terms of biostratigraphy and paleogeogeography. Dinocyst taxonomy has then been continuously revised, with the tabulation being the main morphological link between living dinoflagellates and fossilized cysts. Over the Quaternary, and based on the principle of uniformitarianism (i.e. species ecology did not change through time), relationships between modern assemblages and present-day environmental factors controlling their...
Tipo: Text Palavras-chave: Dinoflagellate; Cyst-motile stage relationship; Modern dinocyst distribution; Paleoecology; Biostratigraphy; Ancient DNA.
Ano: 2018 URL: https://archimer.ifremer.fr/doc/00463/57476/59749.pdf
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Écophysiologie des dinoflagellés du genre Azadinium, production toxinique et transfert trophique vers les mollusques bivalves ArchiMer
Jauffrais, Thierry.
This study has been conducted in order to develop the analysis of AZAs and to produce AZAs from A. spinosum culture. It also aimed at studying the effect of environmental and nutritional factors on growth and toxin production. The study also demonstrated a link between A. spinosum and the accumulation of AZAs in shellfish, followed by the clarification of the processes of accumulation, detoxification and biotransformation of AZAs into mussels. A quantitative analysis of AZAs in A. spinosum cultures was developed, and the formation and structure of the AZA methylated analogues was explained and minimised. This work also demonstrated the feasibility of a sustainable production of AZAs from A. spinosum culture and highlighted the main factors influencing...
Tipo: Text Palavras-chave: Azadinium spinosum; Mytilus edulis; Azaspiracides; Phycotoxines; Dinoflagellés; Écophysiologie; CL-SM/SM; Azadinium spinosum; Mytilus edulis; Azaspiracids; Phycotoxins; Dinoflagellate; Ecophysiology; LC-MS/MS.
Ano: 2012 URL: http://archimer.ifremer.fr/doc/00111/22217/19891.pdf
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Effect of Azadinium spinosum on the feeding behaviour and azaspiracid accumulation of Mytilus edulis ArchiMer
Jauffrais, Thierry; Contreras, Andrea; Herrenknecht, Christine; Truquet, Philippe; Sechet, Veronique; Tillmann, Urban; Hess, Philipp.
Azadinium spinosum, a small toxic dinoflagellate, was recently isolated and identified as a primary producer of azaspiracid toxins (AZAs). Previous experiments related to AZA accumulation in blue mussels upon direct feeding with A. spinosum revealed increased mussel mortality and had negative effects on the thickness of the digestive gland tubules. Therefore we conducted follow up experiments in order to study effects of A. spinosum on mussel feeding behaviour. Individual assessment of mussel feeding time activity (FTA), clearance rate (CR), filtration rate (TFR), absorption rate (AR), faeces and pseudofaeces production were carried out on mussel fed either toxic (A. spinosum) or non-toxic (Isochrisis aff. galbana (T-Iso)) diets. Furthermore, AZA...
Tipo: Text Palavras-chave: Bivalve molluscs; Mussel; Ecophysiology; AZA biotransformation; AZA accumulation; Trophic transfer; Dinoflagellate; Azaspiracid.
Ano: 2012 URL: http://archimer.ifremer.fr/doc/00090/20174/17832.pdf
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Effect of the PSP-causing dinoflagellate, Alexandrium sp. on the initial feeding response of Crassostrea gigas ArchiMer
Wildish, David; Lassus, Patrick; Martin, Jennifer; Saulnier, Alinne; Bardouil, Michele.
The effects of toxic and non-toxic strains of Alexandrium sp. on the initial feeding responses of the Pacific oyster Crassostrea gigas were determined by continuous monitoring of the clearance rate of individual oysters. This was determined fluorometrically by loss of fluorescence of live microalgae introduced as food. Feeding oysters with toxic or non-toxic A. tamarense and toxic A. fundyense resulted in stop/start clearance behaviour. In contrast, control oysters fed a reference microalga, Isochrysis sp., known to support their growth, did not exhibit this behavior. Pacific oysters acclimated to Isochrysis sp., fed mixtures of Alexandrium/Isochrysis, showed further evidence of stop/start clearance. Exposure for periods up to 48 hours with non-toxic A....
Tipo: Text Palavras-chave: Crassostrea gigas; Physiologie alimentaire; Microalgues toxiques; Dinoflagellés; Paralytic shellfish poisoning; Crassostrea gigas; Feeding physiology; Toxic microalgae; Dinoflagellate; Paralytic shellfish poisoning.
Ano: 1998 URL: https://archimer.ifremer.fr/doc/1998/publication-877.pdf
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Guide pratique à l'usage des analystes du Réseau National de Surveillance du phytoplancton ArchiMer
Nezan, Elisabeth; Piclet, Guy; Grossel, Hubert.
This work is based on optical microscopic photographs. It helps to the identification of the phytoplanktonic organisms from the french coastal zones and to the normalization of the results of microscopic analysis. 1)Dinophyceae and dinoflagellate 2)Bacillariophyceae or diatomophyceae,named diatoms 3)Others classes
Tipo: Text Palavras-chave: Dinoflagellate; Diatoms; France; Coastal zones; Identification; Phytoplankton.
Ano: 1997 URL: https://archimer.ifremer.fr/doc/00502/61382/65020.pdf
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Health impact of unicellular algae of the Ostreopsis genus blooms in the Mediterranean Sea: experience of the French Mediterranean coast surveillance network from 2006 to 2009 ArchiMer
Tichadou, Lucia; Glaizal, Mathieu; Armengaud, Alexis; Grossel, Hubert; Lemee, Rodolphe; Kantin, Roger; Lasalle, Jean-luc; Drouet, Geneveve; Rambaud, Loic; Malfait, Philippe; De Haro, Luc.
Objective. Ostreopsis ovata and Ostreopsis siamensis are tropical unicellular algae that have been found recently in the Mediterranean. Both of these dinoflagellates produce palytoxin (PTX)-like toxins that are powerful vasoconstrictors in mammals. Since 2003, Ostreopsis blooms in Italy and Spain have been accompanied by reports of respiratory problems and skin/mucosa irritation in persons in contact with toxic microalgal cells (epiphytes, plankton, or sea spray) or associated toxins. Methods. In France, a surveillance network has been set up to monitor water conditions and to protect swimmers from contamination due to Ostreopsis. Results. Between 2006 and 2009, a total of nine blooms were observed on the French Mediterranean coast including five that led...
Tipo: Text Palavras-chave: Dinoflagellate; Algal bloom; Ostreopsis; Mediterranean Sea; Palytoxin.
Ano: 2010 URL: http://archimer.ifremer.fr/doc/00016/12716/9694.pdf
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Immersed hollow fibres microfiltration (MF) for removing undesirable micro-algae and protecting semi-closed aquaculture basins ArchiMer
Castaing, Jean-baptiste; Masse, A.; Sechet, Veronique; Sabiri, N. -e.; Pontie, M.; Haure, Joel; Jaouen, P..
In this study, an original use of immersed microfiltration membranes (mean pore size equal to 0.2 mu m) is investigated for the total removal of toxic dinoflagellates from seawater. Using a membrane autopsy and fouling model approach and the use of fouling indexes (called Pore Blocking Index, Pore Constriction Index and Cake Filtration Index), three dinoflagellate suspensions (Heterocapsa triquetra, Alexandrium minutum and Prorocentrum lima) have been microfiltered in order to study the influence of micro-algal species and its concentrations (1,000 and 30,000 cells/mL) on filtration yield and membrane fouling mechanisms. Results showed that all micro-algae have been retained after 180 min of microfiltration. At 30,000 cells/mL, permeate fluxes declined...
Tipo: Text Palavras-chave: Red tide; Dinoflagellate; Microfiltration; Membrane fouling mechanisms; Semi-closed aquaculture basins.
Ano: 2011 URL: http://archimer.ifremer.fr/doc/00041/15246/14016.pdf
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Implication of the host TGF beta pathway in the onset of symbiosis between larvae of the coral Fungia scutaria and the dinoflagellate Symbiodinium sp (clade C1f) ArchiMer
Berthelier, Jeremy; Schnitzler, Christine E.; Wood-charlson, Elisha M.; Poole, Angela Z.; Weis, Virginia M.; Detournay, Olivier.
Dinoflagellate-cnidarian associations form both the trophic and structural foundation of coral-reef ecosystems. Previous studies have highlighted the role of host innate immunity in regulation of these partnerships. This study reveals the presence of a transforming growth factor beta (TGF beta) in the coral Fungia scutaria that clusters with TGF beta sensu stricto (ss) from other animals. In functional studies of F. scutaria larvae, we show that (1) TGF beta ss mRNA is expressed during early stages of development prior to the onset of symbiosis; (2) apparent interference of the TGF beta pathway impairs the onset of symbiosis; and (3) this effect is associated with an increase of cytotoxic nitric oxide secretion, an immune response. This work highlights the...
Tipo: Text Palavras-chave: Transforming growth factor beta; Cnidarian; Coral bleaching; Dinoflagellate; Symbiodinium; Symbiosis.
Ano: 2017 URL: https://archimer.ifremer.fr/doc/00412/52389/56297.pdf
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Invasion and establishment of Ceratium furcoides (Dinophyceae) in an urban lake in Porto Alegre, RS, Brazil Acta Botanica
Silva,Luiza Nicoleite da; Medeiros,Caroline Modena de; Cavalcante,Kaoli Pereira; Cardoso,Luciana de Souza.
ABSTRACT Ceratium furcoides has received attention due its invasive behavior in South America and consequent alterations in local phytoplankton communities. Pedalinhos Lake had been dominated by chlorophytes until 2015, when the first occurrence of this dinoflagellate was detected. In order to investigate the colonization process of this species, we monitored the meteorological variables and phytoplankton abundance of this urban lake on a weekly basis from September 2015 to September 2018. At the beginning of the invasion process (Year 1), a peak density of 10,170 ind.mL-1 was recorded, with a significant decrease to 23 ind.mL-1, indicating an initial, unstable process of adaptation, with notable oscillation and reduction of cyanobacterial blooms. At this...
Tipo: Info:eu-repo/semantics/article Palavras-chave: Dinoflagellate; Invasive species; Shallow lake; Subtropical; Southern Brazil.
Ano: 2019 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S0102-33062019000400654
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Modélisation des blooms de Gymnodinium mikimotoï le long de la façade atlantique française : répartition spatiale ArchiMer
Loyer, Sophie; Lazure, Pascal; Gentien, Patrick; Menesguen, Alain.
In order to study the occurrence of Gymnodinium mikimotoï bloom on the French Atlantic coast, a three-dimensional model of primary production was set up. The biological model was coupled to a hydrodynamic model previously developed at Ifremer, by the intermediary of transport, diffusion and heat fluxes. The cycles of three limiting elements for the phytoplankton growth were modelised: nitrogen, phosphorus and silicon. The second phase of the study aimed at reproducing the summer dinoflagellate blooms. In this new approach a model of the species Gymnodinium mikimotoï was coupled with the previous biomass model which provides the physical and chemical environments. The study focuses on the results obtained by this specific sub-model. The parametrisation was...
Tipo: Text Palavras-chave: Turbulence; Dinoflagellés; Gymnodinium mikimotoï; Modèle; Nutriments; Turbulence; Dinoflagellate; Gymnodinium mikimotoï; Model; Nutrients.
Ano: 2001 URL: https://archimer.ifremer.fr/doc/00479/59100/61738.pdf
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Monoclonal antibody against the surface of Alexandrium minutum used in a whole-cell ELISA ArchiMer
Gas, F; Pinto, L; Baus, B; Gaufres, L; Crassous, Marie-pierre; Compere, Chantal; Quemeneur, E.
Harmful algal blooms represent a major threat to marine production, and particularly to shellfish farming. Alexandrium minutum, which causes paralytic shellfish poisoning, is occurring with increasing frequency along European coasts. Current regulatory methods to analyze environmental samples are tedious and time consuming because they require taxonomists and involve animal experiments. New rapid detection methods, such as immunoassays, are needed to ensure a fast alert system and for field studies of algal ecodynamics. Rat monoclonal antibodies were raised and selected for their ability to specifically recognize a surface antigen for the A. minutum strain AM89BM from the Bay of Morlaix, France. A whole-cell ELISA was designed, leading to the selection of...
Tipo: Text Palavras-chave: Monoclonal antibody; Harmful algal bloom; Enzyme linked immunosorbent assay; Dinoflagellate.
Ano: 2009 URL: http://archimer.ifremer.fr/doc/2008/publication-4647.pdf
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Morphology, ultrastructure and molecular phylogeny of cyst-producing Caladoa arcachonensis gen. et sp. nov. (Peridiniales, Dinophyceae) from France and Indonesia ArchiMer
Luo, Zhaohe; Mertens, Kenneth; Nezan, Elisabeth; Gu, Li; Pospelova, Vera; Thoha, Hikmah; Gu, Haifeng.
The dinoflagellate order Peridiniales encompasses several well circumscribed families. However, the family level of some genera, such as Bysmatrum and Vulcanodinium, has remained elusive for many years. Four Peridinium-like strains were established from the Atlantic coast of France and North Sulawesi, Indonesia through cyst germination or isolation of single cells. The cyst-theca relationship was established on specimens from the French Atlantic. Their morphologies were examined using light, scanning and transmission electron microscopy. The cells were characterized by a much larger epitheca relative to the hypotheca, a large anterior sulcal (Sa) plate deeply intruding the epitheca and a small first anterior intercalary plate. The plate formula was...
Tipo: Text Palavras-chave: Bysmatrum; Cyst; Dinoflagellate; Eyespot; Peridiniales; Plate overlap.
Ano: 2019 URL: https://archimer.ifremer.fr/doc/00489/60112/63564.pdf
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Morphology, ultrastructure and molecular phylogeny of Wangodinium sinense gen. et sp. nov. (Gymnodiniales, Dinophyceae) and revisiting of Gymnodinium dorsalisulcum and Gymnodinium impudicum ArchiMer
Luo, Zhaohe; Hu, Zhangxi; Tang, Yingzhong; Mertens, Kenneth; Leaw, Chui Pin; Lim, Po Teen; Teng, Sing Tung; Wang, Lei; Gu, Haifeng.
The genus Gymnodinium includes many morphologically similar species, but molecular phylogenies show that it is polyphyletic. Eight strains of Gymnodinium impudicum, Gymnodinium dorsalisulcum and a novel Gymnodinium‐like species from Chinese and Malaysian waters and the Mediterranean Sea were established. All of these strains were examined with LM, SEM and TEM. SSU, LSU and internal transcribed spacers rDNA sequences were obtained. A new genus, Wangodinium, was erected to incorporate strains with a loop‐shaped apical structure complex (ASC) comprising two rows of amphiesmal vesicles, here referred to as a new type of ASC. The chloroplasts of Wangodinium sinense are enveloped by two membranes. Pigment analysis shows that peridinin is the main accessory...
Tipo: Text Palavras-chave: Apical structure complex; Cyst; Dinoflagellate; Lepidodinium; Nuclear chambers; Pigment; Pyrenoid; Ultrastructure.
Ano: 2018 URL: https://archimer.ifremer.fr/doc/00454/56610/58307.pdf
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PRIMER REGISTRO DEL GÉNERO HETERODINIUM (DINOPHYCEAE) EN AGUAS COSTERAS DEL CARIBE COLOMBIANO Boletín de Investigaciones
Ramos Ortega,Lina M.; Vidal V.,Luís A..
Three species of the genus Heterodinium Kofoid are reported for the first time in coastal waters of the Colombian Caribbean. The identified species are Heterodinium rigdenae Kofoid, 1906, Heterodinium agassizii Kofoid, 1907 and Heterodinium angulatum Kofoid y Michener, 1911. Information about distribution of these species in the Caribbean Sea and the Gulf of Mexico is given.
Tipo: Info:eu-repo/semantics/article Palavras-chave: Heterodinium; Dinoflagellate; Colombian Caribbean.
Ano: 2008 URL: http://www.scielo.org.co/scielo.php?script=sci_arttext&pid=S0122-97612008000100012
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Processes leading to the coexistence of a host and its parasitoid in homogeneous environments: The role of an infected dormant stage ArchiMer
Arancio, Marc; Sourisseau, Marc; Souissi, Sami.
Theoretical studies have usually been used to explain host–parasitoid persistence in conditions of spatial heterogeneity or in homogeneous environments with specific conditions. In shallow estuaries where spatial heterogeneity is prevented by tides and river input, a common host–parasitoid system (dinoflagellate-Amoebophrya spp.) is able to persist even in the absence of specific conditions described in the literature. Recent observations have revealed that the cyst stage (during which the dinoflagellate host can survive in difficult environmental conditions in a dormant stage) can be infected by the parasitoid. The encystment/excystment process is suspected to be the basis for the long-term persistence of the system. In this work, the coexistence of...
Tipo: Text Palavras-chave: Individual-based model; Dinoflagellate; Parasitoid; Amoebophrya; Host-parasite interactions; Sources of coexistence.
Ano: 2014 URL: http://archimer.ifremer.fr/doc/00180/29119/27692.pdf
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Production and Isolation of Azaspiracid-1 and -2 from Azadinium spinosum Culture in Pilot Scale Photobioreactors ArchiMer
Jauffrais, Thierry; Kilcoyne, Jane; Sechet, Veronique; Herrenknecht, Christine; Truquet, Philippe; Herve, Fabienne; Berard, Jean-baptiste; Nulty, Ciara; Taylor, Sarah; Tillmann, Urban; Miles, Christopher O.; Hess, Philipp.
Azaspiracid (AZA) poisoning has been reported following consumption of contaminated shellfish, and is of human health concern. Hence, it is important to have sustainable amounts of the causative toxins available for toxicological studies and for instrument calibration in monitoring programs, without having to rely on natural toxin events. Continuous pilot scale culturing was carried out to evaluate the feasibility of AZA production using Azadinium spinosum cultures. Algae were harvested using tangential flow filtration or continuous centrifugation. AZAs were extracted using solid phase extraction (SPE) procedures, and subsequently purified. When coupling two stirred photobioreactors in series, cell concentrations reached 190,000 and 210,000 cell·mL−1 at...
Tipo: Text Palavras-chave: Solid phase extraction; Photobioreactor; Chemostat; Dinoflagellate; Micro-algae; LC-MS/MS; Tangential flow filtration; Azaspiracid; HP-20.
Ano: 2012 URL: http://archimer.ifremer.fr/doc/00088/19875/17526.pdf
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