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Registros recuperados: 63
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Effects of extraction method and storage of dry tissue on marine lipids and fatty acids ArchiMer
Sardenne, Fany; Bodin, Nathalie; Metral, Luisa; Crottier, Anais; Le Grand, Fabienne; Bideau, Antoine; Brisset, Blandine; Bourjea, Jerome; Saraux, Claire; Bonhommeau, Sylvain; Kerzerho, Vincent; Bernard, Serge; Rouyer, Tristan.
Various protocols are currently used to study marine lipids, but there is a growing interest in working on dry samples that are easier to transport. However, reference protocols are still lacking for dry samples. In order to make recommendations on this use, lipid classes and fatty acids (FA) obtained from six analytical protocols using two different tissue states (dry vs wet) and three extraction methods (automat vs manual potter vs leaving the solvent to work on tissue) were compared. Three dry storage modes of tissue (freezer vs gas nitrogen vs dry room) during one and three months were also compared. These comparisons were made on seven marine species with different lipid profiles, including fishes, crustaceans and mollusks. Lipid classes and FA...
Tipo: Text Palavras-chave: Degradation; Freeze-drying; Lyophilization; Lipid class; Marine animal; Protocol.
Ano: 2019 URL: https://archimer.ifremer.fr/doc/00467/57898/60189.pdf
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Overfishing causes frequent fish population collapses but rare extinctions ArchiMer
Le Pape, Olivier; Bonhommeau, Sylvain; Nieblas, Anne-elise; Fromentin, Jean-marc.
Tipo: Text
Ano: 2017 URL: http://archimer.ifremer.fr/doc/00392/50387/51097.pdf
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Rapid changes in growth, condition, size and age of small pelagic fish in the Mediterranean ArchiMer
Van Beveren, Elisabeth; Bonhommeau, Sylvain; Fromentin, Jean-marc; Bigot, Jean-louis; Bourdeix, Jean-herve; Brosset, Pablo; Roos, David; Saraux, Claire.
Since 2007, the ecosystem of the Gulf of Lions has shifted to a different regime, characterised by a low anchovy (Engraulis encrasicolus) and sardine (Sardina pilchardus) biomass and a remarkably high sprat (Sprattus sprattus) biomass. Surprisingly, the abundance and recruitment of anchovy and sardine remained high. To understand which processes (bottom-up or top-down control, etc.) could have caused this shift, we studied the changes in body condition, growth and size and age of anchovy, sardine and sprat over 1984–1985 and 1992–2012, using data from scientific surveys. The annual age structure of anchovy and sardine was estimated using Bayesian mixture models based on size frequency data with priors on the age–length relationship derived from independent...
Tipo: Text
Ano: 2014 URL: http://archimer.ifremer.fr/doc/00192/30335/29917.pdf
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Satellite remote sensing for an ecosystem approach to fisheries management ArchiMer
Chassot, Emmanuel; Bonhommeau, Sylvain; Reygondeau, Gabriel; Nieto, Karen; Polovina, Jeffrey J.; Huret, Martin; Dulvy, Nicholas K.; Demarcq, Herve.
Satellite remote sensing (SRS) of the marine environment has become instrumental in ecology for environmental monitoring and impact assessment, and it is a promising tool for conservation issues. In the context of an ecosystem approach to fisheries management (EAFM), global, daily, systematic, high-resolution images obtained from satellites provide a good data source for incorporating habitat considerations into marine fish population dynamics. An overview of the most common SRS datasets available to fishery scientists and state-of-the-art data-processing methods is presented, focusing on recently developed techniques for detecting mesoscale features such as eddies, fronts, filaments, and river plumes of major importance in productivity enhancement and...
Tipo: Text Palavras-chave: Ecosystem approach; Fisheries; Mesoscale; Satellite; Tracking.
Ano: 2011 URL: http://archimer.ifremer.fr/doc/00031/14188/11468.pdf
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An online tool to easily run stock assessment models, using SS3 and SWO as an example ArchiMer
Nieblas, Anne-elise; Bonhommeau, Sylvain; Imzilen, Taha; Fu, Dan; Fiorellato, Fabio; Barde, Julien.
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Ano: 2017 URL: http://archimer.ifremer.fr/doc/00403/51439/52008.pdf
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Sardine ( Sardina pilchardus ) larval dispersal in the Iberian Upwelling System, using coupled biophysical techniques ArchiMer
Santos, Amp; Nieblas, Anne-elise; Verley, P.; Teles-machado, A.; Bonhommeau, Sylvain; Lett, C.; Garrido, S.; Peliz, A..
The European sardine (Sardina pilchardus) is the most important small pelagic fishery of the Western Iberia Upwelling Ecosystem (WIUE). Recently, recruitment of this species has declined due to changing environmental conditions. Furthermore, controversies exist regarding its population structure with barriers thought to exist between the Atlantic-Iberian Peninsula, Northern Africa, and the Mediterranean. Few studies have investigated the transport and dispersal of sardine eggs and larvae off Iberia and the subsequent impact on larval recruitment variability. Here, we examine these issues using a Regional Ocean Modeling System climatology (1989-2008) coupled to the Lagrangian transport model, Ichthyop. Using biological parameters from the literature, we...
Tipo: Text Palavras-chave: Iberian Peninsula; Sardina pilchardus; Larval dispersal; Lagrangian transport; Ichthyop; Regional Ocean Modeling System.
Ano: 2018 URL: https://archimer.ifremer.fr/doc/00427/53814/54784.pdf
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Co-Occurrence and Habitat Use of Fin Whales, Striped Dolphins and Atlantic Bluefin Tuna in the Northwestern Mediterranean Sea ArchiMer
Bauer, Robert; Fromentin, Jean-marc; Demarcq, Herve; Brisset, Blandine; Bonhommeau, Sylvain.
Different dolphin and tuna species have frequently been reported to aggregate in areas of high frontal activity, sometimes developing close multi-species associations to increase feeding success. Aerial surveys are a common tool to monitor the density and abundance of marine mammals, and have recently become a focus in the search for methods to provide fisheries-independent abundance indicators for tuna stock assessment. In this study, we present first density estimates corrected for availability bias of fin whales (Balaenoptera physalus) and striped dolphins (Stenella coeruleoalba) from the Golf of Lions (GoL), compared with uncorrected estimates of Atlantic bluefin tuna (ABFT; Thunnus thynnus) densities from 8 years of line transect aerial surveys. The...
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Ano: 2015 URL: https://archimer.ifremer.fr/doc/00284/39481/37969.pdf
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Projections for east Atlantic and Mediterranean bluefin tuna ArchiMer
Kell, Laurence T; Bonhommeau, Sylvain; Fromentin, Jean-marc; Ortiz, Mauricio; Walter, John.
The management plan for East Atlantic and Mediterranean bluefin tuna is based on the Kobe II strategy matrix (K2SM), which indicates the probability of SSB>BMSY and F <FMSY for different levels of catch projections. In this paper we document the projections for eastern Atlantic and Mediterranean bluefin tuna.
Tipo: Text Palavras-chave: Stock assessment; Bluefin tuna.
Ano: 2013 URL: http://archimer.ifremer.fr/doc/00192/30276/28739.pdf
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Integrating Over Sea Radio Channel for Sea Turtles Localization in the Indian Ocean ArchiMer
Guegan, Loic; Murad, Nour Mohammad; Lebreton, Jean Mickael; Bonhommeau, Sylvain.
This paper deals with the modeling of over sea radio channel with the aim of establishing sea turtle localization off the coast of Reunion Island but also on Europa Island in the Mozambique Channel. In order to model this radio channel, we are making a measurement protocol. In a first approach, measurements of turtle trajectory were done over land and finally it will be conducted over sea. We have scheduled an over sea measurement campaign in the middle of June. This paper shows a signal cross correlation technique used to characterize the over sea propagation channel.
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Ano: 2017 URL: http://archimer.ifremer.fr/doc/00435/54670/56098.pdf
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Assessing causal links in fish stock–recruitment relationships ArchiMer
Pierre, Maud; Rouyer, Tristan; Bonhommeau, Sylvain; Fromentin, Jean-marc.
Understanding whether recruitment fluctuations in fish stock arise from stochastic forcing (e.g. environmental variations) rather than deterministic forces (e.g. intrinsic dynamics) is a long standing question with important applied consequences for fisheries ecology. In particular, the relationship between recruitment, spawning stock biomass and environmental factors is still poorly understood, even though this aspect is crucial for fisheries management. Fisheries data are often short, but arise from complex dynamical systems with a high degree of stochastic forcing, which are difficult to capture through classic modelling approaches. In the present study, recent statistical approaches based on the approximation of the attractors of dynamical systems are...
Tipo: Text Palavras-chave: Causality; Forecasting models; Marine.
Ano: 2018 URL: https://archimer.ifremer.fr/doc/00408/51930/52555.pdf
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The True Challenge of Giant Marine Reserves ArchiMer
Kaplan, David; Bach, Pascal; Bonhommeau, Sylvain; Chassot, Emmanuel; Chavance, Pierre; Dagorn, Laurent; Davies, Tim; Dueri, Sibylle; Fletcher, Rick; Fonteneau, Alain; Fromentin, Jean-marc; Gaertner, Daniel; Hampton, John; Hilborn, Ray; Hobday, Alistair; Kearney, Robert; Kleiber, Pierre; Lehodey, Patrick; Marsac, Francis; Maury, Olivier; Mees, Chris; Menard, Frederic; Pearce, John; Sibert, John.
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Ano: 2013 URL: http://archimer.ifremer.fr/doc/00139/25068/23186.pdf
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Impact of warming on abundance and occurrence of flatfish populations in the Bay of Biscay (France) ArchiMer
Hermant, Marie; Lobry, Jeremy; Bonhommeau, Sylvain; Poulard, Jean-charles; Le Pape, Olivier.
The aim of the present study was to analyse the influence of warming on flatfish populations in the Bay of Biscay. 17 autumn cruises conducted from 1987 to 2006 over the whole shelf of the Bay of Biscay provided data for the abundance and occurrence of adults for twenty flatfish species. Trends in flatfish abundance were analysed with regard to geographic range of populations and interannual fluctuations in abundance were related to seawater temperature. Results showed significant trends in abundance and occurrence for 55% of the flatfish species in the Bay of Biscay. The response to warming of seawater was correlated to geographic ranges of species. While the abundance of the northern temperate species decreased, that of southern ones increased. Moreover,...
Tipo: Text Palavras-chave: Flatfish; Temporal Trends; Interannual Variability; Climate Change; Geographic Distribution; Bay of Biscay.
Ano: 2010 URL: http://archimer.ifremer.fr/doc/00008/11922/8638.pdf
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Investigating the performances of a bayesian biomass dynamic model with informative priors on Atlantic bluefin tuna ArchiMer
Simon, M; Fromentin, Jean-marc; Bonhommeau, Sylvain; Gaertner, Daniel; Etienne, Marie-pierre.
We examined the possibility of eliciting informative priors for the parameters of a biomass production model with emphasis on the intrinsic population growth rate of Atlantic bluefin tuna (Thunnus thynnus). We reviewed the literature to propose probability distribution functions for the vital rates and used a matrix population model structured by age (Leslie) to compute the population growth rate. A generalized biomass production model is applied on two CPUE and catch datasets (1976-1996 and 1976-2006) using informative priors. The population growth rate prior has a diffuse distribution and is very sensitive to young of the year mortality rate. Thus, we compared the performances of this prior with a commonly used prior for tunas population growth rate. We...
Tipo: Text Palavras-chave: Bayesian model; Population growth rate; Uncertainties; Natural mortality; CPUE; Tuna fisheries; Thunnus thynnus.
Ano: 2011 URL: http://archimer.ifremer.fr/doc/00192/30281/28756.pdf
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The fisheries history of small pelagics in the Northern Mediterranean ArchiMer
Van Beveren, Elisabeth; Fromentin, Jean-marc; Rouyer, Tristan; Bonhommeau, Sylvain; Brosset, Pablo; Saraux, Claire.
Since 2007, the biomass of sardine and anchovy in the NW Mediterranean has remained persistently low, whereas the biomass of the commercially low-valued sprat has exploded. Also, simultaneous decreases in condition, size, and/or age of these populations were observed. Altogether, this resulted in a drop in landings of small pelagics. To understand the amplitude of these events and to provide a baseline scenario against which current changes can be compared, we compiled exceptionally long landing series (1865–2013) of sardine, anchovy, and mackerel for different subregions of the southern French coast. We characterized the fluctuations of these landings and compared these with environmental drivers (sea surface temperature, Rhône river discharge, North...
Tipo: Text Palavras-chave: Anchovy; Fish landings; Gulf of Lions; Historical time series; Mackerel; Sardine.
Ano: 2016 URL: https://archimer.ifremer.fr/doc/00319/43001/42561.pdf
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Update of the abundance index for juvenile fish derived from aerial surveys of bluefin tuna in the western Mediterranean Sea ArchiMer
Rouyer, Tristan; Brisset, Blandine; Bonhommeau, Sylvain; Fromentin, Jean-marc.
Se describe un enfoque que hace posible ejecutar online el conjunto de códigos utilizados para la evaluación del stock de atún rojo del este (BFTE) de ICCAT. En 2014, el Grupo de especies de atún rojo de ICCAT ha podido ejecutar miles de ensayos de modelos utilizando la paralelización de códigos R y Fortran en un superordenador. Este nuevo enfoque tiene muchos beneficios científicos, pero muy pocos participantes podrían reproducirlo sin unas capacidades específicas. Desde noviembre de 2015, el H2020 BlueBridge project está financiando un ingeniero para crear un sitio web (o VRE de Entorno de investigación virtual) en el que los usuarios puedan parametrizar y ejecutar varios pasos del trabajo de la evaluación de atún rojo del este. Reempaquetando los...
Tipo: Text Palavras-chave: Bluefin tuna; Scientific cloud; Stock assessment; Grid computing; Online processing.
Ano: 2018 URL: http://archimer.ifremer.fr/doc/00435/54638/56043.pdf
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Populations ichtyologiques de grands pélagiques. Sous-région marine Mers celtiques. Evaluation initiale DCSMM. ArchiMer
Fromentin, Jean-marc; Bonhommeau, Sylvain.
Tipo: Text Palavras-chave: Mers celtiques; Grands poissons pélagiques; Biocénose; Exploitation; Etat des stocks.
Ano: 2012 URL: https://archimer.ifremer.fr/doc/00328/43949/43522.pdf
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Prey predator interactions in the face of management regulations: changes in Mediterranean small pelagics are not due to increased tuna predation ArchiMer
Van Beveren, Elisabeth; Fromentin, Jean-marc; Bonhommeau, Sylvain; Nieblas, Anne-elise; Metral, Luisa; Brisset, Blandine; Jusup, Marko; Bauer, Robert Klaus; Brosset, Pablo; Saraux, Claire.
Thunnus thynnus Sardina pilchardus Engraulis encrasicolus
Tipo: Text
Ano: 2017 URL: https://archimer.ifremer.fr/doc/00371/48215/50340.pdf
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Tagging Atlantic bluefin tuna from a farming cage: An attempt to reduce handling times for large scale deployments ArchiMer
Rouyer, Tristan; Bonhommeau, Sylvain; Giordano, Nicolas; Ellul, Saviour; Ellul, Giovanni; Deguara, Simeon; Wendling, Bertrand; Belhaj, Mohamed Moez; Kerzerho, Vincent; Bernard, Serge.
Our knowledge on the biology and ecology of marine species have improved greatly through the use of archival tags by enabling the collection on information from individual in the wild. This is specifically true for large pelagic species such as the Atlantic Bluefin tuna (ABFT, Thunnus thynnus) where, for the first time, it has been possible to confirm through fisheries-independent data, migration patterns, reproductive and feeding behaviours and habitat use. However, large-scale tagging experiments that would enable researchers to tackle group behaviour are difficult to set up. On the one hand, the impact of the actual tagging operation should be as minimal as possible to avoid any change in behaviour of the fish which could influence tag data analyses. On...
Tipo: Text Palavras-chave: Large Atlantic bluefin tuna; Electronic tagging; Release; Farming.
Ano: 2019 URL: https://archimer.ifremer.fr/doc/00466/57818/60365.pdf
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COASTAL MAPPING AND KITESURFING ArchiMer
Barde, J.; Bonhommeau, Sylvain; Chassot, E.; Motah, B..
ollecting data on aquatic biodiversity is very challenging because of the difficulty to access underwater ecosystems. Over the years, field surveys have become easier and cheaper with the development of low cost electronics. Commercial and recreational vessels, including sailboats, can now substantially complement expensive scientific surveys and arrays of observation buoys deployed across the world oceans (Pesant et al., 2015, Karsenti et al., 2011). Meanwhile, a large variety of marine animals such as birds, mammals, and fish have become data collection platforms for both biological and environmental parameters through the advent of archival tags. It becomes obvious that data collection in coastal and high seas will become more popular and that citizen...
Tipo: Text Palavras-chave: Citizen science; Ocean and coastal observing systems; Surfing; Action cameras; Coral reef mapping; Photogrammetry; Deep learning; R.
Ano: 2018 URL: http://archimer.ifremer.fr/doc/00450/56164/57712.pdf
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The food limitation hypothesis for juvenile marine fish ArchiMer
Le Pape, Olivier; Bonhommeau, Sylvain.
Coastal zones are productive areas that serve as nursery grounds for a large number of marine species. However, the processes involved in survival success during the juvenile phase are not well-known. Some authors suggest that the availability of prey is important to support the production of pre-recruit fish whose fitness is enhanced through optimal feeding conditions. Accordingly, recruitment is limited by the carrying capacity of the nursery habitat. In contrast, other authors state that the carrying capacity of the nursery grounds is not fully exploited, suggesting that there is no effect of food limitation. This study combines an overview of the literature, focused on flatfish that are especially dependent on coastal and estuarine nursery grounds, an...
Tipo: Text Palavras-chave: Estuaries and coasts; Food limitation; Habitat functionality; Juvenile fish growth; Size-dependent mortality; Trophic capacity of nursery habitat.
Ano: 2015 URL: http://archimer.ifremer.fr/doc/00164/27542/25712.pdf
Registros recuperados: 63
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