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La conchyliculture française - 1° Partie : Le milieu naturel et ses variations ArchiMer
Marteil, Louis.
Table of Contents The Natural Environment Production centres Oyster farming centres Mussel farming centres Chapter I. - The Physicochemical Environment I. Sea Water a) Transparency, turbidity b) Temperature c) Salinity d) Dissolved gases e) Substances dissolved in the water f) Water movements g) Hydrology of the main shellfish farming centres II. Soils a) Soil properties b) Mechanical amendment of soils, its effects c) Fertilisation of soils in shellfish farming d) Changes in soils due to farming Bibliography Chapter II. - The Natural Environment Phytoplankton Zooplankton Basic biology...
Tipo: Text Palavras-chave: Zooplankton; Phytoplankton; Water pollution; Sea water; Natural environment; Shellfish culture.
Ano: 1974 URL: http://archimer.ifremer.fr/doc/1974/publication-1776.pdf
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An Ocean-Colour Time Series for Use in Climate Studies: The Experience of the Ocean-Colour Climate Change Initiative (OC-CCI) ArchiMer
Sathyendranath, Shubha; Brewin, Robert; Brockmann, Carsten; Brotas, Vanda; Calton, Ben; Chuprin, Andrei; Cipollini, Paolo; Couto, André; Dingle, James; Doerffer, Roland; Donlon, Craig; Dowell, Mark; Farman, Alex; Grant, Mike; Groom, Steve; Horseman, Andrew; Jackson, Thomas; Krasemann, Hajo; Lavender, Samantha; Martinez-vicente, Victor; Mazeran, Constant; Mélin, Frédéric; Moore, Timothy; Müller, Dagmar; Regner, Peter; Roy, Shovonlal; Steele, Chris; Steinmetz, François; Swinton, John; Taberner, Malcolm; Thompson, Adam; Valente, André; Zühlke, Marco; Brando, Vittorio; Feng, Hui; Feldman, Gene; Franz, Bryan; Frouin, Robert; Gould, Richard; Hooker, Stanford; Kahru, Mati; Kratzer, Susanne; Mitchell, B.; Muller-karger, Frank; Sosik, Heidi; Voss, Kenneth; Werdell, Jeremy; Platt, Trevor.
Ocean colour is recognised as an Essential Climate Variable (ECV) by the Global Climate Observing System (GCOS); and spectrally-resolved water-leaving radiances (or remote-sensing reflectances) in the visible domain, and chlorophyll-a concentration are identified as required ECV products. Time series of the products at the global scale and at high spatial resolution, derived from ocean-colour data, are key to studying the dynamics of phytoplankton at seasonal and inter-annual scales; their role in marine biogeochemistry; the global carbon cycle; the modulation of how phytoplankton distribute solar-induced heat in the upper layers of the ocean; and the response of the marine ecosystem to climate variability and change. However, generating a long time series...
Tipo: Text Palavras-chave: Ocean colour; Water-leaving radiance; Remote-sensing reflectance; Phytoplankton; Chlorophyll-a; Inherent optical properties; Climate Change Initiative; Optical water classes; Essential Climate Variable; Uncertainty characterisation.
Ano: 2019 URL: https://archimer.ifremer.fr/doc/00589/70072/68045.pdf
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Phytoplankton spring bloom of the Gironde plume waters in the Bay of Biscay: early phosphorus limitation and food-web consequences ArchiMer
Herbland, Alain; Delmas, Daniel; Laborde, P; Sautour, B; Artigas, F.
During the spring 1995 (2-25 May), a cruise was carried on the RV Poseidon (Germany) on the continental shelf of the south Bay of Biscay. The objective was a comprehensive study of the planktonic food web within the Gironde plume waters. In these waters phosphate was present at very low concentrations (undetectable to < 0.1 mu mol.L-1), whereas nitrate, silicate and ammonium concentrations were much higher (several mu mol.L-1 for nitrate and silicate and 0.5 to 1.0 mu mol.L-1 for ammonium). The size distribution of the phytoplankton biomass (estimated from chlorophyll a measurements by high performance liquid chromatography) and primary production (measured by C-14 in situ method) showed a great proportion of small (40 to 70 % < 3 mu m) and active...
Tipo: Text Palavras-chave: Phosphate; Phytoplancton; Facteur limitant; Estuaire; Eau côtière; Phosphate; Phytoplankton; Limiting factor; Estuarine water; Coastal water.
Ano: 1998 URL: http://archimer.ifremer.fr/doc/1998/publication-850.pdf
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The evolution of light and vertical mixing across a phytoplankton ice-edge bloom ArchiMer
Randelhoff, Achim; Ozierm, Laurent; Massicotte, Philippe; Becu, Guislain; Gali, Marti; Lacour, Leo; Dumont, Dany; Vladoiu, Anda; Marec, Claudie; Bruyant, Flavienne; Houssais, Marie-noelle; Tremblay, Jean-eric; Deslongchamps, Gabriele; Babin, Marcel.
During summer, phytoplankton can bloom in the Arctic Ocean, both in open water and under ice, often strongly linked to the retreating ice edge. There, the surface ocean responds to steep lateral gradients in ice melt, mixing, and light input, shaping the Arctic ecosystem in unique ways not found in other regions of the world ocean. In 2016, we sampled a high-resolution grid of 135 hydrographic stations in Baffin Bay as part of the Green Edge project to study the ice-edge bloom, including turbulent vertical mixing, the under-ice light field, concentrations of inorganic nutrients, and phytoplankton biomass. We found pronounced differences between an Atlantic sector dominated by the warm West Greenland Current and an Arctic sector with surface waters...
Tipo: Text Palavras-chave: Arctic; Phytoplankton; Ice edge; Spring bloom; Light; Turbulence.
Ano: 2019 URL: https://archimer.ifremer.fr/doc/00504/61530/65391.pdf
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Seasonal variability in microplanktonic biomasses in the Gironde dilution plume (Bay of Biscay): relative importance of bacteria ArchiMer
Artigas, Lf.
Bacterial and phytoplankton biomasses were estimated in a four-year study along a saline gradient (the dilution plume of the Gironde estuary on the Aquitanian continental shelf), by measuring bacterial abundance and mean cell volumes (epifluorescence counts) and chlorophyll-a concentrations tin vitro fluorescence). The spatial and temporal distribution of phytoplankton enabled us to determine the seasonal succession of algal blooms, sprouting in the marine waters of the inner shelf in early spring (picoplanktonic forms), reaching their annual maximum (10 mu g L-1) in plume waters in advanced spring, and moving to estuarine waters in the summer (> 20 mu m forms). Bacterial biomasses followed mainly a decreasing dilution gradient, especially in winter and...
Tipo: Text Palavras-chave: Bactéries; Phytoplancton; Rapport des biomasses microbiennes; Variabilité saisonnière; Panache de dilution girondin; Bacterioplankton; Phytoplankton; Microbial biomass ratio; Seasonal variability; Gironde dilution plume.
Ano: 1998 URL: http://archimer.ifremer.fr/doc/00325/43659/43210.pdf
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Preliminary estimate of primary production by phytoplankton in Marennes-Oléron Bay, France ArchiMer
Struski, Caroline; Bacher, Cedric.
The macrotidal bay of Marennes-Oléron is the most important French site for shellfish production (oysters and mussels); yet the primary productivity of the phytoplankton compartment in this system is not well known. In this study, photosynthetic parameters were determined using 14C incubations of bottom and surface water samples, during fall, winter and summer (2001¿2002), along a north¿south transect in the bay. Estimates of primary productivity showed that water column primary production is light-limited in the bay and that a BZpI0 type model can be applied. Spatial differences existed in the bay, with a more productive northern zone and less productive river area. With a water column primary production of 185 g C m&#8722;2 yr&#8722;1,...
Tipo: Text Palavras-chave: BZpI0 model; Tidal bay; Light limitation; Turbidity; Phytoplankton; Photosynthesis parameters.
Ano: 2006 URL: http://archimer.ifremer.fr/doc/2006/publication-572.pdf
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Contribution a l'etude du microplancton des etangs corses de Diana et Urbino et du secteur marin adjacent. ArchiMer
Paulmier, Gerard.
Investigations carried out in both Corsica lagoons Diana and Urbino during the period from January to August 1985, permitted to define the main characteristics of microplankton cycle. Two phytoplanktonic blooms have been observed, first in winter, second less important in July-August. Any correlation cannot be observed between phytoplanktonic cycle or one its main components, and both environmental variables temperature and salinity. However dissolved oxygen ratio may be subject to large summer variations, drifting towards until ecological desequilibrious.
Tipo: Text Palavras-chave: Algal blooms; Dissolved oxygen; Salinity effects; Temperature effects; Phytoplankton; Plankton.
Ano: 1984 URL: http://archimer.ifremer.fr/doc/1984/publication-1800.pdf
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Sedimentation pathways in the Indian sector of the Southern Ocean during a production regime dominated by regeneration ArchiMer
Cailliau, C; Belviso, S; Goutx, M; Bedo, A; Park, Y; Charriaud, E.
During summer 1994, the production regime at 2 sites located in the Indian sector of the Southern Ocean, one in the Permanent Open Ocean Zone (POOZ) at 52 degrees S, and a second in the Seasonal Ice Zone (SIZ) at 63 degrees S, was dominated by regeneration (0.3 < f-ratio < 0.4). Two time series, each of about 4 d, were performed over pre-determined time intervals of 4 h using a free-floating sediment trap set at 200 m at the 2 sites. Hourly variations of C, N, chlorophyll a (chl a) and its degradation products, taxon-specific pigments, lipid classes and dimethylsulfoniopropionate (DMSP) were measured simultaneously. Measurements in the water column were done during the sediment trap drifting. Fucoxanthin, a typical diatom pigment, was the major...
Tipo: Text Palavras-chave: Antarctic; Austral ocean; Sediment traps; Diel cycles; Phytoplankton; Pigments; Lipids; DMSP; DMS.
Ano: 1999 URL: https://archimer.ifremer.fr/doc/00240/35083/33651.pdf
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Evaluation of the partial renewal of in situ phytoplankton microcosms and application to the impact assessment of bentazon and dimethenamid ArchiMer
De La Broise, Denis; Stachowski-haberkorn, Sabine.
Microcosms, each consisting of 2 L natural surface seawater maintained in 2.3-L glass bottles, were immersed at a depth of 6 metres. The renewal of ten percent of microcosm volumes was carried out every other day. Phytoplankton-containing seawater was used for renewal (previously filtered through 25-, 50- or 200-μm cut-off). Phytoplankton community pigment analysis (by HPLC) and flow cytometry analysis were performed. After 13 days, data exhibited phytoplankton characteristics in microcosms in the same range as that of the natural surrounding sea water over the same period. Furthermore, in these microcosms, a negative correlation was observed between the filtration cut-off used for renewal water, and the eukaryote cell count. Herbicides were tested as...
Tipo: Text Palavras-chave: Phytoplankton; Microcosm; Herbicides; Dimethenamid; Bentazon.
Ano: 2012 URL: http://archimer.ifremer.fr/doc/00088/19889/17548.pdf
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Dynamics of an estuarine ecosystem: The influence of flow patterns on phytoplankton trends in the Chesapeake Bay ArchiMer
Marshall, Hg; Alden, Rw.
Long term trends in the phytoplankton of the lower Chesapeake Bay were identified using flow corrected and uncorrected data sets, with 22 of 23 significant trends similar under both conditions. The major trends between 1985-1992 were for: 1) reduced phytoplankton concentrations; 2) decreasing numbers of phytoplankton taxa during spring, summer and fall months; and 3) seasonally mixed trends for diatom abundance in waters below the pycnocline, with spring months having decreasing densities, and increasing abundance trends in November and December. The flow patterns had different effects on the trends. Flow diminished the magnitude of the trends for total phytplankton concentrations, so these trends were greater in the flow corrected data. There were mixed...
Tipo: Text Palavras-chave: Phytoplankton; Chesapeake Bay; Trends; Flow.
Ano: 1997 URL: http://archimer.ifremer.fr/doc/00093/20383/18051.pdf
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Three Dinophyceae from Clipperton Island lagoon (eastern Pacific Ocean), including a description of Peridiniopsis cristata var. tubulifera var. nov. ArchiMer
Coute, Alain; Perrette, Catherine; Chomerat, Nicolas.
Clipperton Island is a small French coral atoll in the eastern Pacific Ocean, which has been rarely investigated because of its remote location and difficult access. There is little scientific information on this ecosystem and only a few microalgae have been reported from the lagoon. To date, only one dinoflagellate taxon, Peridiniopsis cristata, is known to inhabit the lagoon. During an expedition in 2005 to study the lagoon and the surrounding oceanic waters of Clipperton Island, a further investigation of the lagoon phytoplankton was undertaken. In addition to P. cristata, which was still abundant in the upper water layer, two other thecate dinoflagellates were recorded. One dinoflagellate was identified as Durinskia baltica, while the other had the...
Tipo: Text Palavras-chave: Dinoflagellates; Lagoon; Morphology; Phytoplankton; Taxonomy.
Ano: 2012 URL: http://archimer.ifremer.fr/doc/00070/18086/15633.pdf
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Hydrologie et distribution de dinophysis en juin 1988, dans la frange côtière nord-Gascogne ArchiMer
Lassus, Patrick; Truquet, Philippe; Le Dean, Loic; Bardouil, Michele.
During the oceanographic cruise of June 1988, phytoplankton and correlated hydrological parameters were studied in the coastal area between Camaret and Ile d'Oléron. 62 stations were sampled in the 0-30 m layer within the 50 m depth limited coastal area. Observations focused on two toxic dinoflagellate species: Dinophysis spp and Gyrodinium aureolum. Dinophysis spp is more abundant in the Loire/Vilaine area, which is.characterized by high surface Nitrate levels, high 30 m depth Phosphate levels and Chlorophyll a amounts higher than elsewhere during the survey. This particuliar pattern can be related to the Nutrient outputs of Loire and Vilaine Rivers. Max. Dinophysis concentrations were observed in Vilaine bay (very high Phosphate levels) and in Douarnenez...
Tipo: Text Palavras-chave: Phytoplancton; Dinophysis; Gyrodinium aureolum; Hydrologie; Sels nutritifs; Campagne côtière; Nord Gascogne; Phytoplankton; Dinophysis; Gyrodinium aureolum; Hydrology; Nutrients; Coastal cruise; Northern Biscay.
Ano: 1989 URL: http://archimer.ifremer.fr/doc/00432/54323/58896.pdf
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Optimisation de l’identification et du dénombrement du microphytoplancton avec le système couplé de numérisation et d’analyse d’images FlowCAM – Zoo/PhytoImage (système innovant) ArchiMer
Grosjean, Philippe; Wacquet, Guillaume.
This report details the work accomplished to enhance the Zoo/PhytoImage software to optimize its use for the analysis of phytoplankton samples in general, but more particularly, in the framework of an operational survey of coastal seawater (REPHY, IFREMER). Zoo/PhytoImage allows to analyze “numerically recorded” plankton samples, that is, by using digital images gathered with specialized devices such as the FlowCAM, or the FastCAM (see report 3). A machine learning approach allows to automatically classify the digitized particles into various taxonomic groups. Once this is done, global statistics are calculated on each sample, including the number of particles, the biomass, and the size spectrum per taxonomic group. Two major changes are introduced in the...
Tipo: Text Palavras-chave: Phytoplancton; REPHY; Analyse d'image; Classification supervisée; Dénombrement de cellules; Apprentissage actif; Manche; Atlantique.; Phytoplankton; REPHY; Image analysis; Machine learning; Cells enumeration; Active learning; The Channel; Atlantic Ocean.
Ano: 2016 URL: http://archimer.ifremer.fr/doc/00389/49990/50578.pdf
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Feeding and energetics of the great scallop, Pecten maximus, through a DEB model ArchiMer
Lavaud, Romain; Flye-sainte-marie, Jonathan; Jean, Fred; Emmery, Antoine; Strand, Oivind; Kooijman, Sebastiaan A. L. M..
We developed a full life-cycle bioenergetic model for the great scallop P. maximusrelying on the concepts of the Dynamic Energy Budget (DEB) theory. The covariation method was implemented to estimate the parameters of a standard DEB model. Such models are able to predict various metabolic processes from a food availability marker and temperature in the environment. However, suspension-feeders are likely to feed on various trophic sources, from microalgae cells to detritus. They are also able to sort and select food particles very efficiently, depending on their size, energetic value or quality. The present model includes a mechanistic description of the feeding processes, based on Kooijman’s Synthesizing Unit principle which allow to deal with several food...
Tipo: Text Palavras-chave: Pecten maximus; DEB theory; Synthesizing Units; Phytoplankton; Feeding process; Bay of Brest.
Ano: 2014 URL: http://archimer.ifremer.fr/doc/00162/27316/28458.pdf
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Zeaxanthin from Porphyridium purpureum induces apoptosis in human melanoma cells expressing the oncogenic BRAF V600E mutation and sensitizes them to the BRAF inhibitor vemurafenib ArchiMer
Juin, Camille; De Oliveira Junior, Raimundo Gonsalves; Fleury, Audrey; Oudinet, Chloe; Pytowski, Lior; Berard, Jean-baptiste; Nicolau, Elodie; Thiery, Valerie; Lanneluc, Isabelle; Beaugeard, Laureen; Prunier, Gregoire; Guedes Da Silva Almeida, Jackson Roberto; Picot, Laurent.
Zeaxanthin, an abundant carotenoid present in fruits, vegetables and algae was reported to exert antiproliferative activity and induce apoptosis in human uveal melanoma cells. It also inhibited uveal melanoma tumor growth and cell migration in nude mice xenograft models. Here we report that zeaxanthin purified from the rhodophyte Porphyridium purpureum (Bory) K.M.Drew & R.Ross, Porphyridiaceae, promotes apoptosis in the A2058 human melanoma cell line expressing the oncogenic BRAF V600E mutation. Zeaxanthin 40 μM (IC50) induced chromatin condensation, nuclear blebbing, hypodiploidy, accumulation of cells in sub-G1 phase, DNA internucleosomal fragmentation and activation of caspase-3. Western blot analysis revealed that zeaxanthin induced up-regulation...
Tipo: Text Palavras-chave: Cancer; Carotenoid; Melanoma; Microalgae; Phytoplankton; Zeaxanthin.
Ano: 2018 URL: http://archimer.ifremer.fr/doc/00444/55595/57227.pdf
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Essai d'aptitude par comparaison Inter-analystes pour l'évaluation des performances en identification et dénombrement du phytoplancton marin. Rapport d'évaluation des analystes du phytoplancton dans le cadre du réseau d'observation et de surveillance du phytoplancton et de l'hydrologie (REPHY) mis en œuvre par l'Ifremer. Exercice 2018 ArchiMer
Neaud-masson, Nadine; Brun, Melanie.
The determination of phytoplankton species and the estimation of their abundance in the context of the Phytoplankton and Hydrology Monitoring and Surveillance Network, implemented by Ifremer (REPHY), are based in 2018 on 25 analysts spread over 12 sites. Proficiency testing by inter-laboratory or inter-analyst comparison is used to evaluate the performance of laboratories or analysts on specific skills. An International Phytoplankton Inter-comparison (IPI) is organized annually by the Marine Institute Phytoplankton unit of Galway (Ireland), to evaluate marine phytoplankton identification and enumeration performance. The IPI is implementing its inter-comparison exercises through the Marine Institute Ireland in cooperation with the Intergovernmental...
Tipo: Text Palavras-chave: Phytoplancton; Comparaison Inter-Laboratoire; CIL; Comparaison Inter-Analyste; CIA; Essai d’aptitude; Phytoplankton; Inter-Laboratory Comparison; ILC; Inter-Analyst Comparison; IAC; Aptitude Test; International Phytoplankton Inter-comparison; IPI.
Ano: 2019 URL: https://archimer.ifremer.fr/doc/00592/70415/68505.pdf
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Variabilidad fitoplanctónica en 5 bahías, Islas Galápagos (Ecuador) OceanDocs
Tapia, M.E.; Torres, G..
El aporte de esta investigación, será dar una evaluación sobre la distribución cuali-cuantitativamente del fitoplancton y paralelamente iniciar una base de datos en 5 bahías de las Islas Galpagos.
Tipo: Journal Contribution Palavras-chave: Variability; Phytoplankton; Chlorophylls; Biomass; Geographical distribution; Species diversity; Phytoplankton; Biomass; Geographical distribution; Chlorophylls; Species diversity; Http://aims.fao.org/aos/agrovoc/c_13344; Http://aims.fao.org/aos/agrovoc/c_926; Http://aims.fao.org/aos/agrovoc/c_5083; Http://aims.fao.org/aos/agrovoc/c_1577; Http://aims.fao.org/aos/agrovoc/c_33954.
Ano: 2000 URL: http://hdl.handle.net/1834/2239
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Impacto de las floraciones algales nocivas en Uruguay: origen, dispersión, monitoreo, control y mitigación OceanDocs
Méndez, S.M..
Las floraciones algales nocivas (FANs) afectan la salud humana, la economía pesquera, el turismo y los ecosistemas acuáticos. Dado que el problema de las FANs es mundial, para minimizar sus efectos se han implementado programas de monitoreo en más de 50 países. El registro de especies de fitoplancton tóxico ha ido creciendo y cada vez se conoce más diversidad de toxinas producidas por estos microorganismos. En Uruguay, la Dirección Nacional de Recursos Acuáticos (DINARA) dependiente del Ministerio de Ganadería Agricultura y Pesca (MGAP) lleva a cabo el monitoreo simultáneo de las FANs y la toxicidad en los moluscos. Esta modalidad de monitoreo y la confirmación de la toxicidad de algunas especies de microalgas, permite establecer la relación de causalidad...
Tipo: Book Section Palavras-chave: M40; Phytoplankton; Algal blooms; Environmental monitoring; Plant control; Phytoplankton; Environmental monitoring; Algal blooms; Http://aims.fao.org/aos/agrovoc/c_13344; Http://aims.fao.org/aos/agrovoc/c_37876; Http://aims.fao.org/aos/agrovoc/c_32367.
Ano: 2006 URL: http://hdl.handle.net/1834/3245
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Composición y distribución del fitoplancton durante la prospección sísmica en la costa ecuatoriana, diciembre de 2008 OceanDocs
Tapia, M.E..
This work includes the composition and distribution of phytoplankton in the coastal region. For this purpose were established 23 stations on three regions and six sections divided from the northern region of Esmeraldas to the south of Puerto Bolívar, this work was carried out at the Research Vessel Orión in december 2008. The greater diversity of the phytoplankton community in the surface layer was observed in the Central Region, Specifically in section 4 with a total of 84 species, highlighting the dominant species of diatoms as Rhizosolenia stolterfothii, Thalasssiosira subtilis, R. imbricata, Proboscia alata, Chaetoceros affinis, and in the group there were abundant dinoflagellates Gonyaulax poledra and Goniodoma polyedricum, characteristics of the...
Tipo: Journal Contribution Palavras-chave: Composition; Distribution; Phytoplankton; Biological production; Species diversity.
Ano: 2013 URL: http://hdl.handle.net/1834/5752
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Impact des perturbations anthropiques sur l'évolution du phytoplancton de la lagune de Boughrara, ( tunisie ) OceanDocs
Romdhane, M.S.; Ben Rejeb-Jenhani, A..
La détérioration de la qualité des eaux de la lagune de Boughrara, conséquence de divers apports polluants et d’échanges d’eaux limités avec la mer, s’est traduite par un accroissement sévère de l’eutrophisation du milieu se manifestant notamment par d’importantes proliférations microalgales. L’analyse de l’évolution de l’ensemble des groupes phytoplanctoniques a montré que les périodes de forte biomasse algale sont caractérisées par des développements monospécifiques. L’importance relative croissante de la classe des dinoflagellés se manifestent par un net accroissement du rapport dinoflagellés / diatomées. Le très fort développement de l’espèce Gymnodinium cf nagasakiense , (densités maximales de l’ordre de 6.10 6 cellules par litre ) espèce connue...
Tipo: Journal Contribution Palavras-chave: Diatoms; Environmental factors; Lagoons; Phytoplankton; Geographical distribution.
Ano: 2002 URL: http://hdl.handle.net/1834/236
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