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Registros recuperados: 4
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A fast algorithm to "de novo" genome wide tandem repeats discovery. Repositório Alice
NARCISO, M.; YAMAGISHI, M..
Tandem Repeats (TR) are sequences where the same pattern repeats consecutively. They have been used as genomic markers (microsatellite and minisatéllite) since the begining of the genomic era. Recently, new studies have associated TR to important regulatory processes which substantialy increased the interest in TR. The exponential reduction cost of sequencing caused by the new technologies, resulted in the proliferation of genome projects, and particularly of novel model organisms. Very often, the first sequence analysis is the identification of genetic markers such as SNPs and TRs. As the former is a by product of the assembly phase, the real chalenge resides in the latter since the TRs identification must be done de novo. This scenario requires a faster...
Tipo: Resumo em anais de congresso (ALICE) Palavras-chave: Algoritmo; Marcadores genéticos; Polimorfismo de nucleotídeo único; Repetições em Tandem; Algorithms; Microsatellite repeats; Genetic markers; Tandem repeat sequences; Single nucleotide polymorphism.
Ano: 2011 URL: http://www.alice.cnptia.embrapa.br/handle/doc/909360
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A fast algorithm to "de novo" genome wide tandem repeats discovery. Repositório Alice
NARCISO, M.; YAMAGISHI, M..
Tandem Repeats (TR) are sequences where the same pattern repeats consecutively. They have been used as genomic markers (microsatellite and minisatéllite) since the begining of the genomic era. Recently, new studies have associated TR to important regulatory processes which substantialy increased the interest in TR. The exponential reduction cost of sequencing caused by the new technologies, resulted in the proliferation of genome projects, and particularly of novel model organisms. Very often, the first sequence analysis is the identification of genetic markers such as SNPs and TRs. As the former is a by product of the assembly phase, the real chalenge resides in the latter since the TRs identification must be done de novo. This scenario requires a faster...
Tipo: Resumo em anais de congresso (ALICE) Palavras-chave: Algoritmo; Marcadores genéticos; Polimorfismo de nucleotídeo único; Repetições em Tandem; Algorithms; Microsatellite repeats; Genetic markers; Tandem repeat sequences; Single nucleotide polymorphism.
Ano: 2011 URL: http://www.alice.cnptia.embrapa.br/handle/doc/908712
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ConvolutionTR: comprehensive study of SNPs within tandem repeats. Repositório Alice
NARCISO, M. G.; YAMAGISHI, M. E. B.; KUSER-FALCAO, P. R..
In this work, we report for the first time a comprehensive study of SNPs within tandem repeats of a model organism. Our results show that, due their widespread occurrence, SNPs within TR deserves attention; even though some of them may be explained by simple base-calling errors.
Tipo: Resumo em anais de congresso (ALICE) Palavras-chave: Bioinformática; Sequências de DNA; Algoritmo ConvolutionTR; Bioinformatics; Tandem repeat sequences; Nucleotide sequences; Algorithms.
Ano: 2012 URL: http://www.alice.cnptia.embrapa.br/handle/doc/935333
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ConvolutionTR: comprehensive study of SNPs within tandem repeats. Repositório Alice
NARCISO, M. G.; YAMAGISHI, M. E. B.; KUSER-FALCAO, P. R..
2012
Tipo: Resumo em anais de congresso (ALICE) Palavras-chave: Bioinformática; Sequências de DNA; Algoritmo ConvolutionTR; Bioinformatics; Tandem repeat sequences; Nucleotide sequences; Algorithms.
Ano: 2012 URL: http://www.alice.cnptia.embrapa.br/handle/doc/932803
Registros recuperados: 4
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