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Registros recuperados: 404
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In memoriam Prof. Dr J.T. Wiebes (1931-1999), evolutionary biologist and systematic entomologist 16
Bruggen, A.C. van; Achterberg, C. van.
Born on 13 September 1931 in Rotterdam, Jacobus Theodorus [Koos] Wiebes read biology at Leiden University where he obtained his Ph.D. in 1963 on studies of Indo-Australian fig wasps. He started working on spiders (Lycosidae, Pisauridae) and beetles (Carabidae, Cetoniidae, Helodidae), but he earned his scientific reputation as a specialist in fig wasps (Hymenoptera: Agaonidae, Torymidae), their parasitoids and intricate host relationships (1961-1994: 89 papers). He served for many years on the staff of the Rijksmuseum van Natuurlijke Historie, Leiden (1955-1970, initially as assistant, later as curator of Coleoptera and as assistant director since 1965), to return as director of the newly merged national zoology and geology museums (ad interim 1982-1984,...
Tipo: Article / Letter to the editor Palavras-chave: Hymenoptera; Chalcidoidea; Agaonidae; Torymidae; Fig wasps; Figs; Co-evolution; Lepidoptera; Yponomeutidae; Yponomeuta; Ermine moths; Coleoptera; Carabidae; Cetoniidae; Helodidae; Arachnida; Lycosidae; Pisauridae; Evolutionary biology; Taxonomy; Phylogeny; Ecology; Biography; Bibliography; History of biology; Rijksmuseum van Natuurlijke Historie/Leiden-National Museum of Natural History/Leiden; 42.75.
Ano: 2000 URL: http://www.repository.naturalis.nl/record/216033
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Phaeoacremonium species diversity on woody hosts in the Western Cape Province of South Africa 16
Spies, C.F.J.; Moyo, P.; Halleen, F.; Mostert, L..
Nineteen Phaeoacremonium species are currently known in South Africa. These have been reported from grapevines, fruit trees, fynbos twig litter and arthropods. In other countries some of these Phaeoacremonium species are also known from hosts such as European olive, quince and willow that commonly occur in the Western Cape Province of South Africa, where most South African records of Phaeoacremonium have been made. The aim of this study was to investigate the species diversity and host-range of Phaeoacremonium in the Western Cape Province of South Africa by characterising 156 isolates collected from 29 woody hosts. Phylogenetic analyses of combined actin and beta-tubulin datasets allowed for the identification of 31 species among the 156 isolates,...
Tipo: Article / Letter to the editor Palavras-chave: Brown wood streaking; Decline disease; Phylogeny; Systematics; Togninia.
Ano: 2018 URL: http://www.repository.naturalis.nl/record/639190
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Molecular phylogenetic analyses reveal a close evolutionary relationship between Podosphaera (Erysiphales: Erysiphaceae) and its rosaceous hosts 16
Takamatsu, S.; Niinomi, S.; Harada, M.; Havrylenko, M..
Podosphaera is a genus of the powdery mildew fungi belonging to the tribe Cystotheceae of the Erysiphaceae. Among the host plants of Podosphaera, 86 % of hosts of the section Podosphaera and 57 % hosts of the subsection Sphaerotheca belong to the Rosaceae. In order to reconstruct the phylogeny of Podosphaera and to determine evolutionary relationships between Podosphaera and its host plants, we used 152 ITS sequences and 69 28S rDNA sequences of Podosphaera for phylogenetic analyses. As a result, Podosphaera was divided into two large clades: clade 1, consisting of the section Podosphaera on Prunus (P. tridactyla s.l.) and subsection Magnicellulatae; and clade 2, composed of the remaining member of section Podosphaera and subsection Sphaerotheca. Because...
Tipo: Article / Letter to the editor Palavras-chave: 28S rDNA; Evolution; ITS; Molecular clock; Phylogeny; Powdery mildew fungi; Rosaceae.
Ano: 2010 URL: http://www.repository.naturalis.nl/record/532391
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Families and genera of diaporthalean fungi associated with canker and dieback of tree hosts 16
Fan, X.L.; Bezerra, J.D.P.; Tian, C.M.; Crous, P.W..
In this study we accept 25 families in Diaporthales based on phylogenetic analyses using partial ITS, LSU, rpb2 and tef1-α gene sequences. Four different families associated with canker and dieback of tree hosts are morphologically treated and phylogenetically compared. These include three new families (Diaporthostomataceae, Pseudomelanconidaceae, Synnemasporellaceae), and one new genus, Dendrostoma (Erythrogloeaceae). Dendrostoma is newly described from Malus spectabilis, Osmanthus fragrans and Quercus acutissima having fusoid to cylindrical, bicellular ascospores, with three new species namely D. mali, D. osmanthi and D. quercinum. Diaporthostomataceae is characterised by conical and discrete perithecia with bicellular, fusoid ascospores on branches of...
Tipo: Article / Letter to the editor Palavras-chave: Ascomycota; Phylogeny; Sordariomycetes; Taxonomy.
Ano: 2018 URL: http://www.repository.naturalis.nl/record/643333
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Phylogeny and taxonomy of obscure genera of microfungi 16
Crous, P.W.; Braun, U.; Wingfield, M.J.; Wood, A.R.; Shin, H.D.; Summerell, B.A.; Alfenas, A.C.; Cumagun, C.J.R.; Groenewald, J.Z..
The recently generated molecular phylogeny for the kingdom Fungi, on which a new classification scheme is based, still suffers from an under representation of numerous apparently asexual genera of microfungi. In an attempt to populate the Fungal Tree of Life, fresh samples of 10 obscure genera of hyphomycetes were collected. These fungi were subsequently established in culture, and subjected to DNA sequence analysis of the ITS and LSU nrRNA genes to resolve species and generic questions related to these obscure genera. Brycekendrickomyces (Herpotrichiellaceae) is introduced as a new genus similar to, but distinct from Haplographium and Lauriomyces. Chalastospora is shown to be a genus in the Pleosporales, with two new species, C. ellipsoidea and C....
Tipo: Article / Letter to the editor Palavras-chave: Brycekendrickomyces; Chalastospora; Cyphellophora; Dictyosporium; Edenia; Phylogeny; Taxonomy; Thedgonia; Trochophora; Verrucisporota; Vonarxia; Xenostigmina.
Ano: 2009 URL: http://www.repository.naturalis.nl/record/531925
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Phylogeny and biogeography of midwife toads (Alytes, Discoglossidae): a reappraisal 16
Altaba, Cristian R..
The allozyme data base of Arntzen & García-París (1995) on midwife toads (Alytes, Discoglossidae) is reanalysed considering each locus as a discrete character. The phylogeny thus inferred differs from the one obtained with genetic distances in the position of A. dickhilleni from the Betic region – it appears that its sister species is the widespread A. obstetricans, not the Mallorcan endemic A. muletensis. This phylogenetic hypothesis agrees with the taxonomic treatment of the genus based on morphology. A testable biogeographic hypothesis is proposed to account for the diversification of midwife toads in Iberia and the Balearics. The postulated underlying geological changes were the spread of inland saline lakes that divided Iberia (16 mY B.P.), the...
Tipo: Article / Letter to the editor Palavras-chave: Alytes; Midwife toads; Taxonomy; Phylogeny; Biogeography; Western Mediterranean; Iberia; Balearic Islands.
Ano: 1997 URL: http://www.repository.naturalis.nl/record/504192
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Novel Curvularia species from clinical specimens 16
Madrid, H.; da Cunha, K.C.; Gené, J.; Dijksterhuis, J.; Cano, J.; Sutton, D.A.; Guarro, J.; Crous, P.W..
The fungal genus Curvularia includes numerous plant pathogens and some emerging opportunistic pathogens of humans. In a previous study we used morphology and sequences of the nuclear ribosomal internal transcribed spacer region (ITS) and the glyceraldehyde-3-phosphate dehydrogenase (gpd) gene to identify species within a set of 99 clinical Curvularia isolates from the USA. Seventy-two isolates could be identified while the remaining 27 isolates belonged in three unclassified clades that were tentatively labelled Curvularia sp. I, II and III. In the present study, we further assess the taxonomic placement of these isolates using sequences of ITS, gpd, the large subunit rDNA, and the second largest subunit of RNA polymerase II. DNA sequence comparisons with a...
Tipo: Article / Letter to the editor Palavras-chave: Bipolaris; Curvularia; Gpd; ITS; LSU; Phylogeny; RPB2; Systematics.
Ano: 2014 URL: http://www.repository.naturalis.nl/record/532180
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New penicillin-producing Penicillium species and an overview of section Chrysogena 16
Houbraken, J.; Frisvad, J.C.; Seifert, K.A.; Overy, D.P.; Tuthill, D.M.; Valdez, J.G.; Samson, R.A..
Species classified in Penicillium sect. Chrysogena are primary soil-borne and the most well-known members are P. chrysogenum and P. nalgiovense. Penicillium chrysogenum has received much attention because of its role in the production on penicillin and as a contaminant of indoor environments and various food and feedstuffs. Another biotechnologically important species is P. nalgiovense, which is used as a fungal starter culture for the production of fermented meat products. Previous taxonomic studies often had conflicting species circumscriptions. Here, we present a multigene analysis, combined with phenotypic characters and extrolite data, demonstrating that sect. Chrysogena consists of 18 species. Six of these are newly described here (P. allii-sativi,...
Tipo: Article / Letter to the editor Palavras-chave: Fleming; P. chrysogenum; P. rubens; Phylogeny; Taxonomy.
Ano: 2012 URL: http://www.repository.naturalis.nl/record/532320
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A new classification of the Xanthoidea sensu lato (Crustacea: Decapoda: Brachyura) based on phylogenetic analysis and traditional systematics and evaluation of all fossil Xanthoidea sensu lato 16
Karasawa, H.; Schweitzer, C.E..
A phylogenetic analysis was conducted including representatives from all recognized extant and extinct families of the Xanthoidea sensu lato, resulting in one new family, Hypothalassiidae. Four xanthoid families are elevated to superfamily status, resulting in Carpilioidea, Pilumnoidoidea, Eriphioidea, Progeryonoidea, and Goneplacoidea, and numerous subfamilies are elevated to family status. The Mathildellidae is moved from the Goneplacidae to the Portunoidea. Diagnoses for all superfamilies and families discussed herein are provided, embracing characters typically used by biologists as well as readily fossilized features of the dorsal carapace, sternum, abdomen, and chelipeds. All genera known from the fossil record at one time referred to the Xanthidae...
Tipo: Article / Letter to the editor Palavras-chave: Crustacea; Decapoda; Brachyura; Xanthoidea; Portunidae; Systematics; Phylogeny; 42.74.
Ano: 2006 URL: http://www.repository.naturalis.nl/record/210768
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Phylogeny and taxonomy of the genus Gliocephalotrichum 16
Lombard, L.; Serrato-Diaz, L.M.; Cheewangkoon, R.; French-Monar, R.D.; Decock, C.; Crous, P.W..
Species in the genus Gliocephalotrichum (= Leuconectria) (Hypocreales, Nectriaceae) are soilborne fungi, associated with post-harvest fruit spoilage of several important tropical fruit crops. Contemporary taxonomic studies of these fungi have relied on morphology and DNA sequence comparisons of the internal transcribed spacer region of the nuclear rDNA (ITS) and the β-tubulin gene regions. Employing DNA sequence data from four loci (β-tubulin, histone H3, ITS, and translation elongation factor 1-alpha) and morphological comparisons, the taxonomic status of the genus Gliocephalotrichum was re-evaluated. As a result five species are newly described, namely G. humicola (Taiwan, soil), G. mexicanum (rambutan fruit from Mexico), G. nephelii (rambutan fruit from...
Tipo: Article / Letter to the editor Palavras-chave: Gliocephalotrichum; Leuconectria; Phylogeny; Taxonomy.
Ano: 2014 URL: http://www.repository.naturalis.nl/record/532119
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Vertebral number is highly evolvable in salamanders and newts (family Salamandridae) and variably associated with climatic parameters 16
Arntzen, J.W.; Beukema, W.; Galis, F.; Ivanović, A..
In vertebrates, the relative proportion of the number of trunk and caudal vertebrae is an important determinant of body shape. While among amphibians frogs and toads show low variation in vertebrae numbers, in salamanders the numbers of trunk and caudal vertebrae vary widely, giving rise to phenotypes in the range from short-bodied and long-tailed to long-bodied and short-tailed. We analysed vertebral numbers in the family Salamandridae in a phylogenetic context and calculated the relationship between vertebral changes and changes in climate and other environmental parameters. A significant association was found between morphological change with precipitation and temperature. However, annual precipitation affected the two main groups of salamandrid...
Tipo: Article / Letter to the editor Palavras-chave: Ancestral character states; Body shape; Climatic niche; Comparative method; Phylogeny; Vertebral column; 42.82.
Ano: 2015 URL: http://www.repository.naturalis.nl/record/533923
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Phylogenetic and systematic position of Sesarma rubripes Rathbun, 1897 (Brachyura: Grapsidae) 16
Niem, V.H..
The American grapsid crab Sesarma rubripes, classified as Metasesarma rubripes by Rathbun (1918), was compared with M. rousseauxi, the type species of Metasesarma, and was found to be different in a number of characters. On the other hand, S. rubripes is very close to those species of American Sesarma that are considered to be members of the subgenus Chiromantes. The characters common to S. rubripes and the American Chiromantes can be interpreted as synapomorphies by means of an outgroup comparison. Aratus pisonii and the West African Sesarma elegans are further members of the group in question and both share special derived characters with S. rubripes. As a consequence, S. rubripes should be returned to the genus Sesarma. It is recommended, however, to...
Tipo: Article / Letter to the editor Palavras-chave: Metasesarma; Aratus; Sesarma; Grapsidae; Sesarminae; Phylogeny; 42.74.
Ano: 1993 URL: http://www.repository.naturalis.nl/record/318206
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Molecular and phenotypic characterisation of novel Phaeoacremonium species isolated from esca diseased grapevines 16
Essakhi, S.; Mugnai, L.; Crous, P.W.; Groenewald, J.Z.; Surico, G..
Petri disease and esca are very destructive grapevine decline diseases that occur in most countries where grapevine (Vitis vinifera) is cultivated. Phaeoacremonium species are among the principal hyphomycetes associated with symptoms of the two diseases, producing a range of enzymes and phytotoxic metabolites. The present study compared the phylogeny of a global collection of 118 Phaeoacremonium isolates from grapevines, in order to gain a better understanding of their involvement in Petri disease and esca. Phylogenetic analyses of combined DNA sequence datasets of actin and β-tubulin genes revealed the presence of 13 species of Phaeoacremonium solated from esca diseased grapevines. Phaeoacremonium aleophilum was the most frequently isolated species with...
Tipo: Article / Letter to the editor Palavras-chave: Actin; Β-tubulin; Esca; Morphology; Phaeoacremonium; Phylogeny.
Ano: 2008 URL: http://www.repository.naturalis.nl/record/532098
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When forms meet genes: revision of the scleractinian genera Micromussa and Homophyllia (Lobophylliidae) with a description of two new species and one new genus 16
Arrigoni, R.; Benzoni Danwei Huang, Hironobu Fukami, Chaolun Allen Chen, Michael L. Berumen, Mia Hoogenboom, Damian P. Thomson, Bert W. Hoeksema, Ann F. Budd, Yuna Zayasu, Tullia I. Terraneo, Yuko F. Kitano, Andrew H. Baird, F.; Huang, D.; Fukami, H.; Chen, C.A.; Berumen, M.L.; Hoogenboom, M.; Thomson, D.P.; Hoeksema,, B.W.; Budd, A.F.; Zayasu, Y.; Terraneo, T.I.; Kitano, Y.F.; Baird, A.H..
The scleractinian family Lobophylliidae is undergoing a major taxonomic revision thanks to the combination of molecular and morphological data. In this study, we investigate the evolutionary relationships and the macro- and micromorphology of six nominal coral species belonging to two of the nine molecular clades of the Lobophylliidae, clades A and B, and of Symphyllia wilsoni, a lobophylliid species analyzed from a molecular point of view for the first time. Sequence data from mitochondrial DNA (COI and the intergenic spacer between COI and l-rRNA), and nuclear DNA (histone H3 and ITS region) are used to generate robust molecular phylogenies and a median-joining haplotype network. Molecular results are strongly in agreement with detailed observations of...
Tipo: Article / Letter to the editor Palavras-chave: Coral; Evolution; Phylogeny; Systematics; Taxonomy.
Ano: 2016 URL: http://www.repository.naturalis.nl/record/619236
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Phylogeny of Cyperaceae based on DNA sequence data - a new rbcL analysis 16
Simpson, D.A.; Muthama Muasya, A.; Alves, M.V.; Bruhl, J.J.; Dhooge, S.; Chase, M.W.; Furness, C.A.; Ghamkhar, K.; Goetghebeur, P.; Hodkinson, T.D.; Marchant, A.D.; Reznicek, A.A.; Nieuwborg, R.; Roalson, E.H.; Smets, E.; Starr, J.R.; Thomas, W.W.; Wilson, K.L.; Zhang, X..
Since the Monocots II meeting in 1998, significant new data have been published that enhance our systematic knowledge of Cyperaceae. Phylogenetic studies in the family have also progressed steadily. For this study, a parsimony analysis was carried out using all rbcL sequences currently available for Cyperaceae, including data for two new genera. One of the four subfamilies (Caricoideae) and seven of the 14 tribes (Bisboeckelereae, Cariceae, Cryptangieae, Dulichieae, Eleocharideae, Sclerieae, Trilepideae) are monophyletic. Subfamily Mapanioideae and tribe Chrysitricheae are monophyletic if, as the evidence suggests, Hellmuthia is considered a member of Cypereae. Some other features of our analysis include: well-supported Trilepideae and...
Tipo: Article / Letter to the editor Palavras-chave: Cyperaceae; Monocotyledons; Phylogeny; RbcL; Sequence; 42.48.
Ano: 2007 URL: http://www.repository.naturalis.nl/record/414071
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Phylogenetic reassessment of Nigrospora: Ubiquitous endophytes, plant and human pathogens 16
Wang, M.; Liu, F.; Crous, P.W.; Cai, L..
Species of Nigrospora commonly occur as plant pathogens, endophytes or saprobes, and have been shown to be extremely interesting for the discovery of novel metabolites. The familial placement, as well as phylogenetic relationships among Nigrospora species remain ambiguous. In this study, Nigrospora (= Khusia) is confirmed as a monophyletic genus belonging to Apiosporaceae (Xylariales), based on a phylogeny inferred from LSU sequence data. A multi-locus phylogeny based on ITS, TEF1-α and TUB2, in conjunction with morphological characters, host associations, and ecological data was employed for species delimitation in Nigrospora, as well as identification of 165 recently collected isolates from China, and three from Europe. In total 13 novelties are proposed...
Tipo: Article / Letter to the editor Palavras-chave: Apiosporaceae; Ascomycota; Phylogeny; Species delimitation; Systematics.
Ano: 2017 URL: http://www.repository.naturalis.nl/record/635431
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Historical biogeography of Fungia (Pleuractis) spp. (Scleractinia: Fungiidae), including a new species from the Seychelles 16
Hoeksema, B.W..
An update of the phylogeny and biogeography of mushroom coral species belonging to Fungia (Pleuractis) is presented. Among the five species of this monophyletic group, one is described as new to science. This species, Fungia seychellensis spec, nov., was discovered during the Netherlands Seychelles Expedition (1992-1993) in the framework of the Netherlands Indian Ocean Programme 1990/1995.
Tipo: Article / Letter to the editor Palavras-chave: Scleractinia; Fungiidae; Fungia; Pleuractis; Mushroom corals; New species; Phylogeny; Biogeography; Seychelles; 42.72.
Ano: 1993 URL: http://www.repository.naturalis.nl/record/319240
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Immature stages and phylogenetic importance of Astrapaeus, a rove beetle genus of puzzling systematic position (Coleoptera, Staphylinidae, Staphylinini) 16
Pietrykowska-Tudruj, E.; Staniec, B.; Wojas, T.; Alexey, A..
For the first time eggs, larvae and pupae obtained by rearing are described for Astrapaeus, a monotypic West Palearctic rove beetle genus of a puzzling phylogenetic position within the megadiverse tribe Staphylinini. Morphology of the immature stages of Astrapaeus ulmi is compared to that of other members of the tribe and discussed in a phylogenetic context. Contrary to conventional systematics and in accordance with recently developed phylogenetic hypotheses based on morphology of adults, larval morphology supports the non-Quediina affiliation of Astrapaeus. Eggs and pupae provided fewer characters with putative phylogenetic signal. Under laboratory conditions, a peculiar preference for isopod prey was observed for A. ulmi. However, this could not be...
Tipo: Article / Letter to the editor Palavras-chave: Egg; Feeding preference; Larva; Life cycle; Morphology; Phylogeny; Pupa; 42.75; 42.64.
Ano: 2014 URL: http://www.repository.naturalis.nl/record/472282
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Phytophthora multivora sp. nov., a new species recovered from declining Eucalyptus, Banksia, Agonis and other plant species in Western Australia 16
Scott, P.M.; Burgess, T.I.; Barber, P.A.; Shearer, B.L.; Stukely, M.J.C.; Hardy, G.E.St.J.; Jung, T..
A new Phytophthora species, isolated from rhizosphere soil of declining or dead trees of Eucalyptus gomphocephala, E. marginata, Agonis flexuosa, and another 13 plant species, and from fine roots of E. marginata and collar lesions of Banksia attenuata in Western Australia, is described as Phytophthora multivora sp. nov. It is homothallic and produces semipapillate sporangia, smooth-walled oogonia containing thick-walled oospores, and paragynous antheridia. Although morphologically similar to P. citricola, phylogenetic analyses of the ITS and cox1 gene regions demonstrate that P. multivora is unique. Phytophthora multivora is pathogenic to bark and cambium of E. gomphocephala and E. marginata and is believed to be involved in the decline syndrome of both...
Tipo: Article / Letter to the editor Palavras-chave: Decline; Dieback; Forest; Jarrah; Phylogeny; Phytophthora citricola; Tuart.
Ano: 2009 URL: http://www.repository.naturalis.nl/record/531947
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Heterochrony, generic distinction and phylogeny in the family Hydractiniidae (Hydrozoa: Cnidaria) 16
Boero, F.; Bouillon, J.; Piraino, S..
The taxonomy of Hydractinia, Stylactaria and Podocoryna is discussed and the three genera are merged into Hydractinia since their diagnostic characters are liable to lead to polyphyly and paraphyly, due to repeated episodes of medusa reduction via heterochrony (paedomorphosis). The phylogeny of the Hydractiniidae is reconstructed by using two outgroups, Clava and Cytaeis, both having some characters in common with the Hydractiniidae. The resulting phylogenetic trees agree in identifying affinities among Hydractinia, Kinetocodium and Hydrocorella, all with polymorphic colonies with gastrozooids having oral tentacles. The position of Clavactinia (characterized by gastrozooids with widely scattered tentacles) is at the root of the tree if Clava is the...
Tipo: Article / Letter to the editor Palavras-chave: Cnidaria; Hydrozoa; Anthomedusae; Phylogeny; Life cycle; Classification; Heterochrony; Paedomorphosis.; 42.72.
Ano: 1998 URL: http://www.repository.naturalis.nl/record/317695
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