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Molecular phylogeny and phylogeography of the Cuban cave-fishes of the genus Lucifuga: Evidence for cryptic allopatric diversity OceanDocs
García-Machado, E.; Hernández, D.; García-Debrás, A.; Chevalier-Monteagudo, P.; Metcalfe, C.; Bernatchez, L.; Casane, D..
Underground environments are increasingly recognized as reservoirs of faunal diversity. Extreme environmental conditions and limited dispersal ability of underground organisms have been acknowledged as important factors promoting divergence between species and conspecific populations. However, in many instances, there is no correlation between genetic divergence and morphological differentiation. Lucifuga Poey is a stygobiotic fish genus that lives in Cuban and Bahamian caves. In Cuba, it offers a unique opportunity to study the influence of habitat fragmentation on the genetic divergence of stygobiotic species and populations. The genus includes four species and one morphological variant that have contrasting geographical distributions. In this study, we...
Tipo: Journal Contribution Palavras-chave: Fish; Phylogeny.
Ano: 2011 URL: http://hdl.handle.net/1834/4138
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Mise à jour de la nomenclature des démosponges de Tunisie OceanDocs
Ben Mustapha, K.; Chaouch, M.; Dhahbi, L..
التطورات السريعة للتأريخ العرقي للإسفنج ، كذاك الأعمال الحديثة التي أحدثت في البلاد التونسية في علم التصنيف و علم البيئة لهذه المجموعة قد شجعتنا لإعادة النظر في التسميات. هذا التجديد مكننا أيضا اعتبار الإضافات و التسجيلات الأخيرة.
Tipo: Journal Contribution Palavras-chave: Porifera; Ecology; Phylogeny; Sponges; Taxonomy; Terminology; Taxonomy; Terminology; Ecology; Phylogeny; Sponges; Http://aims.fao.org/aos/agrovoc/c_7631; Http://aims.fao.org/aos/agrovoc/c_24907; Http://aims.fao.org/aos/agrovoc/c_2467; Http://aims.fao.org/aos/agrovoc/c_13325; Http://aims.fao.org/aos/agrovoc/c_7321.
Ano: 2007 URL: http://hdl.handle.net/1834/4283
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Taxonomic revision of the recent and Holocene representatives of the Family Darwinulidae (Crustacea, Ostracoda), with a description of three new genera OMA
Rossetti, G.; Martens, K..
The Darwinulidae, the only surviving family of the superfamily Darwinuloidea, are revised and 28 extant species are retained. Twenty-six species (2 of which as yet formally undescribed) are allocated to 5 genera, 3 of which are here described as new; 2 species have an uncertain position within the family because of their insufficient original description are listed here as <i>species inquirendae</i>. New genera are characterised on combinations of soft part and valve characters, but the chaetotaxy of the limbs seems most conservative and most suitable the identification of genera. <i>Darwinula</i> s.s. and <i>Microdarwinula</i> are, with regard to recent species, monospecific.<i>Alicenula</i> nov. gen. is...
Tipo: Info:eu-repo/semantics/article Palavras-chave: Animal fossils; Holocene; New genera; Phylogeny; Taxonomy; Alicenula; Darwinulidae; Ostracoda; Penthesilenula; Vestalenula.
Ano: 1998 URL: http://www.vliz.be/imisdocs/publications/266663.pdf
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The anatomy and ultrastructure of the proboscis in <i>Zonorhynchus</i>-species and implications for phylogenetic relationships within the Eukalyptorhynchia Meixner, 1928 (Platyhelminthes, Rhabdocoela) OMA
De Vocht, A.J.-P.; Schockaert, E.R..
The ultrastructural morphology of the proboscis in species of the genus <i>Zonorhynchus</i> Karling, 1952 is investigated. The proboscis epithelia are organized in four belts. The apical cone epithelium has intra-epithelial nuclei, and the distal belt of the sheath epithelium is formed by numerous cells lacking a distinct pattern. Multiciliary receptors are lacking. The diversity in ultrastructural data on the proboscis is used to elucidate the phylogenetic relationships within the Cicerinidae and Eukalyptorhynchia. A bipartite cone epithelium as found in <i>Zonorhynchus</i>-species is a common feature for all eukalyptorhynch species investigated. A syncytial basal cone epithelium is a synapomorphic character for all species except...
Tipo: Info:eu-repo/semantics/article Palavras-chave: Phylogeny; Proboscis; Ultrastructure; Eukalyptorhynchia; Platyhelminthes; Rhabdocoela; Zonorhynchus.
Ano: 1999 URL: http://www.vliz.be/nl/open-marien-archief?module=ref&refid=1116
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A new species of Corydoras Lacépède (Siluriformes: Callichthyidae) from the Rio Tapajós basin and its phylogenetic implications Pap. Avulsos de Zool. (São Paulo)
Espíndola,Vinicius C.; Spencer,Marcelo R.S.; Rocha,Leandro R.; Britto,Marcelo R..
A new species of Corydoras is described from tributaries of the rio Arinos, rio Teles Pires and rio Preto, all in the rio Tapajós basin. The new species is a member of a group that includes 36 species with spots on the body. Within this group, the new species can be readily distinguished by having a smaller dorsal-fin spine than the first three subsequent soft dorsal-fin rays; pectoral, pelvic and anal fins hyaline; dorsal-fin interradial membrane hyaline; rounded spots on trunk restricted to dorsolateral body plates and dorsal portion of ventrolateral body plates, not reaching the base of pelvic and anal fins. The new species can be further distinguished from Corydoras xinguensis by having spots with diffuse edges, and from all other species of spotted...
Tipo: Info:eu-repo/semantics/article Palavras-chave: Corydoradinae; Neotropical; Phylogeny; Taxonomy; Biodiversity.
Ano: 2014 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S0031-10492014000300001
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Why biogeographical hypotheses need a well supported phylogenetic framework: a conceptual evaluation Pap. Avulsos de Zool. (São Paulo)
Santos,Charles Morphy D.; Amorim,Dalton S..
A growing number of biogeographical methods have attempted to describe formal means of reconstructing the biogeographical history of the organisms. Whatever the biogeographical method, however, the source of systematic information has to be well worked out. Taxonomic noise is sometimes a true impediment to properly deal with the complexity of life in its three-dimensional aspects, the threefold parallelism represented by form, space and time. This paper argues that historical systematics is a necessary basis for a historical biogeography. Organismal phylogenies or at least hypotheses of monophyly should be taken as the basis for the study of distribution patterns. Whenever a non-monophyletic taxon is misleadingly taken as monophyletic, erroneous...
Tipo: Info:eu-repo/semantics/article Palavras-chave: Biogeography; Cladistics; Conservation; Endemism; Monophyly; Phylogeny; Species.
Ano: 2007 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S0031-10492007000400001
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Two new Southern African Apatomyza Wiedemann (Diptera, Bombyliidae, Crocidiinae) with discussion on their phylogenetic position Pap. Avulsos de Zool. (São Paulo)
Lamas,Carlos José Einicker; Evenhuis,Neal L..
Two new species of Apatomyza Wiedemann from South Africa, A. whocantell spec. nov. and A. angusticephala spec. nov., are described, illustrated, and placed within the most recent key to species. Into the data matrix recently used to infer a phylogenetic hypothesis for the subfamily, were added the two new taxa, in order to verify their position and relationships. They form the most apical clade in Apatomyza.
Tipo: Info:eu-repo/semantics/article Palavras-chave: Apatomyza; A. whocantell spec. nov.; A. angusticephala spec. nov.; Bombyliidae; Diptera; Taxonomy; Phylogeny.
Ano: 2005 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S0031-10492005002300001
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Comparative morphology among representatives of main taxa of Scaphopoda and basal protobranch Bivalvia (Mollusca) Pap. Avulsos de Zool. (São Paulo)
Simone,Luiz Ricardo L..
This study deals with detailed morphology and anatomy of 4 species of Scaphopoda and 5 species of protobranch Bivalvia. Both classes are traditionally grouped in the taxon Diasoma, which has been questioned by different methodologies, such as molecular and developmental. This study is developed under a phylogenetic methodology with the main concern in performing it in an intelligible and testable methodology. The analyzed Scaphopoda species came from the Brazilian coast and belong to the family Dentaliidae [(1) Coccodentalium carduus; (2) Paradentalium disparile] and Gadiliidae; [(3) Polyschides noronhensis, n. sp. from Fernando de Noronha Archipelago; (4) Gadila braziliensis]. These species represent the main branches of the class Scaphopoda. From...
Tipo: Info:eu-repo/semantics/article Palavras-chave: Scaphopoda; Bivalvia; Diasoma; Phylogeny; Morphology.
Ano: 2009 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S0031-10492009003200001
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Phylogenetic relationships of the genus Sibynophis (Serpentes: Colubroidea) Pap. Avulsos de Zool. (São Paulo)
Zaher,Hussam; Grazziotin,Felipe G.; Graboski,Roberta; Fuentes,Ricardo G.; Sánchez-Martinez,Paola; Montingelli,Giovanna G.; Zhang,Ya-Ping; Murphy,Robert W..
We present the results of the first molecular analysis of the phylogenetic affinities of the Asian colubroid genus Sibynophis. We recovered a sister-group relationship between Sibynophis and the New World Scaphiodontophis. Although Liophidium sometimes is associated with these genera, the relationship is distant. Morphological characters that Liophidium shares with Sibynophis and Scaphiodontophis are resolved as homoplasies that probably reflect the similarities of their specialized feeding habits. The traditional subfamily Sibynophiinae is elevated to the family-level, and Scaphiodontophiinae is placed in its synonymy.
Tipo: Info:eu-repo/semantics/article Palavras-chave: Sibynophiidae; Sibynophis; Scaphiodontophis; Phylogeny.
Ano: 2012 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S0031-10492012001200001
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A new species of Mesoclemmys, from the open formations of northeastern Brazil (Chelonii, Chelidae) Pap. Avulsos de Zool. (São Paulo)
Bour,Roger; Zaher,Hussam.
A new species of South American side-necked turtle is described from the state of Piauí, Brazil. It is related to the Amazonian species of the genus Mesoclemmys s.l. (new acceptation) and is apparently a biogeographically relictual population of a species formerly living under a more humid climate in northeastern Brazil.
Tipo: Info:eu-repo/semantics/article Palavras-chave: Chelonii; Chelidae; Systematics; Taxonomy; Phylogeny; Mesoclemmys perplexa; New species; Piauí; Brazil.
Ano: 2005 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S0031-10492005002400001
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Molecular phylogeny of advanced snakes (Serpentes, Caenophidia) with an emphasis on South American Xenodontines: a revised classification and descriptions of new taxa Pap. Avulsos de Zool. (São Paulo)
Zaher,Hussam; Grazziotin,Felipe Gobbi; Cadle,John E.; Murphy,Robert W.; Moura-Leite,Julio Cesar de; Bonatto,Sandro L..
We present a molecular phylogenetic analysis of caenophidian (advanced) snakes using sequences from two mitochondrial genes (12S and 16S rRNA) and one nuclear (c-mos) gene (1681 total base pairs), and with 131 terminal taxa sampled from throughout all major caenophidian lineages but focussing on Neotropical xenodontines. Direct optimization parsimony analysis resulted in a well-resolved phylogenetic tree, which corroborates some clades identified in previous analyses and suggests new hypotheses for the composition and relationships of others. The major salient points of our analysis are: (1) placement of Acrochordus, Xenodermatids, and Pareatids as successive outgroups to all remaining caenophidians (including viperids, elapids, atractaspidids, and all...
Tipo: Info:eu-repo/semantics/article Palavras-chave: Serpentes; Colubridae; Caenophidia; Phylogeny; Classification; Systematics; Xenodontinae; Dipsadinae; New genus; Elapoidea; Colubroidea; South America; West Indies.
Ano: 2009 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S0031-10492009001100001
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Genetic characterization and nitrogen fixation capacity of Rhizobium strains on common bean PAB
González,Tehuni Orlando; Campanharo,João Carlos; Lemos,Eliana Gertrudes de Macedo.
This study aimed to genetically characterize four new Rhizobium strains, and to evaluate their nodulation and fixation capacity compared to commercial strains and to native rhizobia population of a Brazilian Rhodic Hapludox. Two experiments were carried out in randomized blocks design, under greenhouse conditions, in 2007. In the first experiment, the nodulation and nitrogen fixation capacity of new strains were evaluated, in comparison to the commercial strains CIAT-899 and PRF-81 and to native soil population. It was carried out in plastic tubes filled with vermiculite. DNA extractions and PCR sequencing of the intergenic space were made from the isolated pure colonies, in order to genetically characterize the strains and the native rhizobia population....
Tipo: Info:eu-repo/semantics/article Palavras-chave: Phaseolus vulgaris; Biological nitrogen fixation; Intergenic space; Phylogeny; Sequencing; Soil rhizobia population.
Ano: 2008 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S0100-204X2008000900012
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Identification and characterization of pathogenic Pestalotiopsis species to pecan tree in Brazil PAB
Lazarotto,Marília; Bovolini,Marciéli Pitorini; Muniz,Marlove Fátima Brião; Harakawa,Ricardo; Reiniger,Lia Rejane Silveira; Santos,Álvaro Figueredo dos.
The objective of this work was to characterize and cluster isolates of Pestalotiopsis species and to identify those that are pathogenic to pecan, based on morphological and molecular characters. Pestalotiopsis spp. isolates were identified by sequencing the internal transcribed spacer (ITS) and β?tubulin regions. Identification methods were compared to indicate the key morphological characters for species characterization. Thirteen isolates were used for the pathogenicity tests. Morphological characterization was performed using the following variables: mycelial growth rate, sporulation, colony pigmentation, and conidial length and width. Ten pathogenic isolates were identified, three as -tubulin regions. Identification methods were compared to indicate...
Tipo: Info:eu-repo/semantics/article Palavras-chave: Carya illinoinensis; ?-tubulin; ITS rDNA; Morphological characters; Phylogeny; UPGMA.
Ano: 2014 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S0100-204X2014000600440
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Occurrence and molecular analysis of quarantine virus in lily cultivation areas in Brazil PAB
Rivas,Eliana Borges; Bôdi,Estevão Cardoso de Almeida; Harakava,Ricardo; Gregori,Fabio; Gonçalves,Marcos Cesar.
Abstract: The objective of this work was to describe the occurrence of quarantine Tulip breaking virus (TBV, synonym Lily mottle virus - LMoV) and Lily symptomless virus (LSV), and their respective molecular analyses, to provide data for supporting TBV removal from the Brazilian A1 quarantine pest list, since this virus has spread among the main commercial lily crops in Brazil. The occurrence of these viruses was detected in 12 cultivation areas through multiplex reverse transcription (RT-PCR), using specific primers to genes encoding the respective coat proteins (CP). Eight fragments of 800 nucleotides (nt) obtained from the LMoV-infected lilies and nine fragments of 600 nt from LSV-infected lilies were sequenced. Phylogenetic tree reconstruction showed a...
Tipo: Info:eu-repo/semantics/article Palavras-chave: Lilium; Lily mottle virus; Lily symptomless virus; Phylogeny; Recombination analysis; RT-PCR..
Ano: 2016 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S0100-204X2016000500615
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Relationships among six herbal species (Curcuma) assessed by four isozymes Phyton
Deng,JB; Ding,CB; Zhang,L; Zhou,YH; Yang,RW.
Four isozymes, superoxide dismutase (SOD), polyphenol oxidase (PPO), malate dehydrogenase (MDH) and cytochrome oxidase (COD) were studied for identification of six herbal species (Curcuma L.). All the 37 study specimens produced a total of 168 polymorphism isozyme bands. The genetic distance coefficients (GS) varied from 0.08 to 0.54. The dendrogram, obtained according to the polymorphism isozyme bands by the UPGMA method with the software NTSYS-pc2.1, contributed to improve the resolution of phylogeny. From the dendrogram, it was possible to differentiate between the wild and cultivated specimens of C. longa, and within C. sichuanensis species.
Tipo: Info:eu-repo/semantics/article Palavras-chave: Curcuma; Isozymes; Genetic relationship; Phylogeny.
Ano: 2011 URL: http://www.scielo.org.ar/scielo.php?script=sci_arttext&pid=S1851-56572011000200010
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Morphological cladistic analysis of Pseudobombax Dugand (Malvaceae, Bombacoideae) and allied genera Rev. Bras. Bot.
Carvalho-Sobrinho,Jefferson Guedes de; Queiroz,Luciano Paganucci de.
(Morphological cladistic analysis of Pseudobombax Dugand (Malvaceae, Bombacoideae) and allied genera). Pseudobombax Dugand belongs to the family Malvaceae subfamily Bombacoideae and aggregates 29 species restricted to the Neotropics. A morphological cladistic analysis of Pseudobombax and allied genera was carried out to test the monophyly of the genus and to provide hypotheses on its phylogeny. Parsimony analyses were based on 40 morphological characters and 28 species, 14 belonging to Pseudobombax and 14 to other species of Bombacoideae, Matisieae (Malvoideae) and Ochromeae. Nine most parsimonious trees (144 steps, ci 0.40, ri 0.67) were produced when 10 multistate characters were taken as ordered while only two most parsimonious trees (139 steps, ci...
Tipo: Info:eu-repo/semantics/article Palavras-chave: Biogeography; Evolution; Morphology; Phylogeny; Taxonomy.
Ano: 2011 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S0100-84042011000200007
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Genetic Diversity and Phyletic Evolution of Eleven Chinese Indigenous and Three Commercial Chicken Breeds by mtDNA Sequences Rev. Bras. Ciênc. Avic.
Yu,C; Qiu,M; Jiang,X; Zhang,Z; Du,H; Li,Q; Xia,B; Song,X; Hu,C; Xiong,X; Yang,L; Peng,H; Chen,J; Wang,Y; Yang,C.
ABSTRACT Chinese indigenous chicken breeds are geographically widespread, and a total of 116 indigenous chicken breeds are listed as Chinese national genetic resources. However, these indigenous chicken breeds are facing serious challenges as declining population and germplasm degeneration because lots of commercial chicken breeds had been introduced. In this study, the genetic variations of eleven Chinese indigenous chicken breeds of Sichuan province and three commercial chicken breeds were investigated based on the partial mitochondrial DNA D-loop of 487bp in length. 147 individuals from 14 breeds were examined and 34 haplotypes were observed. Genetic diversity analysis showed that the highest haplotype diversity level was found in Dahen Chicken (DH)...
Tipo: Info:eu-repo/semantics/article Palavras-chave: Chinese chicken; Mitochondrial DNA; Cluster analysis; Gene flow; Phylogeny.
Ano: 2019 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1516-635X2019000400308
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On the nesting biology of Pirhosigma Giordani Soika (Hymenoptera, Vespidae, Eumeninae), with special reference to the use of vegetable matter Rev. Bras. entomol.
Hermes,Marcel G.; Somavilla,Alexandre; Garcete-Barrett,Bolívar R..
On the nesting biology of Pirhosigma Giordani Soika (Hymenoptera, Vespidae, Eumeninae), with special reference to the use of vegetable matter. The use of vegetable matter in nest building is not widespread among the Eumeninae, and is reported for the first time for the two species of potter wasps Pirhosigma superficiale and P. limpidum. These wasps make mostly spherical mud nests over which they attach small pieces of unmasticated plant matter. Use of plant fragments in this group of wasps is interpreted as camouflage behavior.
Tipo: Info:eu-repo/semantics/article Palavras-chave: Eumenini; Insecta; Nest construction; Phylogeny.
Ano: 2013 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S0085-56262013000400016
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Meliponini neotropicais: o gênero Partamona Schwarz, 1939 (Hymenoptera, Apidae, Apinae) - bionomia e biogeografia Rev. Bras. entomol.
Camargo,João M. F.; Pedro,Silvia R. M..
This work, dedicated to the study of nesting habits of the species of the Neotropical genus Partamona Schwarz, is a sequence to the taxonomic revision recently published elsewhere. A total of 214 nests and nest aggregations of 18 species [Partamona epiphytophila Pedro &amp; Camargo, 2003; P. testacea (Klug, 1807); P. mourei Camargo, 1980; P. vicina Camargo, 1980; P. auripennis Pedro &amp; Camargo, 2003; P. combinata Pedro &amp; Camargo, 2003; P. chapadicola Pedro &amp; Camargo, 2003; P. nhambiquara Pedro &amp; Camargo, 2003; P. ferreirai Pedro &amp; Camargo, 2003; P. pearsoni (Schwarz, 1938); P. gregaria Pedro &amp; Camargo, 2003; P. batesi Pedro &amp; Camargo, 2003; P. ailyae Camargo, 1980; P. cupira (Smith, 1863); P....
Tipo: Info:eu-repo/semantics/article Palavras-chave: Biogeography; Meliponini; Nests; Partamona; Phylogeny.
Ano: 2003 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S0085-56262003000300001
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Distributional patterns of the Neotropical genus Thecomyia Perty (Diptera, Sciomyzidae) and phylogenetic support Rev. Bras. entomol.
Pires,Amanda Ciprandi; Marinoni,Luciane.
Distributional patterns of the Neotropical genus Thecomyia Perty (Diptera, Sciomyzidae) and phylogenetic support. The distributional pattern of the genus Thecomyia Perty, 1833 was defined using panbiogeographic tools, and analyzed based on the phylogeny of the group. This study sought to establish biogeographical homologies in the Neotropical region between different species of the genus, based on their distribution pattern and later corroboration through its phylogeny. Eight individual tracks and 16 generalized tracks were identified, established along nearly the entire swath of the Neotropics. Individual tracks are the basic units of a panbiogeographic study, and correspond to the hypothesis of minimum distribution of the organisms involved. The...
Tipo: Info:eu-repo/semantics/article Palavras-chave: Areas of endemism; Diversification; Panbiogeography; Phylogeny; Tetanocerini.
Ano: 2011 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S0085-56262011000100002
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