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Spatio-temporal trends in diversity of demersal fish assemblages in the Mediterranean ArchiMer
Farriols, M. Teresa; Ordines, Francesc; Carbonara, Pierluigi; Casciaro, Loredana; Di Lorenzo, Manfredi; Esteban, Antonio; Follesa, Cristina; García-ruiz, Cristina; Isajlovic, Igor; Jadaud, Angelique; Ligas, Alessandro; Manfredi, Chiara; Marceta, Bojan; Peristeraki, Panagiota; Vrgoc, Nedo; Massutí, Enric.
The high species richness, coupled with high proportion of endemism, makes the Mediterranean one of the world’s ‘biodiversity hotspots’. However, the continuous increase in fisheries in the last few decades has led to the overexploitation of their main commercial stocks. Using fishery-independent data collected under the framework of the MEDITS trawl surveys carried out over the last 20 years, we study the demersal fish diversity pattern in the Mediterranean at a large spatial and temporal scale to determine whether it is being affected by the general fishing overexploitation of the demersal resources. The detected diversity trends are compared with the spatio-temporal variation in bottom trawl fishing effort in the Mediterranean. Our results show a...
Tipo: Text Palavras-chave: Biodiversity; Fish assemblages; MEDITS; Bottom trawling; Fishing effort; Mediterranean Sea.
Ano: 2019 URL: https://archimer.ifremer.fr/doc/00584/69628/67484.pdf
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Sea anemones (Cnidaria: Actiniaria, Corallimorpharia, Ceriantharia, Zoanthidea) from marine shallow-water environments in Venezuela: new records and an updated inventory ArchiMer
González-muñoz, Ricardo; Simões, Nuno; Guerra-castro, Edlin J.; Hernández-ortíz, Carlos; Carrasquel, Gabriela; Mendez, Enio; Lira, Carlos; Rada, Martin; Hernández, Ivan; Pauls, Sheila M.; Croquer, Aldo; Cruz-motta, Juan J..
Background This study compiles the diversity of sea anemones in different shallow habitats (i.e. rocky shores, coral reefs, mangroves and sandy bottoms) in several locations of Venezuela, including the most important marine reserves of Venezuela: Morrocoy National Park, Mochima National Park, Archipiélago de Los Roques National Park, Laguna de La Restinga National Park, Isla de Cubagua, and Chichiriviche de la Costa. Results Twenty-six species of sea anemones sensu lato were documented, from which only two actiniarian species are newly recorded in Venezuela. In addition, specimens of the scientific collection of the Museo Oceanológico Hermano Benigno Román, of Isla de Margarita, Venezuela, were examined and its taxonomic status updated. Conclusions The...
Tipo: Text Palavras-chave: Caribbean Sea; Coral reefs; Biodiversity; Benthic invertebrate fauna.
Ano: 2016 URL: https://archimer.ifremer.fr/doc/00664/77595/79609.pdf
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Evaluating sediment and water sampling methods for the estimation of deep-sea biodiversity using environmental DNA ArchiMer
Brandt, Miriam; Pradillon, Florence; Trouche, Blandine; Henry, Nicolas; Liautard-haag, Cathy; Cambon-bonavita, Marie-anne; Cueff-gauchard, Valerie; Wincker, Patrick; Belser, Caroline; Poulain, Julie; Arnaud-haond, Sophie; Zeppilli, Daniela.
Despite representing one of the largest biomes on earth, biodiversity of the deep seafloor is still poorly known. Environmental DNA metabarcoding offers prospects for fast inventories and surveys, yet requires standardized sampling approaches and careful choice of environmental substrate. Here, we aimed to optimize the genetic assessment of prokaryote (16S), protistan (18S V4), and metazoan (18S V1–V2, COI) communities, by evaluating sampling strategies for sediment and aboveground water, deployed simultaneously at one deep-sea site. For sediment, while size-class sorting through sieving had no significant effect on total detected alpha diversity and resolved similar taxonomic compositions at the phylum level for all markers studied, it effectively...
Tipo: Text Palavras-chave: Biodiversity; Ecological genetics; Microbial ecology; Molecular ecology.
Ano: 2021 URL: https://archimer.ifremer.fr/doc/00689/80094/83149.pdf
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Etat de santé initial des habitats et peuplements de poissons des récifs de Chesterfield-Bellona, Parc Naturel de la Mer de Corail, Campagne de stations vidéo rotatives STAVIRO 2013 ArchiMer
Pelletier, Dominique; Bockel, Thomas; Roman, William; Carpentier, Liliane; Laugier, Thierry.
- The AMBIO project conducted a comprehensive video-based baseline assessment of coral reef fish communities and associated habitats in the New Caledonian lagoons. The surveys rely on remote unbaited underwater video observations, using the STAVIRO rotating technique. Chesterfield and Bellona remote reefs and atolls are located in the Coral Sea Marine Park, northwest of New Caledonia. -This 2013 survey is the first scientific survey covering the entire area, with a sampling design stratified according to reef type. 203 stations were validated within 10 days. They were analyzed to characterize the habitat surrounding each station, and fish communities, based on a list of 565 fish species (cf. AMBIO/A/1). - 34 indicators were computed and mapped (maps...
Tipo: Text Palavras-chave: Biodiversité; Ichtyofaune; Habitat; Vidéo sous-marine; STAVIRO; Evaluation; Suivi; Parc de la Mer de Corail; Aire Marine Protégée; AMP; Ecosystème corallien; Nouvelle-Calédonie; Indicateur; Tableau de bord; Serveur de cartes; Sextant; PAMPA; Biodiversity; Fish; Habitat; Underwater video; STAVIRO; Monitoring and assessment; Coral Sea Marine Park; Marine Protected Area; MPA; World Heritage; Coral reefs; New Caledonia; Indicator; Dashboard; Map server; Sextant; PAMPA.
Ano: 2016 URL: http://archimer.ifremer.fr/doc/00381/49247/49700.pdf
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A Global Plankton Diversity Monitoring Program ArchiMer
Batten, Sonia D.; Abu-alhaija, Rana; Chiba, Sanae; Edwards, Martin; Grahams, George; Jyothibabu, R.; Kitchener, John A.; Koubbis, Philippe; Mcquatters-gollop, Abigail; Muxagata, Erik; Ostle, Clare; Richardson, Anthony J.; Robinson, Karen, V; Takahashi, Kunio T.; Verheye, Hans M.; Wilson, Willie.
Plankton are the base of marine food webs, essential to sustaining fisheries and other marine life. Continuous Plankton Recorders (CPRs) have sampled plankton for decades in both hemispheres and several regional seas. CPR research has been integral to advancing understanding of plankton dynamics and informing policy and management decisions. We describe how the CPR can contribute to global plankton diversity monitoring, being cost-effective over large scales and providing taxonomically resolved data. At OceanObs09 an integrated network of regional CPR surveys was envisaged and in 2011 the existing surveys formed the Global Alliance of CPR Surveys (GACS). GAGS first focused on strengthening the dataset by identifying and documenting CPR best practices,...
Tipo: Text Palavras-chave: Continuous Plankton Recorder; Zooplankton; Phytoplankton; Global monitoring; Biodiversity; Ocean observing; Essential ocean variables.
Ano: 2019 URL: https://archimer.ifremer.fr/doc/00689/80060/83064.pdf
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Ecoviability for small-scale fisheries in the context of food security constraints ArchiMer
Cisse, Abdoul; Doyen, L.; Blanchard, Fabian; Bene, Christophe; Pereau, J. -c..
This paper applies a stochastic viability approach to a tropical small-scale fishery, offering a theoretical and empirical example of ecosystem-based fishery management approach that accounts for food security. The model integrates multi-species, multi-fleet and uncertainty as well as profitability, food production, and demographic growth. It is calibrated over the period 2006–2010 using monthly catch and effort data from the French Guiana's coastal fishery, involving thirteen species and four fleets. Using projections at the horizon 2040, different management strategies and scenarios are compared from a viability viewpoint, thus accounting for biodiversity preservation, fleet profitability and food security. The analysis shows that under certain...
Tipo: Text Palavras-chave: Small-scale fishery; Biodiversity; Sustainability; Profitability; Food security; Multi-species; Multi-fleet; Stochasticity; Viability; Scenario.
Ano: 2015 URL: http://archimer.ifremer.fr/doc/00276/38732/37310.pdf
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Dominance of individual plant species is more important than diversity in explaining plant biomass in the forest understorey ArchiMer
Wasof, Safaa; Lenoir, Jonathan; Hattab, Tarek; Jamoneau, Aurelien; Gallet-moron, Emilie; Ampoorter, Evy; Saguez, Robert; Bennsadek, Lamine; Bertrand, Romain; Valdes, Alicia; Verheyen, Kris; Decocq, Guillaume.
Questions How does plant community diversity influence variation in plant biomass? There are two competing hypotheses: the ‘biomass‐ratio hypothesis’, where biomass is influenced by the abundance and traits of the most dominant species, and the ‘diversity hypothesis’, where the diversity of organisms influences biomass through mechanisms such as niche complementarity. However, no studies have tested which one of these two hypotheses better explains the variation in plant biomass in the forest understorey. Location Temperate deciduous forests in Northern France. Methods For the forest understorey, we assessed species diversity and biomass as well as soil and light conditions in 133 forest plots of 100m² each. Using mixed‐effect models and after controlling...
Tipo: Text Palavras-chave: Biodiversity; Biomass; Biomass ratio hypothesis; Forest understorey; Functional diversity; Ivy; Phylogeny; Production.
Ano: 2018 URL: https://archimer.ifremer.fr/doc/00433/54441/55799.pdf
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Les observations de poissons tropicaux et le réchauffement des eaux dans l'Atlantique européen ArchiMer
Quero, Jean-claude; Dubuit, Marie-henriette; Vayne, Jean-jacques.
A recapitulation of the records of tropical fishes from European Atlantic waters shows that 67.6 % were fishes caught from the upper slope, between approximately 200 and 600 m; 19.8 % were fishes caught from the continental shelf; and 13.5 % were specimens caught from the middle slope, between 700 and 1 300 m. Since 1963, the upper slope species have made regular northward range extensions off of south Portugal to north-western Ireland (about 55 degrees 30' N), more and less rapidly, about 30 years for Cyttopsis roseus and only 6 years for Sphoeroides pachygaster. The continental shelf species, observed from 1969 but mostly from 1981, have a northward range to south-eastern Ireland (about 52 degrees N), but 65.2 % of them have been caught off the south of...
Tipo: Text Palavras-chave: European Atlantic; Warming; Tropical fishes; Biodiversity.
Ano: 1998 URL: http://archimer.ifremer.fr/doc/1998/publication-853.pdf
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First report of the family Zelinkaderidae (Kinorhyncha: Cyclorhagida) for the Caribbean Sea, with the description of a new species of Triodontoderes Sørensen and Rho, 2009 and an identification key for the family ArchiMer
Cepeda, Diego; Sanchez, Nuria; Pardos, Fernando.
A new species of Kinorhyncha, Triodontoderes lagahoo sp. nov., is described from Tobago Island, Caribbean Sea (western Atlantic Ocean) from a coastal, sandy habitat using both light and scanning electron microscopy. The species is characterized by the presence of middorsal acicular spines on segments 1–11 (that on segment 10 crenulated in males), laterodorsal crenulated spines on segment 10 only in males, lateroventral acicular spines on segments 3–4 and 6–8 (lateroventral spines also on segment 10 in females), lateroventral cuspidate spines on segments 5 and 9, lateral accessory acicular spines on segments 5 and 9, lateral accessory cuspidate spines on segment 8, ventrolateral acicular spines on segment 2 and ventrolateral cuspidate spines on segment 2....
Tipo: Text Palavras-chave: Kinorhynchs; Biodiversity; Meiofauna; Morphology; Taxonomy; Triodontoderes lagahoo sp. nov..
Ano: 2019 URL: https://archimer.ifremer.fr/doc/00502/61325/64897.pdf
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Setaphyes elenae sp. nov., a new species of mud dragon (Kinorhyncha: Allomalorhagida) from Skagerrak (north-eastern Atlantic Ocean) ArchiMer
Cepeda, Diego; González-casarrubios, Alberto; Sánchez, Nuria; Pardos, Fernando.
Meiofauna sampling in the proximity of Syd-Hällsö Island (Strömstad, Sweden) revealed a new species of Kinorhyncha from the Skagerrak. The species, Setaphyes elenae sp. nov., is distinguished from its congeners by the arrangement of the middorsal cuticular specializations (it has shortened, distally rounded middorsal processes on segments 1 and 9 and middorsal elevations throughout segments 2–8), as well as by the presence of paired laterodorsal setae on segments 3, 5, 7 and 9 and ventromedial setae on segments 3, 5 and 7 in both males and females. The finding of a new species from the northeastern Atlantic Ocean, provides new valuable information for the recently established genus in the Allomalorhagida.
Tipo: Text Palavras-chave: Meiofauna; Taxonomy; Scalidophora; Biodiversity; Invertebrates..
Ano: 2020 URL: https://archimer.ifremer.fr/doc/00627/73912/73248.pdf
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Unexplored Refugia with High Cover of Scleractinian Leptoseris spp. and Hydrocorals Stylaster flabelliformis at Lower Mesophotic Depths (75–100 m) on Lava Flows at Reunion Island (Southwestern Indian Ocean) ArchiMer
Hoarau, Ludovic; Rouzé, Héloïse; Boissin, Émilie; Gravier-bonnet, Nicole; Plantard, Patrick; Loisil, Camille; Bigot, Lionel; Chabanet, Pascale; Labarrère, Priscille; Penin, Lucie; Adjeroud, Mehdi; Mulochau, Thierry.
Tipo: Text Palavras-chave: Mesophotic coral ecosystem (MCEs); Reunion Island; Lower mesophotic zone; Scleractinian; Hydrocoral; Refugia; Biodiversity; Southwestern Indian Ocean.
Ano: 2021 URL: https://archimer.ifremer.fr/doc/00686/79841/82660.pdf
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The COVID-19 pandemic and global environmental change: emerging research needs ArchiMer
Barouki, Robert; Kogevinas, Manolis; Audouze, Karine; Belesova, Kristine; Bergman, Ake; Birnbaum, Linda; Boekhold, Sandra; Denys, Sebastien; Desseille, Celine; Drakvik, Elina; Frumkin, Howard; Garric, Jeanne; Destoumieux-garzon, Delphine; Haines, Andrew; Huss, Anke; Jensen, Genon; Karakitsios, Spyros; Klanova, Jana; Koskela, Iida-maria; Laden, Francine; Marano, Francelyne; Franziska Matthies-wiesler, Eva; Morris, George; Nowacki, Julia; Paloniemi, Riikka; Pearce, Neil; Peters, Annette; Rekola, Aino; Sarigiannis, Denis; Šebková, Katerina; Slama, Remy; Staatsen, Brigit; Tonne, Cathryn; Vermeulen, Roel; Vineis, Paolo.
The outbreak of COVID-19 raised numerous questions on the interactions between the occurrence of new infections, the environment, climate and health. The European Union requested the H2020 HERA project which aims at setting priorities in research on environment, climate and health, to identify relevant research needs regarding Covid-19. The emergence and spread of SARS-CoV-2 appears to be related to urbanization, habitat destruction, live animal trade, intensive livestock farming and global travel. The contribution of climate and air pollution requires additional studies. Importantly, the severity of COVID-19 depends on the interactions between the viral infection, ageing and chronic diseases such as metabolic, respiratory and cardiovascular diseases and...
Tipo: Text Palavras-chave: SARS-COV-2; Biodiversity; Urbanization; Climate; Chemicals; Transformational change.
Ano: 2021 URL: https://archimer.ifremer.fr/doc/00659/77146/78471.pdf
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Exopolysaccharides produced by marine bacteria and their applications as glycosaminoglycan-like molecules ArchiMer
Delbarre-ladrat, Christine; Sinquin, Corinne; Lebellenger, Lou; Zykwinska, Agata; Colliec-jouault, Sylvia.
Although polysaccharides are ubiquitous and the most abundant renewable bio-components, their studies, covered by the glycochemistry and glycobiology fields, remain a challenge due to their high molecular diversity and complexity. Polysaccharides are industrially used in food products; human therapeutics fall into a more recent research field and pharmaceutical industry is looking for more and more molecules with enhanced activities. Glycosaminoglycans (GAGs) found in animal tissues play a critical role in cellular physiological and pathological processes as they bind many cellular components. Therefore, they present a great potential for the design and preparation of therapeutic drugs. On the other hand, microorganisms producing exopolysaccharides (EPS)...
Tipo: Text Palavras-chave: Marine-derivedpolysaccharide; Biodiversity; Biologicalactivity; Structure; Modification; GAG-mimetic; Biosynthesis.
Ano: 2014 URL: https://archimer.ifremer.fr/doc/00241/35250/33764.pdf
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Intérêt biogéographique de la côte basque rocheuse ArchiMer
De Casamajor, Marie-noelle; Lalanne, Yann.
During recent decades, works on rocky shore biodiversity have been multiplied in the southern part of the Bay of Biscay and more precisely on intertidal and subtidal area were communities present a great interest. Necessity of conservation of coastal habitats and their communities and a growing pressure on coastal environments explain awareness of services provided by these ecosystems. Those communities are very sensitive to water quality change. Moreover, since the beginning of the XXI century various European directives require a good ecological status of coastal waters and conservation of their communities : Water Framework Directive (WFD), Marine Strategy Framework Directive (MSFD) and conservation of habitats with Directive Habitat Fauna and Flora...
Tipo: Text Palavras-chave: Biodiversité; Substrats rocheux; Côte basque; Changement climatique; Golfe de Gascogne.; Biodiversity; Rocky shore; Basque coast; Climate change; Bay of Biscay..
Ano: 2016 URL: http://archimer.ifremer.fr/doc/00347/45781/45426.pdf
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Can fish morphology determine its diet? ArchiMer
Chambord, Sophie; Villanueva, Ching-maria; Ernande, Bruno; Lefebvre, Sébastien.
Biodiversity is a concept that covers a lot of issues that can elucidate diversity-related functional roles to understand ecological ecosystem functioning. Biodiversity can shape ecosystem structure and functioning especially if we focus on predator-prey interactions. Moreover, the mechanisms governing prey-predator relationships will shape the emergent food web structure just as individuals’ characteristics determine the emergent demographic structure of a population. We determined the trophic ecology of fish species in the eastern English Channel by combining gut-content and geomorphometric analyses. We inferred the mechanisms of resource utilisation by Atlantic seabass and plaice by coupling measured geomorphometric determinants of prey-predator...
Tipo: Text Palavras-chave: Biodiversity; Predator-prey interaction; Eastern English Channel Stomach content analysis Geomorphometry Fish.
Ano: 2010 URL: http://archimer.ifremer.fr/doc/00143/25416/23567.pdf
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Knowledge for Society. How to limit impacts on marine biodiversity ? ArchiMer
Goulletquer, Philippe.
At the present time, it has been determined that the average fish consumption per inhabitant should double by the year 2030, as it did between 1973 and 2003. Hence, what should we do to better preserve (if not increase) fish stocks that are constantly decreasing? How should aquaculture be considered? Can it meet this growing demand, and if so, what will be its environmental impact? How could developing countries ask aquaculture companies to take care of the extra costs linked to a sustainable aquaculture production?
Tipo: Text Palavras-chave: Impact; Ecosystem; Biodiversity.
Ano: 2008 URL: http://archimer.ifremer.fr/doc/2008/acte-6209.pdf
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The pilot project "Patterns and processes of the ecosystems of the northern Mid-Atlantic": aims, strategy and status ArchiMer
Bergstad, Oa; Godo, Or.
The Mid-Atlantic Ridge is the target of an emerging international ecosystem study under the Census of marine life programme. This pilot project shall gather new knowledge on biodiversity, distribution patterns, and ecological processes, and the overriding aim is "to describe and understand the patterns of distribution, abundance and trophic relationships of the organisms inhabiting the mid-oceanic North Atlantic, and identify and model ecological processes that cause variability in these patterns". The project will focus on pelagic, benthopelagic and epibenthic macrofauna, and analyse distribution and abundance patterns in relation to the abiotic and biotic environment, as well as trophic relationships and life history strategies. Fish, crustaceans,...
Tipo: Text Palavras-chave: Médio-atlantique; Ride; Macrofaune; Biodiversité; Mid-atlantic; Ridge; Macrofauna; Biodiversity.
Ano: 2002 URL: http://archimer.ifremer.fr/doc/00322/43305/43041.pdf
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Mesoscale spatio-temporal dynamics of demersal assemblages of the Eastern Ionian Sea in relationship with natural and fisheries factors ArchiMer
Tsagarakis, Konstantinos; Mytilineou, Chryssi; Haralabous, John; Lorance, Pascal; Politou, Chrissi-yianna; Dokos, John.
Data from the MEDITS bottom trawl surveys in the Eastern Ionian Sea, covering a depth range of 28 to 845 m were analysed for the period 1998-2008. For each trawling location, environmental and geographical parameters were recorded, while biomass, abundance, biodiversity and size-based metrics were estimated for the total megafaunal community, as well as for four taxonomic sub-communities (Osteichthyes, Chondrichthyes, Crustacea and Cephalopoda) which were expected to respond differently to environmental changes and fishing. In addition, biomass and abundance of ten species selected based on commercial interest, depth range and life history traits were explored, with particular emphasis on deep-sea species. Fishing effort data collected during the study...
Tipo: Text Palavras-chave: Biodiversity; Fisheries impacts; Demersal community; Survey indicators; Temporal trends; Mediterranean Sea.
Ano: 2013 URL: http://archimer.ifremer.fr/doc/00176/28761/27230.pdf
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Eulimacrostoma gen. nov., a new genus of Eulimidae (Gastropoda, Caenogastropoda) with description of a new species and reevaluation of other western Atlantic species ArchiMer
Santos De Souza, Leonardo; Dias Pimenta, Alexandre.
A new genus and a new species of Eulimidae are described based on the shell morphology and on the host-parasite relationship of the type species. Eulimacrostoma microsculpturata Souza & Pimenta gen. nov. and sp. nov. parasitizes a starfish of the genus Luidia and has an elongated, conical, straight, or slightly curved shell, a protoconch with a brownish spiral band and convex whorls, a peculiar large and broad aperture with a strongly protruding outer lip, and microsculpture of axial lines on the teleoconch. Four other species are included in the genus, all from the western Atlantic: Eulimacrostoma chascanon (Watson, 1883), comb. nov., Eulimacrostoma fusus (Dall, 1889), comb. nov., Eulimacrostoma lutescens (Simone, 2002), comb. nov., and Eulimacrostoma...
Tipo: Text Palavras-chave: Biodiversity; Micromolluscs; Parasitic snails shell morphology; Taxonomy; Vanikoroidea.
Ano: 2019 URL: https://archimer.ifremer.fr/doc/00508/61989/66102.pdf
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Atlas of modern dinoflagellate cyst distributions in the Black Sea Corridor: From Aegean to Aral Seas, including Marmara, Black, Azov and Caspian Seas ArchiMer
Mudie, Peta J.; Marret, Fabienne; Mertens, Kenneth; Shumilovskikh, Lyudmila; Leroy, Suzanne A. G..
We present the first comprehensive taxonomic and environmental study of dinoflagellate cysts in 185 surface sediment samples from the Black Sea Corridor (BSC) which is a series of marine basins extending from the Aegean to the Aral Seas (including Marmara, Black, Azov and Caspian Seas). For decades, these low-salinity, semi-enclosed or endorheic basins have experienced large-scale changes because of intensive agriculture and industrialisation, with consequent eutrophication and increased algal blooms. The BSC atlas data provide a baseline for improved understanding of linkages between surface water conditions and dinoflagellate cyst (dinocyst) distribution, diversity and morphological variations. By cross-reference to dinocyst occurrences in sediment cores...
Tipo: Text Palavras-chave: Phytoplankton; Harmful algae; Biodiversity; Paleoceanography; Surface samples.
Ano: 2017 URL: http://archimer.ifremer.fr/doc/00387/49824/50408.pdf
Registros recuperados: 786
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