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| Registros recuperados: 96 | |
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| Bardon, Agnes; Vandeputte, Marc; Dupont-nivet, Mathilde; Chavanne, Herve; Haffray, Pierrick; Vergnet, Alain; Chatain, Beatrice. |
| Malformations in farmed fish are a prime research topic as it has a major impact on fish welfare and on the economical value of the product. In this study, the genetic component of spine deformities was estimated in European sea bass, a major species of Mediterranean aquaculture, with the use of a posteriori reconstruction of pedigree with microsatellites. Our population exhibited a very high malformation rate (81%),probably due to intense swimming of fish during pre-growing The heritability of global spine deformities was evaluated to be 0.21 +/- 0.04 on the underlying scale (033 +/- 0.06 for lordosis, 0.13 +/- 0.04 for scoliosis). Deformities scored by an internal or external examination turned out to be genetically the same trait (genetic... |
| Tipo: Text |
Palavras-chave: Genetic correlations; Heritability; Growth; Deformities; Dicentrarchus labrax; European sea bass. |
| Ano: 2009 |
URL: http://archimer.ifremer.fr/doc/2009/publication-6768.pdf |
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| Le Boucher, Richard; Dupont-nivet, Mathilde; Vandeputte, Marc; Kerneis, Thierry; Goardon, Lionel; Labbe, Laurent; Chatain, Beatrice; Bothaire, Marie Josee; Larroquet, Laurence; Medale, Francoise; Quillet, Edwige. |
| Genetic adaptation to dietary environments is a key process in the evolution of natural populations and is of great interest in animal breeding. In fish farming, the use of fish meal and fish oil has been widely challenged, leading to the rapidly increasing use of plant-based products in feed. However, high substitution rates impair fish health and growth in carnivorous species. We demonstrated that survival rate, mean body weight and biomass can be improved in rainbow trout (Oncorhynchus mykiss) after a single generation of selection for the ability to adapt to a totally plant-based diet (15.1%, 35.3% and 54.4%, respectively). Individual variability in the ability to adapt to major diet changes can be effectively used to promote fish welfare and a more... |
| Tipo: Text |
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| Ano: 2012 |
URL: http://archimer.ifremer.fr/doc/00107/21845/19429.pdf |
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| Le Boucher, Richard; Dupont-nivet, M.; Laureau, S.; Labbe, Laurent; Geurden, I.; Medale, F.; Chatain, Beatrice; Vandeputte, Marc; Quillet, E.. |
| World fish farm production is growing rapidly. However, the supply of fishmeal and fish oil, the major ingredients of fish diets, has reached a limit because of the limits in the exploitation of wild fish stocks that cannot be increased to meet a growing demand. The main response, especially in Europe, has been the progressive replacement of fishmeal and fish oil by plant products. However, the strong reduction of growth and sometimes survival of fish fed highly substituted diets has urged research on the genetic potential for adaptation to plant-based diets. Recent results clearly demonstrate that fish can be selected for their capacity to grow when fed plant-based diets, even though the underlying mechanisms remain unknown. Genotype-diet interactions... |
| Tipo: Text |
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| Ano: 2013 |
URL: http://archimer.ifremer.fr/doc/00200/31167/29566.pdf |
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| Dupont Nivet, M; Vandeputte, Marc; Vergnet, Alain; Merdy, O; Haffray, P; Chavanne, H; Chatain, Beatrice. |
| 253 full-sib families from 33 males and 23 females of European seabass were produced in a partly factorial mating design. All fish were reared in the same tank during 14 months, then 7000 of them were dispatched in four farms to different locations (France, Israel, Italy, Portugal) representing a wide variety of environmental conditions. Around 400 g mean weight, 1177 to 1667 fish in each site were weighed and length was measured. Condition factor (K) was calculated. Pedigrees were redrawn a posteriori using microsatellites markers: parental origin could be retraced for 99.2% of fish. Due to a high incidence of deformities, the useful sample size was reduced to 491-670 fish per site. Maternal effects were small. Using a simple animal model, heritability... |
| Tipo: Text |
Palavras-chave: Microsatellites; GxE interactions; Heritability; Growth; Seabass; Dicentrarchus labrax. |
| Ano: 2008 |
URL: http://archimer.ifremer.fr/doc/2008/publication-4404.pdf |
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| Vandeputte, Marc; Gagnaire, P.‐a.; Allal, Francois. |
| The European sea bass (Dicentrarchus labrax L.) is a marine fish of key economic and cultural importance in Europe. It is now more an aquaculture than a fisheries species (>96% of the production in 2016), although modern rearing techniques date back only from the late 1980s. It also has high interest for evolutionary studies, as it is composed of two semispecies (Atlantic and Mediterranean lineages) that have come into secondary contact following the last glaciation. Based on quantitative genetics studies of most traits of interest over the past 10–15 years, selective breeding programs are now applied to this species, which is at the beginning of its domestication process. The availability of a good quality reference genome has accelerated the... |
| Tipo: Text |
Palavras-chave: Dicentrarchus labrax; Genetics; Heritability; Population genetics. |
| Ano: 2019 |
URL: https://archimer.ifremer.fr/doc/00486/59752/62858.pdf |
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| Dupont-nivet, Mathilde; Vandeputte, Marc. |
| Stochastic simulations were used to compare genetic progress and inbreeding depending on whether full sib matings were allowed or not when applying individual selection. Fifteen selection cycles were considered, using a single pair mating design. Two levels of heritability (h(2)) were studied (0.1; 0.5) as well as four different proportions of selected animals (2, 5, 10 and 20%), four population sizes (1000, 2,000, 4,000 and 10,000 candidates) and two levels of inbreeding depression (0 and 5% decrease of phenotype for 10% increase in inbreeding). Fifty replicates were generated for each set of parameters. The simulations revealed that avoiding full sib matings became less and less relevant as population size and proportion of selected animals increased and... |
| Tipo: Text |
Palavras-chave: Selection; Sib mating; Inbreeding; Genetic variability; Stochastic simulations; Fish. |
| Ano: 2011 |
URL: http://archimer.ifremer.fr/doc/00035/14587/11952.pdf |
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| Vandeputte, Marc; Garouste, Romain; Dupont-nivet, Mathilde; Haffray, Pierrick; Vergnet, Alain; Chavanne, Herve; Laureau, Stanislas; Ron, Tetsuzan Benny; Pagelson, Glen; Mazorra, Carlos; Ricoux, Remi; Marques, Pedro; Gameiro, Marta; Chatain, Beatrice. |
| Sea bass is a major species in Mediterranean aquaculture, but has a distribution area ranging from North Atlantic to South Mediterranean, with a population structure previously revealed by population genetics. To test the farming performances of wild sea bass populations, we produced a partial diallel cross mating scheme, using sires originating from North Atlantic (NAT), South Atlantic (SAT), West Mediterranean (WEM), North-East Mediterranean (NEM) and South-East Mediterranean (SEM). Fifteen sires per origin were mated in a full-factorial design using artificial fertilization with 9 NAT dams and 17 WEM dams, producing 10 population crosses and 1950 potential full-sib families. All fish were reared together, then tagged at an average weight of 20 g and... |
| Tipo: Text |
Palavras-chave: European sea bass; Dicentrarchus labrax; Selective breeding; Growth; Processing yields; Genotype by environment interaction. |
| Ano: 2014 |
URL: http://archimer.ifremer.fr/doc/00171/28265/26514.pdf |
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| Ferrari, Sebastien; Chatain, Beatrice; Cousin, Xavier; Leguay, Didier; Vergnet, Alain; Vidal, Marie-odile; Vandeputte, Marc; Begout, Marie-laure. |
| Although individual electronic tagging using PIT (Passive Integrated Transponder) tags is well established, it is mainly used for fish > 60 mm in length. Since electronic tagging is an ideal identification method, we used RFID (Radio Frequency Identification) microtags (6 mm in length, 1 mm in diameter, 10 mg in mass) to characterize individual fish from the early stages of their development and throughout their lifecycles. We used sea bass, Dicentrarchus labrax, (105 day-old fish weighing between 100 and 1100 mg) and studied the effects of intra-coelomic tagging in half the population using different endpoints including survival and tag reading, growth over 6 months and swimming responses. Dead fish were counted daily, biometric data were collected at... |
| Tipo: Text |
Palavras-chave: Tagging effects; Swimming behavior; Sexual dimorphism; Dicentrarchus labrax. |
| Ano: 2014 |
URL: http://archimer.ifremer.fr/doc/00175/28645/27072.pdf |
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| Vandeputte, Marc; Quillet, Edwige; Chatain, Beatrice. |
| Sex ratios in farmed European sea bass are highly biased towards males (75 to 95%), which is problematic for aquaculture. In this mini-review, we re-analyse fisheries literature data about sex ratios in wild sea bass from 13 population samples, representing altogether 4889 individuals covering the major part of the distribution range of the species. We find that as a whole, the sex ratio of wild populations is biased towards females (59.4% females, p < 0.001), but that the sex ratio of the younger fish (< 30 cm total length) is balanced (52.0% females, p = 0.15), while the sex ratio of the older fish is heavily biased towards females (69.5% females, p < 0.01). Possible causes of these differences (differential longevity, biased sampling) are... |
| Tipo: Text |
Palavras-chave: Sex ratio; Genetics; Sex determination; Fish aquaculture; Dicentrarchus labrax. |
| Ano: 2012 |
URL: http://archimer.ifremer.fr/doc/00078/18882/16450.pdf |
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| Fraslin, Clemence; Dupont-nivet, Mathilde; Haffray, Pierrick; Bestin, Anastasia; Vandeputte, Marc. |
| Fillet yield (i.e. the proportion of edible flesh from a given amount of fish) is a trait of high economic interest for species sold as fillets. Improving it by selective breeding is not an easy task, as it is a ratio trait, which causes mathematical difficulties. It is moreover a specific ratio where numerator (fillet weight) and denominator (body weight) are very strongly correlated (genetic and phenotypic correlations in the range 0.89–0.99). This led some authors to conclude that they have the same genetic and phenotypic basis, precluding selection for improved fillet yield. In this study, we propose to study fillet yield as a component of two traits, fillet weight and waste weight (waste weight = body weight-fillet weight, so the sum of head, bones,... |
| Tipo: Text |
Palavras-chave: Aquaculture; Genetics; Heritability; Selection; Processing yields. |
| Ano: 2018 |
URL: https://archimer.ifremer.fr/doc/00415/52599/53430.pdf |
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| Haffray, Pierrick; Enez, Florian; Bugeon, Jerome; Chapuis, Herve; Dupont-nivet, Mathilde; Chatain, Beatrice; Vandeputte, Marc. |
| Marker-based parentage assignment provides the opportunity to investigate factors of efficiency for mixed-family designs and factorial mating. In such designs, family size is both uncontrolled and small, which may be thought to limit the accuracy of estimated breeding values (EBVs). The objective of this work was to estimate the accuracy of EBVs of growth and quality traits in a large factorial mating design and in commercial breeding conditions. An expected six hundred full-sib families of rainbow trout Oncorhynchus mykiss (2042 fish in total) were produced by ten factorial matings of six dams with ten sires. Fish were phenotyped for body weight, carcass yield, fillet yield, fillet fat content and fillet colour, and family information was recovered using... |
| Tipo: Text |
Palavras-chave: Aquaculture; Salmonids; DNA parentage assignment; Sib selection; EBV accuracy. |
| Ano: 2018 |
URL: https://archimer.ifremer.fr/doc/00429/54062/55395.pdf |
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| Labbe, Catherine; Suquet, Marc; Michel, Gildas; Duclos, Delphine; Lemarchand, Alain; Le Hellec, Catherine; Vandeputte, Marc; Quittet, Benjamin; Goardon, Lionel; Pincent, Cedric; Haffray, Pierrick. |
| Tipo: Text |
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| Ano: 2012 |
URL: http://archimer.ifremer.fr/doc/00099/20979/18602.pdf |
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| Besson, M.; Komen, H.; Aubin, J.; De Boer, I. J. M.; Poelman, M.; Quillet, Edwige; Vancoillie, C.; Vandeputte, Marc; Van Arendonk, J A M. |
| In fish farming, economic values (EV) of breeding goal traits are lacking, even though they are key parameters when defining selection objectives. The aim of this study was to develop a bioeconomic model to estimate EV of 2 traits representing production performances in fish farming: the thermal growth coefficient (TGC) and the feed conversion ratio (FCR). This approach was applied to a farm producing African catfish (Clarias gariepinus) in a recirculating aquaculture system (RAS). In the RAS, 2 factors could limit production level: the nitrogen treatment capacity of the biofilter or the fish density in rearing tanks at harvest. Profit calculation includes revenue from fish sales, cost of juveniles, cost of feed, cost of waste water treatment, and fixed... |
| Tipo: Text |
Palavras-chave: Economic values; Feed conversion ratio; Fish farming; Recirculating aquaculture system; Selective breeding; Thermal growth coefficient. |
| Ano: 2014 |
URL: http://archimer.ifremer.fr/doc/00245/35593/34277.pdf |
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| Vandeputte, Marc. |
| AQUAEXCEL2020 is a H2020 infrastructure project coordinated by the Institut National de la Recherche Agronomique (INRA), France, with 22 partners from 10 countries, combining 39 research infrastructures. The project follows-up the AQUAEXCEL project (2011-2015), started in October 2015 and will finish in September 2020. |
| Tipo: Text |
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| Ano: 2015 |
URL: http://archimer.ifremer.fr/doc/00307/41793/41001.pdf |
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| Haffray, Pierrick; Vandeputte, Marc; Petit, V.; Pincent, Cedric; Chatain, Beatrice; Chapuis, H.; Meriaux, J. C.; Coudurier, B.; Quillet, E.; Dupont-nivet, M.. |
| Application of DNA parentage assignment for commercial selection in aquaculture is still rare. An experiment was performed to quantify and to minimize maternal effects on growth in rainbow trout. Six hundred families were reared until 198 day post fertilization (dpf) according to two different procedures. In the first procedure (NORM), all families were pooled at eyed stage. In the second procedure (MIN), where maternal effects due to differences in egg size were expected to be minimal, the spawns were divided into sub-groups with similar mean egg weight at eyed stage. These sub-groups were then pooled when they achieved the same mean body length (147 dpf). Genetic parameters were estimated for body weight, body length and condition factor at 198 dpf, with... |
| Tipo: Text |
Palavras-chave: Rainbow trout; Fingerprint; Maternal effect; Heritability; Growth; Triploid. |
| Ano: 2012 |
URL: http://archimer.ifremer.fr/doc/00115/22639/20395.pdf |
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| Registros recuperados: 96 | |
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