| Registro completo |
| Provedor de dados: |
ArchiMer
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| País: |
France
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| Título: |
Complete genome sequence and whole-genome phylogeny of Kosmotoga pacifica type strain SLHLJ1T from an East Pacific hydrothermal sediment
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| Autores: |
Jiang, Lijing
L'Haridon, Stephane
Jebbar, Mohamed
Xu, Hongxiu
Alain, Karine
Shao, Zongze
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| Data: |
2017-01
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| Ano: |
2017
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| Palavras-chave: |
Marine
Hydrothermal vent
Thermotogales
Chemoorganoheterotroph
Thermophile
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| Resumo: |
Kosmotoga pacifica strain SLHLJ1T is a thermophilic chemoorganoheterotrophic bacterium isolated from a deep-sea hydrothermal sediment. It belongs to the physiologically homogeneous Thermotogaceae family. Here, we describe the phenotypic features of K. pacifica together with its genome sequence and annotation. The chromosome has 2,169,170 bp, organized in one contig. A total of 1897 candidate protein-encoding genes and 177 RNA genes were identified. The 16S rRNA gene sequence of this strain is distantly related to sequences of some relatives classified in the same genus (K. olearia 7.02% and K. shengliensis 7.83%), with dissimilarity percentages close to the threshold generally described for genus delineation. Nevertheless, the percentage of conserved proteins (POCP), which is much higher than 50% (around 70%), together with phenotypic features of the isolates, confirm the affiliation all Kosmotoga species described so far to the same genus.
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| Tipo: |
Text
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| Idioma: |
Inglês
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| Identificador: |
http://archimer.ifremer.fr/doc/00371/48191/48324.pdf
http://archimer.ifremer.fr/doc/00371/48191/48325.csv
http://archimer.ifremer.fr/doc/00371/48191/48326.pdf
http://archimer.ifremer.fr/doc/00371/48191/48327.pdf
http://archimer.ifremer.fr/doc/00371/48191/48328.pdf
DOI:10.1186/s40793-016-0214-2
http://archimer.ifremer.fr/doc/00371/48191/
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| Editor: |
Biomed Central Ltd
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| Relação: |
info:eu-repo/grantAgreement/EC/FP7/311975/EU//MACUMBA
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| Formato: |
application/pdf
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| Fonte: |
Standards In Genomic Sciences (1944-3277) (Biomed Central Ltd), 2017-01 , Vol. 12 , N. 3 , P. 1-9
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| Direitos: |
The Author(s). 2017
info:eu-repo/semantics/openAccess
restricted use
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