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Registros recuperados: 2.235
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Review of the hydrothermal vent shrimp genus Mirocaris, redescription of M-fortunata and reassessment of the taxonomic status of the family Alvinocarididae (Crustacea : Decapoda : Caridea) ArchiMer
Komai, T; Segonzac, Michel.
The hydrothermal vent shrimp genus Mirocaris is reviewed. Morphological comparison between the two nominal species in the genus, M. fortunata and M. keldyshi, was made based on the re-examination of the holotype and paratypes of Mirocarisfortunata and the paratypes of M. keldyshi. Samples newly collected from various sites on the Mid-Atlantic Ridge were also examined. The validity of the genus Mirocaris has been confirmed. However, our study has revealed that the supposed morphological characters distinguishing M. fortunata and M. keldyshi do not provide significant taxonomic differences and further comparison failed to detect morphological differences between the two taxa. Thus M. keldyshi is synonymized with M. fortunata, and so there is only one single...
Tipo: Text Palavras-chave: Hydrothermalism; Mid Atlantic Ridge; Redescription; Synonym; Taxonomy; M. keldyshi; Mirocaris fortunata.
Ano: 2003 URL: http://archimer.ifremer.fr/doc/2003/publication-883.pdf
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Genetic diversity of the harmful family Kareniaceae (Gymnodiniales, Dinophyceae) in France, with the description of Karlodinium gentienii sp. nov.: A new potentially toxic dinoflagellate ArchiMer
Nezan, Elisabeth; Siano, Raffaele; Boulben, Sylviane; Six, Christophe; Bilien, Gwenael; Cheze, Karine; Duval, Audrey; Le Panse, Sophie; Quere, Julien; Chomerat, Nicolas.
The family Kareniaceae is mostly known in France for recurrent blooms of Karenia mikimotoi in the Atlantic, English Channel, and Mediterranean Sea and for the unusual green discoloration in the saltwater lagoon of Diana (Corsica) caused by Karlodinium corsicum in April 1994. In terms of diversity, this taxonomic group was long overlooked owing to the difficult identification of these small unarmored dinoflagellates. In this study, thanks to the molecular characterization performed on single cells from field samples and cultures, twelve taxonomic units were assigned to the known genera Karenia, Karlodinium and Takayama, whereas one could not be affiliated to any described genus. The molecular phylogeny inferred from the D1–D2 region of the LSU rDNA showed...
Tipo: Text Palavras-chave: Genetic diversity; Haemolytic; Kareniaceae; Pigments; Single cell; Taxonomy.
Ano: 2014 URL: http://archimer.ifremer.fr/doc/00225/33611/32310.pdf
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Contribution à l'étude du genre Pseudoscopelus (Chiasmodontidae) avec une espèce nouvelle, P. pierbartus n. sp., deux synonymies junior et une clé d'identification des espèces valides ArchiMer
Spitz, J; Quero, Jean-claude; Vayne, Jean-jacques.
The genus Pseudoscopelus Lutken, 1892 is easily distinguished from the other Chiasmodontidae by the presence of well-defined rows of photophores. Until 2005, eight species were known. Pseudoscopelus scriptus was the first described by Lutken in 1892, then P. sagamianus by Tanaka in 1908, P. stellatus by Beebe in 1932 and P. altipinnis by Parr in 1933. Later in 1934, Fowler described three new species: P. microps, P. cephalus, and P. obtusifrons. These three species, known from only one specimen each, have not been recorded since. Lastly, an easily distinguishable species, P. scutatus, was discovered by Krefft in 1971. In a recent review, Prokoviev and Kukuev (2005, 2006) confirmed the validity of all species and described a new one P. aphos,...
Tipo: Text Palavras-chave: Taxonomy; Junior synonymy; New species; ANE; P. pierbartus n. sp.; Pseudoscopelus; Chiasmodontidae.
Ano: 2007 URL: http://archimer.ifremer.fr/doc/2007/publication-3628.pdf
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Species are hypotheses: avoid connectivity assessments based on pillars of sand ArchiMer
Pante, Eric; Puillandre, Nicolas; Viricel, Amélia; Arnaud-haond, Sophie; Aurelle, Didier; Castelin, Magalie; Chenuil, Anne; Destombe, Christophe; Forcioli, Didier; Valero, Myriam; Viard, Frederique; Samadi, Sarah.
Connectivity among populations determines the dynamics and evolution of populations, and its assessment is essential in ecology in general and in conservation biology in particular. The robust basis of any ecological study is the accurate delimitation of evolutionary units, such as populations, metapopulations and species. Yet a disconnect still persists between the work of taxonomists describing species as working hypotheses and the use of species delimitation by molecular ecologists interested in describing patterns of gene flow. This problem is particularly acute in the marine environment where the inventory of biodiversity is relatively delayed, while for the past two decades, molecular studies have shown a high prevalence of cryptic species. In this...
Tipo: Text Palavras-chave: Connectivity; Marine organisms; Molecular systematics; Taxonomy.
Ano: 2015 URL: https://archimer.ifremer.fr/doc/00248/35952/35301.pdf
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Morphology and molecular phylogeny of prorocentrum consutum sp. nov. (dinophyceae), a new benthic dinoflagellate from south Brittany (northwestern France) ArchiMer
Chomerat, Nicolas; Sellos, Daniel Y.; Zentz, Frederic; Nezan, Elisabeth.
A new marine benthic Prorocentrum species from sandy habitats of South Brittany (northwestern France), P. consutum sp. nov., is described using LM and SEM and molecular phylogenetic analyses. Cells have a subcircular to broadly ovoid shape and are plainly flattened. They are 57-61 lm long and 52-55 lm wide. A central pyrenoid is present, and the kidney-shaped nucleus is positioned in the posterior region. In right valve view, the periflagellar area is deeply excavated, and the left valve forms a prominent apical ridge. The periflagellar area consists of nine platelets, and a small narrow collar is present around the flagellar pore. The ornamentation of this new species is very peculiar and is characterized by a ring of round areolae located at the...
Tipo: Text Palavras-chave: Taxonomy; SSU rDNA; SEM; Prorocentrum; Nuclear DNA; Molecular phylogeny; LSU rDNA; Dinoflagellates.
Ano: 2010 URL: http://archimer.ifremer.fr/doc/2010/publication-7449.pdf
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Biodiversity of shallow-water brachiopods from New Caledonia, SW Pacific, with description of a new species ArchiMer
Bitner, Maria Aleksandra.
Twelve species of recent brachiopods belonging to the genera Lingula, Discradisca, Novocrania, Xenobrochus, Eucalathis, Frenulina, Argyrotheca, Campages, Thecidellina and Lacazella were identified in samples collected during shallow-water cruises around New Caledonia, southwest Pacific. Six genera, Lingula, Xenobrochus, Eucalathis, Frenulina, Campages and Thecidellina, have been already reported from the New Caledonian region, while four genera, Discradisca, Novocrania, Argyrotheca and Lacazella are the first records from this region. Additionally, Discradisca stella is the first discinid brachiopod recognized in the New Caledonia area. One new species is described, the megathyridid Argyrotheca neocaledonensis n. sp. The biogeographical affinities of the...
Tipo: Text Palavras-chave: Recent brachiopods; Biogeography; Shallow water; New Caledonia; Southwest Pacific; Taxonomy; New species.
Ano: 2010 URL: https://archimer.ifremer.fr/doc/00466/57793/60061.pdf
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Taxonomic Re-Investigation and Geochemical Characterization of Reid’s (1974) Species of Spiniferites from Holotype and Topotype Material ArchiMer
Gurdebeke, Pieter R.; Mertens, Kenneth; Bogus, Kara; Marret, Fabienne; Chomerat, Nicolas; Vrielinck, Henk; Louwye, Stephen.
The genus Spiniferites currently encompasses 142 dinoflagellate cyst species. Some Spiniferites species are difficult to identify because of an incomplete or doubtful description, and/or substandard iconography. This study re-describes and re-illustrates the Spiniferites holotypes first described by Reid in 1974 Reid PC. 1974. Gonyaulacacean dinoflagellate cysts from the British Isles. Nova Hedwigia. 25:579–637. [Google Scholar]. It also discusses topotype material from surface sediments recovered from British estuaries, and attempts to provide further constraints on the classification of species in this genus using the geochemical characterization of their cyst walls. Reid described four new Spiniferites species: Spiniferites belerius, Spiniferites...
Tipo: Text Palavras-chave: Dinoflagellate cyst; Redescription; Taxonomy; Geochemistry; Cyst wall composition; FTIR; Dinosporin.
Ano: 2018 URL: https://archimer.ifremer.fr/doc/00471/58306/60847.pdf
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Numération et approche qualitative des populations bactériennes des lagunes aménagées de Certes (Arcachon). I. Bactéries hétérotrophés aérobies ArchiMer
Baleux, B.; Caumette, P.; Trousselier, M..
Numeration, biomass, distribution within time, some physiological characters and a taxonomical outline, with a standardized micro method, of aerobic hétérotrophie bacteria isolated from sediments an waters, from fishponds of "Domaine de Certes" (Arcachon) from june 1977 to may 1978 are described. Number of hétérotrophie bacteria evolved in a significant way, according to seasons, and bacterial biomass is higher in the sediments than in the waters. Metabolic or physiological differences (proteolysis, denitrification) appeared among populations due to the origin of sediments. Moreover the qualitative study pointed out taxonomical units as Bacillus associated to seasons, or Agrobacterium associated to vegetable detritical sediments.
Tipo: Text Palavras-chave: Lagunes; Bactéries hétérotrophes aerobies; Biomasse; Taxonomie; Micro méthode; Enzymatiques; Lagoons; Aerobic heterotrophic bacteria; Biomass; Taxonomy; Enzymatic micro methods.
Ano: 1979 URL: http://archimer.ifremer.fr/doc/00306/41677/40886.pdf
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Application of a digital pattern recognition system to Dinophysis acuminata and D-sacculus complexes ArchiMer
Truquet, Philippe; Lassus, Patrick; Honsell, Giorgio; Le Dean, Loic.
An image discrimination technique was developed to improve specific identification of some toxic Dinophysis cells (marine dinoflagellates involved in diarrhoeic shellfish poisoning), especially the ''acuminata'' and ''sacculus'' groups, which can be present at different ratios in natural sea-water samples collected during toxic episodes. This work was performed with image analysis software SAMBA (TITN Alcatel) using preserved cells directly observed through an inverted microscope and recorded with a video camera before further processing. All morphometric parameters used for discrimination of 7 different species or morphotypes of Dinophysis were tested with discriminant analysis. This study indicates that Dinophysis sp. and D. pavillardi seem well...
Tipo: Text Palavras-chave: Dinophysis sp.; Analyse d'image; Taxonomie; Phytoplancton; Dinophysis sp; Image analysis; Taxonomy; Phytoplankton.
Ano: 1996 URL: http://archimer.ifremer.fr/doc/00188/29890/28337.pdf
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First record of Marteilia sp in mussels Mytilus galloprovincialis in Croatia ArchiMer
Zrncic, Snjevana; Le Roux, Frédérique; Oraic, Drazen; Sostaric, Branko; Berthe, Franck.
Marteiliosis is a disease of molluscs caused by Marteilia refringens in Europe and M. sydneyi in Australia. During routine examination of cultured mussels Mytilus galloprovinciallis in the northern Adriatic, the occurrence of Marteilia sp. was recorded with a prevalence of 5 %. This parasite was not detected in flat oysters reared in the same area. The affiliation of the detected parasite in M. galloprovinciallis was confirmed by in situ hybridization using a M. refringens probe, specific at the genus level. DNA of these infected mussels originating from the same area will be used to clarify the taxonomic position of this species within the genus Marteilia using a molecular approach.
Tipo: Text Palavras-chave: Taxonomy; Detection; Mytilus galloprovincialis; Parasite; Marteilia maurini.
Ano: 2001 URL: http://archimer.ifremer.fr/doc/2001/publication-817.pdf
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On Plesionika persica (Kemp, 1925) and P. reflexa Chace, 1985 (Crustacea: Decapoda: Pandalidae) from India ArchiMer
Chan, Tin-yam; Chakraborty, Rekha Devi; Purushothaman, P.; Kuberan, G.; Yang, Chien-hui.
The availability of Indian specimens of Plesionika persica (Kemp, 1925) and P. reflexa Chace, 1985 provided more information on the taxonomy around these two species. Moreover, it is the first record of P. persica to India. Although P. taiwanica Chan and Yu, 2000 is superficially rather similar to P. persica, there are many differences between them and probably it is inappropriate to establish a species group for these two species. It is likely that all previous records of P. ensis (A. Milne-Edwards, 1881) from India actually represent P. reflexa Chace, 1985. Nevertheless, the present Indian specimens of P. reflexa have more than 10% COI sequence divergence from the topotypic materials of both P. ensis and P. reflexa, and the epipods at the pereiopods III...
Tipo: Text Palavras-chave: Plesionika; Deep-sea; Shrimps; Taxonomy; India; First record.
Ano: 2018 URL: https://archimer.ifremer.fr/doc/00659/77089/78446.pdf
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A new potentially toxic Azadinium species (Dinophyceae) from the Mediterranean Sea, A. dexteroporum sp. nov. ArchiMer
Percopo, Isabella; Siano, Raffaele; Rossi, Rachele; Soprano, Vittorio; Sarno, Diana; Zingone, Adriana.
A new photosynthetic planktonic marine dinoflagellate, Azadinium dexteroporum sp. nov., is described from the Gulf of Naples (South Tyrrhenian Sea, Mediterranean Sea). The plate formula of the species, Po, cp, X, 4, 3a, 6, 6C, 5?S, 6'" and 2, is typical for this recently described genus. Azadinium dexteroporum is the smallest rep-resentative of the genus (8.5m average length, 6.2m average width) and shares the presence of a small antapical spine with the type species A.spinosum and with A.polongum. However, it differs from all other Azadinium species for the markedly asymmetrical Po plate and the position of the ventral pore, which is located at the right posterior end of the Po plate. Another peculiarity of A.dexteroporum is the pronounced concavity of...
Tipo: Text Palavras-chave: Azadinium; Azaspiracid; Dinoflagellate; LC; MS-TOF; LTER-MC; Mediterranean Sea; Phylogeny; Taxonomy.
Ano: 2013 URL: http://archimer.ifremer.fr/doc/00171/28199/27278.pdf
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Mikrocytos roughleyi taxonomic affiliation leads to the genus Bonamia (Haplosporidia) ArchiMer
Cochennec, Nathalie; Reece, K.; Berthe, Franck; Hine, Mike.
Microcell-type parasites of oysters are associated with a complex of diseases in different oyster species around the world. The etiological agents are protists of very small size that are very difficult to characterize taxonomically. Associated lesions may vary according to the host species, and their occurrence may be related to variations in tissue structure. Lesion morphology cannot be used to distinguish the different agents involved. Ultrastructural observations on Mikrocytos roughleyi revealed similarities with Bonamia spp., particularly in regard to the presence of electron-dense haplosporosomes and mitochondria, whose absence from M mackini also indicate that M roughleyi and M mackini are not congeneric. A partial small subunit (ssu) rRNA gene...
Tipo: Text Palavras-chave: Small subunit rDNA; Taxonomy; Microcell; Bonamosis; Saccostrea glomerata; Mikrocytos roughleyi.
Ano: 2003 URL: https://archimer.ifremer.fr/doc/2003/publication-2816.pdf
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Biodiversity and phylogeny of Ammotheidae (Arthropoda: Pycnogonida) ArchiMer
Sabroux, Romain; Corbari, Laure; Krapp, Franz; Bonillo, Celine; Le Prieur, Stepahnie; Hassanin, Alexandre.
The family Ammotheidae is the most diversified group of the class Pycnogonida, with 297 species described in 20 genera. Its monophyly and intergeneric relationships have been highly debated in previous studies. Here, we investigated the phylogeny of Ammotheidae using specimens from poorly studied areas. We sequenced the mitochondrial gene encoding the first subunit of cytochrome c oxidase (CO1) from 104 specimens. The complete nuclear 18S rRNA gene was sequenced from a selection of 80 taxa to provide further phylogenetic signal. The base composition in CO1 shows a higher heterogeneity in Ammotheidae than in other families, which may explain their apparent polyphyly in the CO1 tree. Although deeper nodes of the tree receive no statistical support,...
Tipo: Text Palavras-chave: Pantopoda; Taxonomy; DNA phylogeny; Barcode of life; Strand-bias.
Ano: 2017 URL: https://archimer.ifremer.fr/doc/00484/59530/62518.pdf
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Les poissons de la famille Echeneididae (Remoras) de la Mer Ligure et de la Mer Tyrrhenienne ArchiMer
Tortonese, E.
Five spp of Echeneididae are presently known in the Mediterranean: Echeneis naucrates L., Remora remora (L.), R. brachyptera (Lowe), R. australis (Benn) and Rhombochirus osteochir (Cuv). All of them may now be reported from the area comprising the Ligurian and the Tyrrhenian seas. Many mistakes occurred in the past, chiefly concerning R. remora a name too often wrongly applied to different spp. Echeneis holbrooki from the gulf of Genoa is really E. naucrates. Only 2 specimens of R. brachyptera were found, both in Sicilian waters. R. australis is here recorded from the Tyrrhenian sea. Rh. osteochir has been hitherto overlooked, but probably is the commonest Echeneid in the Mediterranean. A list is given of specimens from several localities (Gulf of Genoa,...
Tipo: Text Palavras-chave: Tyrrhenien Seas; Ligurian sea; Taxonomy; Remoras; Echeneididae.
Ano: 1973 URL: http://archimer.ifremer.fr/doc/1973/publication-2163.pdf
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Pleuronectidae de l'île de la Réunion et de Madagascar. II Genres Samaris et Samariscus ArchiMer
Quero, Jean-claude; Hensley, D; Mauge, A.
Among specimens of Samarinae (pleuronectidae) recently collected from the waters of Reunion Island and Madagascar are three species new to science (Samaris costae, Samariscus nielseni and Samariscus desoutterae). Another species represented in the collections is an unidentifiable Samaris species. Keys to Indo-Pacific species of Samaris. Samariscus and Plagiopsetta are presented. NOT CONTROLLED OCR
Tipo: Text Palavras-chave: New species; Taxonomy; Malagasy Rep.; Reunion Island; ISW; Samariscus nielseni n. sp.; Samariscus desoutterae n. sp.; Samaris costae n. sp.; Pleuronectidae.
Ano: 1989 URL: http://archimer.ifremer.fr/doc/1989/publication-3783.pdf
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Integrative taxonomy revisits the ontogeny and trophic niches of Rimicaris vent shrimps ArchiMer
Methou, Pierre; Michel, Loic; Segonzac, Michel; Cambon-bonavita, Marie-anne; Pradillon, Florence.
Among hydrothermal vent species, Rimicaris exoculata is one of the most emblematic, hosting abundant and diverse ectosymbioses that provide most of its nutrition. Rimicaris exoculata co-occurs in dense aggregates with the much less abundant Rimicaris chacei in many Mid-Atlantic Ridge vent fields. This second shrimp also houses ectosymbiotic microorganisms but has a mixotrophic diet. Recent observations have suggested potential misidentifications between these species at their juvenile stages, which could have led to misinterpretations of their early-life ecology. Here, we confirm erroneous identification of the earliest stages and propose a new set of morphological characters unambiguously identifying juveniles of each species. On the basis of this...
Tipo: Text Palavras-chave: Hydrothermal vents; Stable isotopes; Taxonomy; Crustaceans; Life history; Trophic shift.
Ano: 2020 URL: https://archimer.ifremer.fr/doc/00640/75227/75368.pdf
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Four new species of Kinorhyncha from the Gulf of California, eastern Pacific Ocean ArchiMer
Cepeda, Diego; Álvarez-castillo, Lucia; Hermoso-salazar, Margarita; Sanchez, Nuria; Gomez, Samuel; Pardos, Fernando.
Several meiofaunal samples from the central and lower Gulf of California were studied. Four new species of kinorhynchs, Cristaphyes fortis sp. nov., Higginsium mazatlanensis sp. nov., Cephalorhyncha teresae sp. nov. and Echinoderes xalkutaat sp. nov., are described herein. Cristaphyes fortis sp. nov. may be distinguished from its most similar congeners by its more strongly developed pachycycli and ball-and-socket joints and the presence of unpaired paradorsal setae on segments 2, 4 and 6, two pairs of ventrolateral setae on segment 5, one pair of ventrolateral setae on segments 2–4, 6–7 and 10, and one pair of ventromedial setae on segments 8–9. Higginsium mazatlanensis sp. nov. is easily distinguished from its congeners by the combined presence of...
Tipo: Text Palavras-chave: Kinorhynchs; Meiofauna; Biodiversity; Taxonomy; Pycnophyidae; Echinoderidae.
Ano: 2019 URL: https://archimer.ifremer.fr/doc/00501/61246/64824.pdf
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Physiological features of Halomonas lionensis sp. nov., a novel bacterium isolated from a Mediterranean Sea sediment ArchiMer
Gaboyer, Frederic; Vandenabeele-trambouze, Odile; Cao, Junwei; Ciobanu, Maria-cristina; Jebbar, Mohamed; Le Romancer, Marc; Alain, Karine.
A novel halophilic bacterium, strain RHS90T, was isolated from marine sediments from the Gulf of Lions, in the Mediterranean Sea. Its metabolic and physiological characteristics were examined under various cultural conditions, including exposure to stressful ones (oligotrophy, high pressure and high concentrations of metals). Based on phylogenetic analysis of the 16S rRNA gene, the strain was found to belong to the genus Halomonas in the class Gammaproteobacteria. Its closest relatives are H. axialensis and H. meridiana (98% similarity). DNA-DNA hybridizations indicated that the novel isolate is genotypically distinct from these species. The DNA G+C content of the strain is 54.4 mol%. The main fatty acids (C18:1ω7c, 2-OH iso-C15:0, C16:0 and/or C19:0 cyclo...
Tipo: Text Palavras-chave: Halomonas; Taxonomy; Environmental adaptation; Metal tolerance; Poly-beta-hydroxyalkanoate; Compatible.
Ano: 2014 URL: http://archimer.ifremer.fr/doc/00201/31253/29658.pdf
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Observations ultrastructurales sur Ameson nelsoni (Sprague, 1950) microsporidie parasite de la crevette Parapenaeus longirostris Lucas. Consequences taxonomiques. ArchiMer
Loubes, Claude; Maurand, Jean; Comps, Michel; Campillo, Albert.
The sporogony of A. nelsoni is of the apansporoblastic type. Diplocaryons always occur during merogony, never occur during sporogony. Sporoblasts are produced by fission of a multinucleate and elongated plasmodium. Spore morphogenesis begins before the end of the end of the sporoblasts individualization. The polaroplast has a very dense outer area. The genus Ameson is very much like genus Perezia and both are badly classified respectively in the families Nosematidae and Unikaryonidae. The creation of the new family Pereziidae is proposed for both genera.
Tipo: Text Palavras-chave: MED; Ameson nelsoni; Speciation; Taxonomy.
Ano: 1977 URL: http://archimer.ifremer.fr/doc/1977/publication-1969.pdf
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