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Bioprospection of cellulolytic and lipolytic South Atlantic deep-sea bacteria Electron. J. Biotechnol.
Odisi,Estácio Jussie; Silvestrin,Marcela Bruschi; Takahashi,Rodrigo Yoji Uwamori; da Silva,Marcus Adonai Castro; Lima,André Oliveira de Souza.
Background: Cellulases and lipases have broad industrial application, which calls for an urgent exploration of microorganisms from extreme environments as valuable source of commercial enzyme. In this context, the present work describes the bioprospection and identification of deep-sea bacteria that produce cellulases and lipases, as well their optimal temperature of activity. Results: The first step of this study was the screening of cellulolytic and lipolytic deep-sea bacteria from sediment and water column, which was conducted with substrates linked with 4-Methylumbelliferyl. Among the 161 strains evaluated, 40 were cellulolytic, 23 were lipolytic and 5 exhibited both activities. Cellulolytic and lipolytic bacteria are more common in sediment than at...
Tipo: Journal article Palavras-chave: Bacteria; Cellulases; Deep-sea; Lipases.
Ano: 2012 URL: http://www.scielo.cl/scielo.php?script=sci_arttext&pid=S0717-34582012000500018
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Two deep-living rhodaliids (Cnidaria, Siphonophora) from the Mid-Atlantic Ridge ArchiMer
Mapstone, Gillian M.; Corbari, Laure; Menot, Lenaick.
Rhodaliids are a semi-benthic family of 14 physonect siphonophore species found in all oceans, except the Mediterranean and Arctic. They inhabit species-specific depth ranges in isolated locations and records are mostly sparse. Here, the first ever observations of rhodaliids from the Mid-Atlantic Ridge are given, from three images of two putative species. They come from depths of 3482 and 3667–3670 metres, on the Mid-Atlantic Ridge (MAR) at 23°N and 26°N, near two hydrothermal vents. Rhodaliids are very delicate animals and extremely hard to sample, particularly from such great depths, and the only comparable deep-living species so far described is the Galapagos Dandelion (Thermopalia taraxaca) from 2480–2938 metres on the Galapagos Rift and East Pacific...
Tipo: Text Palavras-chave: Deep-sea; Mid-Atlantic Ridge; Rhodaliid; Siphonophore.
Ano: 2017 URL: http://archimer.ifremer.fr/doc/00361/47207/51395.pdf
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The contrasted evolutionary fates of deep-sea chemosynthetic mussels (Bivalvia, Bathymodiolinae) ArchiMer
Thubaut, Justine; Puillandre, Nicolas; Faure, Baptiste; Cruaud, Corinne; Samadi, Sarah.
Bathymodiolinae are giant mussels that were discovered at hydrothermal vents and harboring chemosynthetic symbionts. Due to their close phylogenetic relationship with seep species and tiny mussels from organic substrates, it was hypothesized that they gradually evolved from shallow to deeper environments, and specialized in decaying organic remains, then in seeps, and finally colonized deep-sea vents. Here, we present a multigene phylogeny that reveals that most of the genera are polyphyletic and/or paraphyletic. The robustness of the phylogeny allows us to revise the genus-level classification. Organic remains are robustly supported as the ancestral habitat for Bathymodiolinae. However, rather than a single step toward colonization of vents and seeps,...
Tipo: Text Palavras-chave: Bathymodiolinae; Chemosynthetic ecosystem; Deep-sea; Evolution.
Ano: 2013 URL: https://archimer.ifremer.fr/doc/00218/32957/31622.pdf
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TEMPO: a new ecological module for studying deep-sea community dynamics at hydrothermal vents ArchiMer
Sarrazin, Jozee; Blandin, Jerome; Delauney, Laurent; Dentrecolas, Stephane; Dorval, Philippe; Dupont, Jacky; Legrand, Julien; Leroux, D.; Leon, Pierre; Leveque, Jean-jacques; Rodier, Philippe; Vuillemin, Renaud; Sarradin, Pierre-marie.
The major goal of this project, elaborated in the frame of the STREP Exocet/D European project, was to design a first autonomous long-term imaging module equipped with a deep-sea video camera, adequate lightning and sufficient energy storage while taking advantage of most recent progress in imaging and photonics. The new ecological module TEMPO was tested and deployed during the Momareto cruise held from August 6 to September 6, 2006 on the new French oceanographic vessel Pourquoi pas?, with the ROV Victor 6000. The scientific objectives of the Momareto cruise were to study the spatial and temporal dynamics of hydrothermal communities colonizing the MoMAR zone, located on the Azores Triple Junction.
Tipo: Text Palavras-chave: Community dynamics; Deep-sea; Imagery; Monitoring.
Ano: 2007 URL: http://archimer.ifremer.fr/doc/2007/publication-3597.pdf
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On Plesionika persica (Kemp, 1925) and P. reflexa Chace, 1985 (Crustacea: Decapoda: Pandalidae) from India ArchiMer
Chan, Tin-yam; Chakraborty, Rekha Devi; Purushothaman, P.; Kuberan, G.; Yang, Chien-hui.
The availability of Indian specimens of Plesionika persica (Kemp, 1925) and P. reflexa Chace, 1985 provided more information on the taxonomy around these two species. Moreover, it is the first record of P. persica to India. Although P. taiwanica Chan and Yu, 2000 is superficially rather similar to P. persica, there are many differences between them and probably it is inappropriate to establish a species group for these two species. It is likely that all previous records of P. ensis (A. Milne-Edwards, 1881) from India actually represent P. reflexa Chace, 1985. Nevertheless, the present Indian specimens of P. reflexa have more than 10% COI sequence divergence from the topotypic materials of both P. ensis and P. reflexa, and the epipods at the pereiopods III...
Tipo: Text Palavras-chave: Plesionika; Deep-sea; Shrimps; Taxonomy; India; First record.
Ano: 2018 URL: https://archimer.ifremer.fr/doc/00659/77089/78446.pdf
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Patchiness of deep-sea communities in Papua New Guinea and potential susceptibility to anthropogenic disturbances illustrated by seep organisms ArchiMer
Samadi, Sarah; Puillandre, Nicolas; Pante, Eric; Boisselier, Marie-catherine; Corbari, Laure; Chen, Wei-jen; Maestrati, Philippe; Mana, Ralph; Thubaut, Justine; Zuccon, Dario; Hourdez, Stephane.
The deep-sea part of the ‘Papua Niugini Biodiversity Expedition’ surveyed the deep-sea environments along the coasts of New Guinea Island in the Bismarck Sea, from the Vitiaz Strait to the border between Papua New Guinea (PNG) and Irian Jaya. This expedition was a follow-up of the BIOPAPUA cruise (2010) that gave some of the first insights into the diversity of the deep-sea fauna of the Bismarck and Solomon Seas for environments other than deep-sea hydrothermal vents. The main aims of the cruise were to survey the diversity of the fauna of (i) hard bottoms that are typically found on deep seamounts, (ii) Astrolabe Bay from 200 m to about 1000 m, (iii) the chemosynthetic environments of the deep sea, including cold-seep environments and plant debris....
Tipo: Text Palavras-chave: Bathymodiolinae; Cold-seep; Deep-sea; Siboglinidae.
Ano: 2015 URL: https://archimer.ifremer.fr/doc/00276/38703/37210.pdf
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Les apports organiques et leur transformation en milieu abyssal à l'interface eau-sédiment dans l'Océan Atlantique tropical ArchiMer
Khripounoff, Alexis; Rowe, Gilbert T.
Five particle traps were deployed at depths of 4 400 to 4 900 rn at two stations on the Demerara abyssal plain and one station on the Cape Verde abyssal plain (tropical Atlantic). At the same time, an intensive sampling of superficial sediments was carried out using a 0,25 m2 box corer. The total particle flux varied from 372 to 87,7 mg dry weightfm2/day. The average concentration of organic carbon was 40 mg/g of material collected. ln the surface sediment this was only 4 mg/g. A direct relationship existed between the intensity of the flux of organic matter and the richness of the organic matter of the deposited sediment. According to our calculations, more than 90% of the organic matter arriving at the bottom is consumed by the abyssal benthos and only...
Tipo: Text Palavras-chave: Milieu abyssal; Flux particulaire; Bilan d'énergie; Biochimie des particules et des sédiments; Atlantique tropical; Deep-sea; Particles flux; Tropical atlantic; Energy budget; Biochemitry of particles and sediments.
Ano: 1985 URL: http://archimer.ifremer.fr/doc/00112/22318/19991.pdf
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Spatio-temporal patterns of macrourid fish species in the northern Mediterranean Sea ArchiMer
García-ruiz, Cristina; Hidalgo, Manuel; Carpentieri, Paolo; Fernandez-arcaya, Ulla; Gaudio, Palma; González, Maria; Jadaud, Angelique; Mulas, Antonello; Peristeraki, Panagiota; Rueda, José Luis; Vitale, Sergio; D’onghia, Gianfranco.
The present study describes for the first time the spatial distribution of five macrourid species throughout the Mediterranean Sea and analyses depth, geographical and time-related trends regarding their abundance, biomass and mean fish weight. The data were collected as part of the MEDITS annual bottom trawl survey carried out by several European Mediterranean countries from 1994 to 2015, using the same standardized gear and sampling protocol. The most represented species in terms of abundance and biomass was Coelorinchus caelorhincus. The bathymetric trend was different for each species. The shallowest occurring species was C. caelorhincus, followed by Hymenocephalus italicus and Nezumia sclerorhynchus, while Nezumia aequalis and Trachyrincus scabrus...
Tipo: Text Palavras-chave: Macrourids; Mediterranean; Bathymetric distribution; Geographic distribution; Spatio-temporal trends; Deep-sea; Trawl survey.
Ano: 2019 URL: https://archimer.ifremer.fr/doc/00489/60057/63337.pdf
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Activity and composition of the benthic fauna in the Whittard Canyon and the adjacent continental slope (NE Atlantic) ArchiMer
Duineveld, Gérard; Lavaleye, Marc; Berghuis, Eilke; De Wilde, Peter.
We compared the sediment and its community on the Celtic continental slope (Goban Spur) with those in a branch of the nearby Whittard Canyon in search for evidence of canyon mediated transport of (labile) organic matter. We studied the megabenthos and macrobenthos biomass and taxonomic composition, measured in situ sediment community oxygen consumption and determined sediment concentrations of particulate organic carbon, phytopigments, and nucleic acids. While the sediment community and activity on the canyon fan was similar to that on the abyssal station near Goban Spur, the sediment within the canyon had relatively enhanced sediment community oxygen consumption rates and higher levels of phytopigments. particulate organic carbon and nucleic acids,...
Tipo: Text Palavras-chave: Zone abyssale; Canyon; Macrofaune; Métabolisme; Pigments végétaux; Deep-sea; Canyon; Macrofauna; Metabolism; Phytopigments.
Ano: 2001 URL: http://archimer.ifremer.fr/doc/00323/43370/42840.pdf
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Fish faunal and habitat analyses using trawls, camera sleds and submersibles in benthic deep-sea habitats off central California ArchiMer
Cailliet, Gm; Andrews, Ah; Wakefield, Ww; Moreno, G; Rhodes, Kl.
Beam trawl, camera sled and submersible data from 2 000-3 300 m off central California produced similar fish faunal composition, but different density estimates. All species caught in trawls were observed in camera-sled and submersible observations. However, some rare species that were observed were not caught in trawls. The fish fauna was dominated by the families Macrouridae, Zoarcidae, Moridae, and Rajidae. Fishes both trawled and observed were the macrourids Coryphaenoides armatus, C. filifer and C. leptolepis; the zoarcids Bothrocara spp., Pachycara lepinium and Lycenchelys spp.; the morid Antimora microlepis; the rajid Bathyraja trachura, the ophidiid Spectrunculus grandis, and the liparidid Careproctus ovigerum. One unidentified liparidid...
Tipo: Text Palavras-chave: Benthos; Poisson; Habitat; Chalutage; Submersible; Deep-sea; Fishes; Habitat; Sampling; Submersibles.
Ano: 1999 URL: http://archimer.ifremer.fr/doc/00325/43583/44022.pdf
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Measuring the biological impact of drilling waste on the deep seafloor: an experimental challenge ArchiMer
Lelchat, F.; Dussauze, M.; Lemaire, P; Theron, M.; Toffin, Laurent; Le Floch, Stephane.
The depletion of traditional oil fields is driving the oil & gas industry to explore new exploitation sites previously considered as unprofitable. Deep-sea oil fields represent one of these new areas of exploitation. Well drilling during exploration and production operations generate large quantities of drilling waste whose biological impact on the deep-sea floor remains largely unknown. Because of the harsh abiotic factors characterizing this environment, the evaluation of this impact remains challenging. High hydrostatic pressure is the prominent factor which will affect in-situ biological processes. This review will examine the feedback on the various strategies used to evaluate the biological impact of deep-sea drilling waste deposition as well as...
Tipo: Text Palavras-chave: Drill cutting; Drilling waste; Ecotoxicology; Bioassay; Hydrostatic pressure; Deep-sea; Environmental assessment.
Ano: 2020 URL: https://archimer.ifremer.fr/doc/00603/71561/69988.pdf
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Mechanisms of trophic partitioning within two fish communities associated with a tropical oceanic island ArchiMer
Trystram, Clément; Roos, David; Guyomard, David; Jaquemet, Sébastien.
Understanding drivers of trophic partitioning at the community level is an essential prerequisite to the establishment of ecosystem-based management of fisheries. In this study, we identify drivers of trophic partitioning within a community of epipelagic fish and a community of deep-water fishes off Reunion Island. Effects of intrinsic (species identity, etc.) and environmental variables (fishing zone, month) on stomach content composition and stable isotope ratios were tested using regression trees and linear models respectively. Our results demonstrated firstly an independence of both communities, with very few common prey although they occurred in similar localities, and secondly, very different patterns of resources partitioning among each community....
Tipo: Text Palavras-chave: Trophic partitioning; Deep-sea; Epipelagic; Predator; Stable isotopes; Stomach contents.
Ano: 2015 URL: http://archimer.ifremer.fr/doc/00353/46440/46184.pdf
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Deep-sea nematode assemblage has not recovered 26 years after experimental mining of polymetallic nodules (Clarion-Clipperton Fracture Zone, Tropical Eastern Pacific) ArchiMer
Miljutin, Dmitry M.; Miljutina, Maria A.; Arbizu, Pedro Martinez; Galeron, Joelle.
We investigated nematode assemblages inhabiting the 26-year-old track created by experimental deep-sea mining of polymetallic nodules, and two adjacent, undisturbed sites, one with nodules and one without nodules. The aim was to compare density, assemblage structure, and diversity indices in order to assess the process of recovery of the nematode assemblage inhabiting the disturbed site. This experimental dredging was conducted in 1978 by the Ocean Minerals Company (USA) in the area of a French mining claim in the Clarion-Clipperton Fracture Zone (Tropical Eastern Pacific) at a depth of about 5000 m. The nematode assemblage had not returned its initial state 26 years after the experimental dredging: the total nematode density and biomass within the...
Tipo: Text Palavras-chave: Body volume; Deep-sea; Density; Disturbance; Diversity; Dredging; Mining; Nematode; Nodule; Recolonization; Recovery.
Ano: 2011 URL: http://archimer.ifremer.fr/doc/00047/15867/13321.pdf
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Heureuse surprise ! Évidence photographique de la présence d’un cadavre d’animal nectonique de taille moyenne sur le plancher océanique ArchiMer
Soltwedel, T; Von Juterzenka, K; Premke, K; Klages, M.
Although the use of deep-sea imagery considerably increased during the last decades, reports on nekton falls to the deep seafloor are very scarce. Whereas there are a few reports describing the finding of whale carcasses in the deep north-eastern and south-eastern Pacific, descriptions of invertebrate or vertebrate food-falls at centimetre to metre scale are extremely rare. After 4 years of extensive work at a deep-sea long-term station in northern polar regions (AWI-"Hausgarten"), including large-scale visual observations with various camera systems covering some 10 000 m(2) of seafloor at water depths between 1250 and 5600 m, this paper describes the first observation of a fish carcass at about 1280 m water depth, west off Svalbard. The fish skeleton had...
Tipo: Text Palavras-chave: Chute; Carcasses; Océan profond; Imagerie; Nécrophage; Food-falls; Carcasses; Deep-sea; Imagery; Scavengers.
Ano: 2003 URL: http://archimer.ifremer.fr/doc/00321/43253/42984.pdf
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A real-time dive on active hydrothermal vents ArchiMer
Sarrazin, Jozee; Sarradin, Pierre-marie; Buffier, Erick; Christophe, Alain; Clodic, Guillaume; Desbruyeres, Damien; Fouquet, Yves; Gouillou, Michel; Jannez, Michel; Le Fur, Yann; Le Rest, Jacques; Lecornu, Fabrice; Lefort, Olivier; Lux, Stephanie; Millet, Brigitte; Guillemet, Pascal.
The Momareto cruise was held from August 6 to September 6, 2006 on the new French oceanographic vessel Pourquoi pas? The ROV Victor 6000 visited three vent fields, ranging from 850m to 2300m, on the Mid-Atlantic Ridge. The scientific objective of the cruise was to study the spatial and temporal dynamics of hydrothermal communities colonizing these active vent sites. Aside scientific and technological objectives, one of the major goals of this cruise was to share the excitement of our science with the public. For this, the results of the project were shared through different media. The most challenging and exciting communication event remains the real-time transmission of images acquired by the ROV Victor at 1700m depth to a 250 person audience on land.
Tipo: Text Palavras-chave: Deep-sea; Ecosystems; Outreach; Real-time.
Ano: 2007 URL: http://archimer.ifremer.fr/doc/2007/publication-3599.pdf
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Cutting the Umbilical: New Technological Perspectives in Benthic Deep-Sea Research ArchiMer
Brandt, Angelika; Gutt, Julian; Hildebrandt, Marc; Pawlowski, Jan; Schwendner, Jakob; Soltwedel, Thomas; Thomsen, Laurenz.
Many countries are very active in marine research and operate their own research fleets. In this decade, a number of research vessels have been renewed and equipped with the most modern navigation systems and tools. However, much of the research gear used for biological sampling, especially in the deep-sea, is outdated and dependent on wired operations. The deployment of gear can be very time consuming and, thus, expensive. The present paper reviews wire-dependent, as well as autonomous research gear for biological sampling at the deep seafloor. We describe the requirements that new gear could fulfil, including the improvement of spatial and temporal sampling resolution, increased autonomy, more efficient sample conservation methodologies for morphological...
Tipo: Text Palavras-chave: Deep-sea; Autonomous sampling devices; Sampling efficiency; Benthic research; Wire times; Robotics.
Ano: 2016 URL: https://archimer.ifremer.fr/doc/00335/44589/44306.pdf
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A new species of hesionid worm, Hesiocaeca methanicola sp nov (Polychaeta : Hesionidae), living in ice-like methane hydrates in the deep Gulf of Mexico ArchiMer
Desbruyeres, Daniel; Toulmond, André.
On July 14, 1997, in the Gulf of Mexico, a dense population of polychaete worms dwelling in methane hydrates associated with cold seeps was discovered and sampled at 538 meters depth. The worms belong to the family Hesionidae and represent a new species of the genus Hesiocaeca. They differ from the two previously described species by the shape of the prostomium, the shape of the setae and the presence of anal cirri.
Tipo: Text Palavras-chave: Annelida; Polychaeta; Hesionidae; Deep-sea; Methane hydrates; Gulf of Mexico.
Ano: 1998 URL: https://archimer.ifremer.fr/doc/00447/55811/62261.pdf
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Deep-sea demersal fish density estimates compared from simultaneous net catches and photography ArchiMer
Russell, Ra; Serafy, J.
The numbers of fish caught and photographed in the eastern North Atlantic (49-52°N and 10-15°W) were compared from 46 hauts, made between 1979 and 1983 using an epibenthic sledge with an ancillary camera. There were 1966 specimens captured and 258 photographed. Fish species of similar appearance were grouped to aid identification from photographs. The 20 speciesjgroups common to both gears were represented by 83.6% of the specimens captured. Although there was good correlation between the numbers, catch density was about one third of that photographed, demonstrating how much such estimates may be at variance. Larger species showed a greater discrepancy, to suggest net avoidance. A bow-wave might sweep aside less active animais. The camera also demonstrated...
Tipo: Text Palavras-chave: Benthos; Faune démersale; Densité de poissons; Photographies; Deep-sea; Demersal fish; Fish densities; Photographs.
Ano: 1986 URL: http://archimer.ifremer.fr/doc/00110/22107/19746.pdf
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Climate‐induced changes in the suitable habitat of cold‐water corals and commercially important deep‐sea fishes in the North Atlantic ArchiMer
Morato, Telmo; González‐irusta, José‐manuel; Dominguez‐carrió, Carlos; Wei, Chih‐lin; Davies, Andrew; Sweetman, Andrew K.; Taranto, Gerald H.; Beazley, Lindsay; García‐alegre, Ana; Grehan, Anthony; Laffargue, Pascal; Murillo, Francisco Javier; Sacau, Mar; Vaz, Sandrine; Kenchington, Ellen; Arnaud-haond, Sophie; Callery, Oisín; Chimienti, Giovanni; Cordes, Erik; Egilsdottir, Hronn; Freiwald, André; Gasbarro, Ryan; Gutiérrez‐zárate, Cristina; Gianni, Matthew; Gilkinson, Kent; Wareham Hayes, Vonda E.; Hebbeln, Dierk; Hedges, Kevin; Henry, Lea‐anne; Johnson, David; Koen‐alonso, Mariano; Lirette, Cam; Mastrototaro, Francesco; Menot, Lenaick; Molodtsova, Tina; Durán Muñoz, Pablo; Orejas, Covadonga; Pennino, Maria Grazia; Puerta, Patricia; Ragnarsson, Stefán Á.; Ramiro‐sánchez, Berta; Rice, Jake; Rivera, Jesús; Roberts, J. Murray; Ross, Steve W.; Rueda, José L.; Sampaio, Íris; Snelgrove, Paul; Stirling, David; Treble, Margaret A.; Urra, Javier; Vad, Johanne; Oevelen, Dick; Watling, Les; Walkusz, Wojciech; Wienberg, Claudia; Woillez, Mathieu; Levin, Lisa A.; Carreiro‐silva, Marina.
The deep sea plays a critical role in global climate regulation through uptake and storage of heat and carbon dioxide. However, this regulating service causes warming, acidification and deoxygenation of deep waters, leading to decreased food availability at the seafloor. These changes and their projections are likely to affect productivity, biodiversity and distributions of deep‐sea fauna, thereby compromising key ecosystem services. Understanding how climate change can lead to shifts in deep‐sea species distributions is critically important in developing management measures. We used environmental niche modelling along with the best available species occurrence data and environmental parameters to model habitat suitability for key cold‐water coral and...
Tipo: Text Palavras-chave: Climate change; Cold-water corals; Deep-sea; Fisheries; Fishes; Habitat suitability modelling; Octocorals; Scleractinians; Species distribution models; Vulnerable marine ecosystems.
Ano: 2020 URL: https://archimer.ifremer.fr/doc/00610/72211/71007.pdf
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A relationship between deep-sea benthic oxygen demand and oceanic primary productivity ArchiMer
Christensen, Jp.
A diagenetic model of porewater O-2 was used to examine the relationship between organic carbon flux to the sediments and benthic oxygen demand (BOD). The model predicted that the organic carbon influx to sediments balances BOD as long as sediments are oxygenated. The critical rate occurs when O-2 at infinite depth disappears. With influxes exceeding the critical rate, the O-2 flux into the sediments via molecular diffusion can not consume all incoming organic matter, and anaerobic conditions result in BOD underestimating the carbon influx. Given that low rates of deep-sea BOD approximate the carbon influx below 9 g.C.m(-2).y(-1), a significant multilinear regression was found between published BOD, primary productivity (P-p, both in g.C.m(-2).y(-1))(,)...
Tipo: Text Palavras-chave: Fonds marins; Oxygène; Production primaire; Respiration; Sédiments; Deep-sea; Oxygen; Primary productivity; Respiration; Sediments.
Ano: 2000 URL: http://archimer.ifremer.fr/doc/00325/43578/44046.pdf
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