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Provedor de dados:  17
País:  United Kingdom
Título:  GUDMAP - An Online GenitoUrinary Resource
Autores:  Chris Armit
Simon Harding
Jamie A. Davies
Jane Armstrong
Jane Brennan
Sue Lloyd-MacGilp
Derek Houghton
Mehran Sharghi
Xingjun Pi
Y. Cheng
Bruce Aronow
Kevin Gaido
Sean Grimmond
Peter Koopman
Jim Lessard
Melissa Little
Andy McMahon
Cathy Mendelsohn
Steve Potter
Michelle Southard-Smith
Duncan Davidson
Data:  2009-05-29
Ano:  2009
Palavras-chave:  Developmental Biology
Genetics & Genomics
Bioinformatics
Resumo:  The GenitoUrinary Development Molecular Anatomy Project (GUDMAP) is a consortium of laboratories working to provide the scientific and medical community with gene expression data and tools to facilitate research (see "www.gudmap.org":http://www.gudmap.org). The data provided by GUDMAP includes large _in situ_ hybridization screens (wholemount and section) and expression microarray analysis of components of the developing mouse urogenital system (including laser-captured material and FACS-isolated cells from transgenic reporter mice). In addition, a high-resolution anatomy ontology has been developed by members of the GUDMAP consortium to describe the subcompartments of the developing murine genitourinary tract. 

The GUDMAP Database Development Team and Editorial Office - both based in Edinburgh - function to ensure submission, curation, storage and presentation of the data submitted by the GUDMAP consortium. Our collective aim is twofold: 1) to simplify the process of submission so that data is publically available as soon as it is produced; and 2) to organize this information in a database and ensure that the online interface is continuously available and easy to use. Thus far, we have developed a range of tools that help both the submitter and the end user. These include: an online annotation tool that simplifies _in situ_ data submission through an ontology-based graphical user interface; a database interface that allows users to browse and query expression data, and to filter data by organ system; a heat-map display of microarray data and analyses. Furthermore, the Edinburgh team has developed a GUDMAP Disease Database that queries associations between genes, genitourinary diseases, and renal/urinary and reproductive phenotypes. In collaboration with GUDMAP consortium members at the CCHMC (Cincinnati Children's Hospital Medical Center), the Disease Database is being extended to include mammalian phenotypes mapped to OMIM entries. 

By virtue of its impressive dataset and its ease of use we hope that the GUDMAP Website will continue to serve as a powerful resource for biologists, clinicians and bioinformaticians with an interest in the urogenital system.
Tipo:  Poster
Identificador:  http://precedings.nature.com/documents/3297/version/1

oai:nature.com:10.1038/npre.2009.3297.1

http://dx.doi.org/10.1038/npre.2009.3297.1
Fonte:  Nature Precedings
Direitos:  Creative Commons Attribution 3.0 License
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