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Conditions d'apparition de densités accrues de dinoflagellés Dinophysis dans le pertuis d'Antioche et les eaux adjacentes. Campagnes Dinopertuis 89 ArchiMer
Delmas, Daniel; Herbland, Alain; Maestrini, Serge; Mornet, Francoise; Morand, Philippe; Spano, Anna-maria; Burgeot, Thierry; Margat, Sylvie; Charpentier, Gabriel; Fillon, Alain; Leguay, Didier; Thomas, Gerard; Bacher, Cedric; Heral, Maurice; Prou, Jean.
Environmental and species features which lead to increases in cell density of the D.S.P. Dinoflagellate Dinophysis in inshore and offshore waters of the île de Ré - île d'Oléron area, France (cruises "Dinopertuis89"). Four weekly sampling series have been carried out, within 10 May – 31 May 1989, at 24 stations located from inshore to offshore waters of the "île de Ré" - "île d’Oléron" area, with the aim to investigate (i) whether Dinophysis increases in cell density occur first in offshore waters and then, eventually, are pushed to the coast, or develop simultaneously in the whole area, and (ii) whether there are some environmental conditions which are related to Dinophysis blooms. Depths of sampling have been stated on the bas is of STD profiles. All...
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Ano: 1990 URL: http://archimer.ifremer.fr/doc/00174/28532/26916.pdf
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A physical-biogeochemical coupling scheme for modeling marine coastal ecosystems ArchiMer
Filgueira, Ramon; Grant, Jon; Bacher, Cedric; Carreau, Michel.
Ecological modeling of dynamic systems such as marine environments may require detailed spatial resolution when the modeled area is greatly influenced by complex physical circulation. Therefore, the simulation of a marine ecosystem must be underlain by a physical model. However, coupling hydrodynamic and biogeochemical models is not straightforward. This paper presents a modeling technique that can be used to build generic and flexible fully-spatial physical-biogeochemical models to study coastal marine ecosystems using a visual modeling environment (VME). The model core is constructed in Simile, a VME that has the capacity to create multiple instances of submodels that can be interconnected, producing a fully-spatial simulation. The core is designed to...
Tipo: Text Palavras-chave: Physical-biogeochemical coupling; Marine spatial planning; Aquaculture; Simile.
Ano: 2012 URL: http://archimer.ifremer.fr/doc/00071/18231/15842.pdf
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Effet des changements environnementaux sur les communautés phytoplanctoniques et évaluation des risques d’efflorescences d’algues toxiques (PhytoRisk) ArchiMer
Guallar Morillo, Carlos; Chapelle, Annie; Bacher, Cedric.
En résumé, ce rapport présente les éléments suivants : 1. Identification et inventaire des données environnementales disponibles en relation avec l‟espèce A. minutum et Pseudo-nitzschia sur les côtes bretonnes et atlantiques françaises. 2. Description de la méthodologie développée pour l‟étude de la phénologie des efflorescences et la niche écologique des espèces cibles. 3. Présentation des résultats obtenus sur l‟étude de la phénologie d‟A. minutum. 4. Présentation des résultats obtenus sur l‟étude de la niche écologique d‟A. minutum et Pseudo-nitzschia. 5. Tableau de bord récapitulant les facteurs explicatifs, leur évolution et les risques associés en termes d‟efflorescences des espèces ciblées.
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Ano: 2015 URL: http://archimer.ifremer.fr/doc/00315/42640/42019.pdf
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Effet des changements environnementaux sur les communautés phytoplanctoniques et évaluation des risques d’efflorescences d’algues toxiques (PhytoRisk). Livrable : Données environnementales utilisées et modèles de la phénologie des espèces de phytoplancton ArchiMer
Guallar Morillo, Carlos; Chapelle, Annie; Bacher, Cedric.
Ce rapport d'étape présente les éléments suivants : 1. Identification et inventaire des données environnementales disponibles en relation avec l’espèce A. minutum sur les côtes bretonnes et atlantiques françaises. 2. Description de la méthodologie développée pour l’étude de la phénologie des efflorescences d’A. minutum. 3. Présentation des premiers résultats obtenus sur l’étude de la phénologie.
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Ano: 2015 URL: http://archimer.ifremer.fr/doc/00278/38878/37417.pdf
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Numerical analysis of the food web of an intertidal mudflat ecosystem on the Atlantic coast of France ArchiMer
Leguerrier, Delphine; Niquil, Nathalie; Boileau, N; Rzeznik, J; Sauriau, Pierre-guy; Le Moine, Olivier; Bacher, Cedric.
Food web modelling is an ideal way to describe ecosystems, because it accounts for the totality of the relationships between its various components. One difficulty of such an approach, however, lies in the lack of data and information about some ecological relationships, resulting in under-defined systems. Inverse analysis can serve to complete steady-state food webs where the number of direct flow measurements is insufficient relative to the actual number of flows. We applied this method to the intertidal mudflat ecosystem of Brouage (eastern Marennes-Oleron Bay, SW France) and estimated the annual average carbon flows between the compartments of a coupled benthic and pelagic trophic food web from primary producers (microphytobenthos and phytoplankton) to...
Tipo: Text Palavras-chave: Network analysis; Food web; Inverse analysis; Carbon flow.
Ano: 2003 URL: http://archimer.ifremer.fr/doc/2003/publication-3134.pdf
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Phytoplankton composition and selective feeding of the pearl oyster Pinctada margaritifera in the Takapoto lagoon (Tuamotu Archipelago, French Polynesia): in situ study using optical microscopy and HPLC pigment analysis ArchiMer
Loret, P; Pastoureaud, Annie; Bacher, Cedric; Delesalle, B.
The in situ diet of the pearl oyster Pinctada margarifera was determined in the lagoon of Takapoto Atoll by comparing the phytoplankton composition of water and bivalve gut contents using 2 different methods, optical microscopy and HPLC pigment analysis. In order to evaluate the available food resources for pearl oysters in the water column, a new method for estimating the pigment/chlorophyll a (chl a) ratio (based on an inverse analysis) was developed which allowed us to determine the contribution of the main phytoplanktonic groups in terms of chi a. In the water, picocyanobacteria and nanoflagellates predominated, the latter being mainly chlorophytes and prymnesiophytes. Comparisons between the results obtained by the 2 methods of investigation indicated...
Tipo: Text Palavras-chave: Pearl oyster Pinctada margaritifera; Selective feeding; Natural diet; Phytoplankton pigments; Coral reefs; French Polynesia.
Ano: 2000 URL: http://archimer.ifremer.fr/doc/00000/10992/7606.pdf
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Evolution et état du cheptel ostréicole dans le bassin de Marennes-Oléron: intérêt d'une régulation ArchiMer
Heral, Maurice; Bacher, Cedric; Razet, Daniel; Prou, Jean; Deslous-paoli, Jean-marc.
Le bassin conchylicole de Marennes-Oléron assure 40 % des 100 000 tonnes d ' huîtres commercialisées annuellement en moyenne en France (20 000 emplois, 1 milliard de chiffre d'affaire) . La modélisation des équilibres qui s'établissent entre l es stocks mis en culture , et la production annuelle , réalisée par la station IFREMER de La Tremblade , a mis en évidence les résultats suivants : Lorsque la biomasse augmente : a) La production plafonne vers 40 000 tonnes pour une biomasse de l'ordre de 80 000 tonnes avec l'huître japonaise, ce qui correspond à une biomasse équivalente de 130 000 tonnes d'huîtres portugaises. b) La durée du cycle de production d'une huître de 70 g passe de 2 ans à 4 ans. c) Les mortalités courantes passent simultanément de 20 % à...
Tipo: Text Palavras-chave: Production; Ostréiculture; Biomasse; Modélisation; Marennes Oléron.
Ano: 1986 URL: http://archimer.ifremer.fr/doc/00048/15909/13338.pdf
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In situ kinetics of mercury bioaccumulation in mytilus galloprovincialis estimated by transplantation experiments ArchiMer
Casas, Stellio; Cossa, Daniel; Gonzalez, Jean-louis; Bacher, Cedric; Andral, Bruno.
Monitoring coastal contamination by trace metals pollution using mollusks bivalves as quantitative bioindicators is widely performed in many international biomonitoring programs. For this purpose, studying mercury dynamic in marine mussels is a reliable tool. In situ experiments on uptake and elimination kinetics were conducted in three Mediterranean sites, chosen on the basis of their contamination levels. Mussels were transplanted from a clean area to a highly contaminated one and then transferred back to a clean site. This approach makes it possible to define bioaccumulation factors and uptake and elimination rates consistently with the real environmental conditions.
Tipo: Text Palavras-chave: Transplantation; Heavy metals; Bioaccumulation; Mytilus galloprovincialis; Bioindicator.
Ano: 2004 URL: http://archimer.ifremer.fr/doc/2004/acte-369.pdf
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Modeling soft institutional change and the improvement of freshwater governance in the coastal zone ArchiMer
Mongruel, Remi; Prou, Jean; Balle-beganton, Johanna; Lample, Michel; Vanhoutte Brunier, Alice; Rethoret, Harold; Perez Agundez, José A.; Vernier, Françoise; Bordenave, Paul; Bacher, Cedric.
The contribution of soft institutional change to improve freshwater governance in the coastal zone will be examined. Freshwater management seeks to reduce losses due to overexploitation of the common-pool resources provided by river catchments and their associated ecosystems. Due to the complexity of the governance system, improving the performance of one coastal social-ecological system means searching for the appropriate “soft” institutional change. In the Pertuis Charentais region, increasing scarcity of freshwater in summer threatens the health of the coastal ecosystem and the sustainability of human activities, which depend on the use of natural resources. The allocation of freshwater among competing uses or concerns is a core issue for integrated...
Tipo: Text Palavras-chave: Common-pool resources; Ecosystem services; Freshwater management; Governance; Institutional arrangements.
Ano: 2011 URL: http://archimer.ifremer.fr/doc/00055/16665/14158.pdf
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Modelling spatio-temporal variability of Mytilus edulis (L.) growth by forcing a dynamic energy budget model with satellite-derived environmental data ArchiMer
Thomas, Yoann; Mazurie, Joseph; Alunno-bruscia, Marianne; Bacher, Cedric; Bouget, Jean-francois; Gohin, Francis; Pouvreau, Stephane; Struski, Caroline.
In order to assess the potential of various marine ecosystems for shellfish aquaculture and to evaluate their carrying capacities, there is a need to clarify the response of exploited species to environmental variations using robust ecophysiological models and available environmental data. For a large range of applications and comparison purposes, a non-specific approach based on ‘generic’ individual growth models offers many advantages. In this context, we simulated the response of blue mussel (Mytilus edulis L.) to the spatio-temporal fluctuations of the environment in Mont Saint-Michel Bay (North Brittany) by forcing a generic growth model based on Dynamic Energy Budgets with satellite-derived environmental data (i.e. temperature and food). After a...
Tipo: Text Palavras-chave: Mussel; DEB; SeaWifs; Aquaculture; Site Selection; Resource Management.
Ano: 2011 URL: http://archimer.ifremer.fr/doc/00037/14836/14537.pdf
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Etude de la capacité trophique du bassin de Marennes-Oléron: Utilisation d'un modèle couplé de transport particulaire et de croissance de l'huître Crassostra gigas ArchiMer
Bacher, Cedric.
The interrelationship between the amount of oysters Crassostrea gigas and their scope for growth in the Bay of Marennes-Oleron is studied through a mathematical model. lndividual growth results from the difference between assimilation and respiration , which are related to weight, temperature, seston and available food in the water height. The water height is supposed to be well mixed vertically and biodeposition instantaneously recycled. Besides, an advection-dispersion model allows to predict the food and mineral transport. lt is based on a box structure applied to the oyster production area. The parameters are evaluated from eulerian currents averaged over the tide, tidal excursion and distance between box centers. The more important competitors are...
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Ano: 1989 URL: http://archimer.ifremer.fr/doc/00441/55212/56682.pdf
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Comparaison des relations trophiques de Ruditapes philippinarum en milieux estuarien et océanique à partir d'un modèle de croissance ArchiMer
Bacher, Cedric; Goulletquer, Philippe.
A comparison of trophic relationships for Ruditapes philippinarum in estuarine and oceanic areas: the use of a growth mode!. Trophic relationships in Ruditapes philippinarum were studied in estuarine and oceanic areas of Marennes-Oleron during 1985 and 1986. Principal components analysis (P.C.A.) was used to reveal the fluctuations of the descriptors from the principal axes. Changes in dry weight were predicted in each area through an allometric growth model and were related to the principal axes derived from the P.C.A. The results of the model were used to compare the growth in each area and to point out the descriptors responsible for the discrepancies, such as autumnal blooms or silt resuspension. Attention was paid to the sampling strategy related to...
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Ano: 1989 URL: http://archimer.ifremer.fr/doc/1989/publication-2884.pdf
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Assessing phytoplankton realized niches using a French National Phytoplankton Monitoring Network ArchiMer
Hernandez Farinas, Tania; Bacher, Cedric; Soudant, Dominique; Belin, Catherine; Barille, Laurent.
Relating environmental factors to species occurrence is a fundamental step in a better understanding of the community structure, the spatial and temporal dynamics of populations and how species may respond to environmental changes. In this paper, we used phytoplankton occurrence data, from a French national phytoplankton monitoring network, and environmental variables with the aim of characterizing the realized ecological niches of phytoplankton groups. We selected 35 phytoplankton taxa representing the most important taxa in terms of occurrence frequency and abundance along the French coast of the eastern English Channel, the Southern Bight of the North Sea and the Atlantic Ocean. We show that environmental variables such as nutrient concentration, water...
Tipo: Text Palavras-chave: Phytoplankton; Environment; Niche position; Tolerance; Kernel density; Outlying mean index.
Ano: 2015 URL: https://archimer.ifremer.fr/doc/00255/36627/35263.pdf
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Capacité trophique du bassin de Marennes-Oléron : couplage d'un modèle de transport particulaire et d'un modèle de croissance de l'huître Crassostrea gigas ArchiMer
Bacher, Cedric.
The trophic relationship between a population of cultivated oysters and potential food was modeled in Marennes-Oleron Bay. Coupling the transport process of particulate matter with assimilation by a population of oysters was achieved through a box mode!. Transport between boxes was based on a mass conservation equation. Parameters were derived from volumes of the boxes, tidal movements and residual 110ws between boxes, and were computed from a numerical hydrodynamical model. Consumption, assimilation and respiration terms were put into an energetic budget equation which enabled simulation of growth. A result of the model was the variability of growth along an axis from North to South, which was related to the oysters' accumulated consumption of food....
Tipo: Text Palavras-chave: Marennes Oleron Bay; Growth; Energetic budget; Crassostrea gigas; Trophic capacity; Box model; Marennes Oléron; Croissance; Bilan énergétique; Crassostrea gigas; Capacité trophique; Modèle en boîtes.
Ano: 1989 URL: http://archimer.ifremer.fr/doc/1989/publication-2882.pdf
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Modelling the spatial heterogeneity of ecological processes in an intertidal estuarine bay: dynamic interactions between bivalves and phytoplankton ArchiMer
Grangere, Karine; Lefebvre, Sebastien; Bacher, Cedric; Cugier, Philippe; Menesguen, Alain.
Spatial patterns in ecological communities result from a combination of physical and biological factors. In an estuarine intertidal bay, spatial differences have been found in the structure of phytoplanktonic communities and in the biological performance of cultivated oysters. It has been hypothesised that trophic heterogeneity exists, although the mechanisms controlling it remain undefined. Spatial and temporal interactions in the structure of phytoplanktonic biomass and in the biological performance of cultivated oysters were highlighted in this estuarine intertidal bay using a 2-dimensional hydrodynamic model coupled to a nutrient-phytoplankton-zooplankton bivalve food web model. The coupled models allowed a reproduction in space and time of variations...
Tipo: Text Palavras-chave: Spatial heterogeneity; Hydrodynamics; Ecosystem model; Food supply; Bivalves; Dynamic energy budget model; Physiological status; Baie des Veys.
Ano: 2010 URL: http://archimer.ifremer.fr/doc/00017/12854/9819.pdf
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Les caractéristiques hydrologiques de l'atoll de Takapoto et sur la croissance de Pinctada margaritifera (huître perlière) en élevage. ArchiMer
Prou, Jean; Geairon, Philippe; Bacher, Cedric.
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Ano: 1993 URL: http://archimer.ifremer.fr/doc/00389/50059/50647.pdf
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The influence of sediment cohesiveness on bioturbation effects due to Hydrobia ulvae on the initial erosion of intertidal sediments: A study combining flume and model approaches ArchiMer
Orvain, F; Sauriau, Pierre-guy; Bacher, Cedric; Prineau, Michel.
Laboratory experiments performed in a recirculating flume were designed to quantify the bioturbation influence of the mud snail Hydrobia ulvae, one of the most abundant deposit feeders on European intertidal mudflats. Variations in sediment moisture content that occur between bedforms in shore-normal, ridge and runnel systems of intertidal mudflats were added to the model definition. Sediment erosion thresholds, erosion rates and the microalgal pigment composition of resuspended material were quantified for different H. ulvae densities (0, 1000, 5000, 10 000 and 50 000 snails m(-2)) and applied bed shear stresses. Two different sediment moisture contents were tested. In the absence of macrofauna, recorded turbidities increased up to the maximum applied...
Tipo: Text Palavras-chave: Model; Flume; Chloropigments; Ridges and tunnels; Mudflat; Sediment; Hydrobia ulvae; Bioturbation; Resuspension.
Ano: 2006 URL: http://archimer.ifremer.fr/doc/2006/publication-3774.pdf
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Contribution of benthic microalgae to the temporal variation in phytoplankton assemblages in a macrotidal system ArchiMer
Hernandez Farinas, Tania; Ribeiro, Lourenco; Soudant, Dominique; Belin, Catherine; Bacher, Cedric; Lampert, Luis; Barille, Laurent.
Suspended marine benthic microalgae in the water column reflect the close relationship between the benthic and pelagic components of coastal ecosystems. In this study, a 12-year phytoplankton time-series was used to investigate the contribution of benthic microalgae to the pelagic system at a site along the French-Atlantic coast. Furthermore, all taxa identified were allocated into different growth forms in order to study their seasonal patterns. The highest contribution of benthic microalgae was observed during the winter period, reaching up to 60% of the carbon biomass in the water column. The haptobenthic growth form showed the highest contribution in terms of biomass, dominant in the fall-winter period when the turbidity and the river flow were high....
Tipo: Text Palavras-chave: Co-inertia; Dynamic linear models; Epipelon; Epiphyton; Haptobenthos; Microphytobenthos growth forms; Seasonality; Tychoplankton.
Ano: 2017 URL: http://archimer.ifremer.fr/doc/00392/50345/51035.pdf
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Individual-based simulation of the spatial and temporal dynamics of macroinvertebrate functional groups provides insights into benthic community assembly mechanisms ArchiMer
Alexandridis, Nikolaos; Bacher, Cedric; Desroy, Nicolas; Jean, Fred.
The complexity and scales of the processes that shape communities of marine benthic macroinvertebrates has limited our understanding of their assembly mechanisms and the potential to make projections of their spatial and temporal dynamics. Individual-based models can shed light on community assembly mechanisms, by allowing observed spatiotemporal patterns to emerge from first principles about the modeled organisms. Previous work in the Rance estuary (Brittany, France) revealed the principal functional components of its benthic macroinvertebrate communities and derived a set of functional relationships between them. These elements were combined here for the development of a dynamic and spatially explicit model that operates at two spatial scales. At the...
Tipo: Text Palavras-chave: Individual-based model; Inter-scale modeling; Functional groups; Benthic macroinvertebrates; Community assembly; Biological traits; Biotic interactions; Alpha-diversity; Beta-diversity; Rance estuary.
Ano: 2018 URL: https://archimer.ifremer.fr/doc/00445/55654/57319.pdf
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Modélisation des écosystèmes conchylicoles : bassin de Marennes-Oléron - Rapport de fin de Contrat ArchiMer
Heral, Maurice; Bacher, Cedric; Razet, Daniel; Prou, Jean; Deslous-paoli, Jean-marc; De Pontual, Helene; Raillard, Olivier; Ravail, Brigitte; Maestrini, Serge; Mornet, Francoise; Menesguen, Alain; Sautour, Benoit; Robert, Jean-michel.
Les termes du contrat passé entre le Fond de la Recherche et de la Technologie et l'IFREMER précisent qu ele programmer a pour objectif une gestion rationnelle du milieu conchylicole avec notamment une mise au point de modèles (voir notification de l'aide en annexe). Un premier modèle appelé modèle global par analogie avec les modèles de pêche met en évidence la limite de la capacité trophique du bassin de Marennes-Oléron pour les huîtres cultivées. Un modèle analytique avec un modèle physique simple permet dans un premier temps de développer un modèle de croissance des huîtres en fonction de la nourriture disponible et d'effectuer des simulations qui confirment l'influence du stock sur les performances de croissance des bivalves. Un troisième approche...
Tipo: Text Palavras-chave: Modélisation; Production; Biomasse; Huîtres creuses; Crassostrea gigas; Capacité biotique; Bassin de Marennes Oléron.
Ano: 1989 URL: http://archimer.ifremer.fr/doc/00048/15904/13332.pdf
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