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Spatially balanced sampling designs for environmental surveys ArchiMer
Kermorvant, Claire; D’amico, Frank; Bru, Noëlle; Caill-milly, Nathalie; Robertson, Blair.
Some environmental studies use non-probabilistic sampling designs to draw samples from spatially distributed populations. Unfortunately, these samples can be difficult to analyse statistically and can give biased estimates of population characteristics. Spatially balanced sampling designs are probabilistic designs that spread the sampling effort evenly over the resource. These designs are particularly useful for environmental sampling because they produce good-sample coverage over the resource, they have precise design-based estimators and they can potentially reduce the sampling cost. The most popular spatially balanced design is Generalized Random Tessellation Stratified (GRTS), which has many desirable features including a spatially balanced sample,...
Tipo: Text Palavras-chave: BAS; GRTS; LPM; Probabilistic sampling; Spatially balanced.
Ano: 2019 URL: https://archimer.ifremer.fr/doc/00509/62063/66268.pdf
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The Manila clam population in Arcachon Bay (SW France): Can it be kept sustainable? ArchiMer
Dang, Cecile; De Montaudouin, Xavier; Gam, Meriame; Paroissin, Christian; Bru, Noelle; Caill-milly, Nathalie.
The venerid clam Ruditapes philippinarum is the most prominent suspension-feeding bivalve inhabiting muddy intertidal seagrass beds in Arcachon Bay (SW France). It is exploited by fishermen, and Arcachon Bay ranks number one in France in terms of production and total biomass of this species. Previous studies revealed a decrease in the standing stock of R. philippinarum since 2003 and unbalanced length-frequency distributions with a lack of juveniles and of adults >40 mm. Consequently, the population dynamics of this bivalve were studied at four intertidal sites and one oceanic site in Arcachon Bay. As clam size structure did not allow classical dynamics computations. field monitoring was coupled with field experiments (tagging-recapture) over two years....
Tipo: Text Palavras-chave: Manila Clam; Ruditapes philippinarum; Growth; Mortality; Reproduction; Population Dynamic; Production; Productivity.
Ano: 2010 URL: http://archimer.ifremer.fr/doc/00002/11292/7990.pdf
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Avis concernant le protocole de suivi environnemental du chantier de reconstruction du quai Castel amont situé sur le port de Bayonne ArchiMer
Caill-milly, Nathalie; De Casamajor, Marie-noelle; Auby, Isabelle; Trut, Gilles; Kantin, Roger.
Tipo: Text
Ano: 2013 URL: https://archimer.ifremer.fr/doc/00175/28607/79237.pdf
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Update of striped red mullet abundance indices from professional fishing data (2016-2018) ArchiMer
Caill-milly, Nathalie; Lissardy, Muriel; Bru, Noëlle.
The ROMELIGO project included a proposal of abundance indicators for mur-west stock using professional fishing data. The methodolgy is based on the selection of samples of representative vessels grouped in clusters with the same technical characteristics, taking into account their LPUE for specifed period and area. The analysis was conducted on an historical dataset from 2005 to 2015. To be able to update it, conditional decision trees were used to find rules to assign any new vessels to one of the predefined OTB or GNS clusters. Then, the trends of LPUE on the overall period were considered. For OTB, the number of uses shows little variation during the period. In recent years, the LPUEs calculated for the Bay of Biscay show low levels compared to the...
Tipo: Text
Ano: 2020 URL: https://archimer.ifremer.fr/doc/00683/79516/82170.pdf
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Campagne d’évaluation du stock de palourdes du bassin d’Arcachon. Année 2018 ArchiMer
Sanchez, Florence; Caill-milly, Nathalie; Lissardy, Muriel.
This report details the results of clam stock assessment survey, which took place between 14 May and 17 June 2018 in Arcachon Bay. Co-organized with CDPMEM33, with financial support from DLAL FEAMP Arcachon Basin Val de l'Eyre, Nouvelle-Aquitaine region, the CDPMEM33 and Ifremer, the clam stock assessment and its characteristics were provided. The samples were collected from 533 sampling stations distributed over an area of 52 km², with an Hamon grab, using a generalized random tessellation stratified spatially balanced design (GRTS). Venerupis philippinarum remains the dominant species with 99 % of the population. The size distribution of Manila clam is in the range 5 – 41 mm with a main mode around 24-28 mm. In 2018, the mean densities are 39 individuals...
Tipo: Text Palavras-chave: Évaluation de stock; Palourde japonaise; Venerupis philippinarum; Bassin d’Arcachon Key words: stock assessment; Manila clam; Venerupis philippinarum; Arcachon Bay.
Ano: 2018 URL: https://archimer.ifremer.fr/doc/00477/58897/61456.pdf
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Bassin Adour-Garonne : hydrologie et phytoplancton – Résultats 2013-2018 ArchiMer
Auby, Isabelle; D'Amico, Florence; Meteigner, Claire; Rumebe, Myriam; Tournaire, Marie-pierre; Rigouin, Loic; Gouriou, Laure; Lissardy, Muriel; Sanchez, Florence; De Casamajor, Marie-noelle; Morandeau, Gilles; Ganthy, Florian; Trut, Gilles; Trut, Florence; Caill-milly, Nathalie; Oger-jeanneret, Helene; Guesdon, Stephane; Chabirand, Jean-michel; Morin, Dimitri; Piraud, Aude; Geairon, Philippe; Grizon, James; Seugnet, Jean-luc; Thomas, Gerard; Bruneau, Audrey; Soudant, Dominique; Gautier, Emeric; Michel, Valérie; Dupin, Michel.
Ce rapport rend compte des résultats sur les paramètres hydrologiques et le phytoplancton acquis dans le cadre de la DCE (contrôle de surveillance entre 2013 et 2018), dans les masses d’eau côtières et de transition du bassin Adour-Garonne
Tipo: Text Palavras-chave: Directive Cadre sur l’Eau; Hydrologie; Phytoplancton.
Ano: 2019 URL: https://archimer.ifremer.fr/doc/00516/62735/67113.pdf
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Shell Shape Analysis and Spatial Allometry Patterns of Manila Clam (Ruditapes philippinarum) in a Mesotidal Coastal Lagoon ArchiMer
Caill-milly, Nathalie; Bru, Noelle; Mahe, Kelig; Borie, Catherine; D'Amico, Franck.
While gradual allometric changes of shells are intrinsically driven by genotype, morphometrical shifts can also be modulated by local environmental conditions. Consequently the common use of a unique dimension (usually length) to assess bivalves’ growth may mask phenotypic differences in valve shape among populations. A morphometric exhaustive study was conducted on Manila clam, Ruditapes philippinarum, by acquiring data in the French Arcachon Bay (intrasite phenotypic variability) and by comparing with other sites in the literature (intersite phenotypic variability). 2070 shells were subsampled, weighted, and automatically measured using TNPC software. Some ratios’ values indicate a relatively round and globular shape shell in comparison with other sites...
Tipo: Text
Ano: 2012 URL: https://archimer.ifremer.fr/doc/00116/22684/20420.pdf
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Biodiversity and distribution of bivalves on the Aquitain coast (Bay of Biscay, France) ArchiMer
De Casamajor, Marie-noelle; Caill-milly, Nathalie; Morandeau, Gilles; Lissardy, Muriel.
Tipo: Text Palavras-chave: Bivalves; Bathymetric distribution; Sedimentation; Exploitation; Aquitaine.
Ano: 2010 URL: http://archimer.ifremer.fr/doc/00066/17727/15235.pdf
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La petite pêche en Aquitaine - le bassin d'Arcachon - Halieutique, socio-économie, usages et réglementations. 1999-2000 ArchiMer
Caill-milly, Nathalie; Leaute, Jean-pierre; Trouillet, Brice; Laborde, Jean-louis; Goumy, Cécilia; Prouzet, Patrick; Grandpierre, Alde; Lissardy, Muriel; Corlay, Jean-pierre.
Introduction : Intra-basin fishing is not grasped as well, partly because of a lack of distinction between pure professional fishing units and conchological units and on the other hand because of the large amount of ships. Poorly adapted codification of the equipment found in the basin is also contributing to this lack of information. Studies on the subject do exist, but the elements necessary to publish notices are not always gathered, this is leading to the proposal of a geographical systemic analysis on the basin. The steps that are being taken are complementing the development of the Geographical Information System already in place in the basin since 1993 through DEL at the Arcachon Ifremer as well as the PECOSUDE European study ¿ caractéristiques des...
Tipo: Text Palavras-chave: Uses; Regulation; Economy; Halieutics; Basin of Arcachon; Fishing; Usages; Réglementation; Economie; Halieutique; Bassin d'Arcachon; Pêche.
Ano: 2001 URL: https://archimer.ifremer.fr/doc/2001/rapport-1660.pdf
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Étude prospective de l'exploitation des coquillages au large des côtes d'Aquitaine Volet : Ressources et première approche économique ArchiMer
Caill-milly, Nathalie; Duclercq, Benoit; Morandeau, Gilles; De Casamajor, Marie-noelle.
Introduction: With the objective of diversifying current fishing and at the request of professionals in Aquitaine, the Regional Commission of Maritime Fishing and Marine Breeding (CRPMEM) of Aquitaine has started a discussion about the possibilities of opening a shellfishery. In the context of this course of action, and because of the absence of information on the presence and size of the resource, the CRPMEM of Aquitaine asked IFREMER's Halieutic Resources Laboratory of Aquitaine (LRHA) for assistance in acquiring information on the subject. At the same time, a prospective analysis study of the exploitation of shellfish off the coast of Aquitaine—regulation and business section—was performed by the CRPMEM of Aquitaine (Coiffec, 2006). At that same time,...
Tipo: Text Palavras-chave: France; North east atlantic; Aquitaine coasts; Fleet; Geographical zones; Sampling; Bivalvia; Shellfish fisheries.
Ano: 2006 URL: http://archimer.ifremer.fr/doc/2006/rapport-2217.pdf
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Les petites pêches côtières et estuariennes Françaises du sud du golfe de Gascogne. Typologie des flottilles et approche socio-économique et commerciale ArchiMer
Leaute, Jean-pierre; Caill-milly, Nathalie.
The European contract PECOSUDE (Small inshore fisheries of the south of Europe) accepted in 2000 for 2 years concerns French, Spanish and Portuguese partners. The aim is to assess the inshore and estuarine fisheries from Loire estuary to Portugal. Three levels of study are considered : fisheries (data 1999), socioeconomy and marketing (data 1999 or 2000). Exploitation in the 12 miles area for France and on continental shelf for northern Spain and Portugal (within 1000 m depth), as well as the fishing period lower than 96 hours was determined as the definition of this fishery for the study. Socioeconomic analyses are made only on boats smaller than 15 m. The fisheries part analyses the activity of the fishing vessels taking into account gears used, landed...
Tipo: Text Palavras-chave: Commercialisation; Indicateur économique; Pêcherie; Flottille de pêche côtière et estuarienne; Enquête socio économique; Typologie; Golfe de Gascogne; Marketing; Economic indicator; Fishery; Coastal and estuarine fishing fleet; Socioeconomic inquirie; Typology; Bay of Biscay.
Ano: 2003 URL: http://archimer.ifremer.fr/doc/2003/rapport-1572.pdf
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Asari clam (Ruditapes philippinarum) in France: history of an exotic species 1972 – 2015 ArchiMer
De Montaudouin, Xavier; Arzul, Isabelle; Caill-milly, Nathalie; Khayati, Alice; Labrousse, Jean-michel; Lafitte, Céline; Paillard, Christine; Soudant, Philippe; Goulletquer, Philippe.
In 1972, France underwent an oyster (Crassostrea angulata) crisis and urgently needed to diversify its aquaculture. Thus, Asari clam (Ruditapes philippinarum) was introduced at that time for aquaculture purpose, concomitantly with the introduction of Pacific oyster (Crassostrea gigas). All Asari clam adults and spat originated from the same area (Puget Sound, WA, USA). After a promising start and the implementation of a national Research & Development program, Asari clam culture rapidly faced a series of concomitant handicaps: firstly, in spite the fact that cultural practices were optimized and locking points addressed, leasing ground availability was limited during the 1980s’ due to certain reluctance from oyster farmers to share their leases and/or...
Tipo: Text Palavras-chave: Ruditapes philippinarum; France; Aquaculture; Professional fishing; Diseases; Environmental stressors.
Ano: 2016 URL: http://archimer.ifremer.fr/doc/00366/47767/47817.pdf
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A methodology based on data filtering to identify reference fleets to account for the abundance of fish species: Application to the Striped red mullet (Mullus surmulletus) in the Bay of Biscay ArchiMer
Caill-milly, Nathalie; Lissardy, Muriel; Bru, Noëlle; Dutertre, Marie-adèle; Saguet, Cassandre.
For data-limited stocks (DLS), professional fishing data can be used as a potential source of information, especially in the absence of appropriate scientific survey, to understand abundance evolution under realistic hypothesis on resource catchability. This work focuses on a data-filtering approach, the selected fishing effort must reflect vessel activity that is least dependent on their technical characteristics and as stable as possible over time. The variable of interest is landing by fishing sequence (landing for a given gear, gear mesh, day and ICES statistical rectangle) called LPUE. In order to account for the abundance of the species, it was necessary to consider the discards. The method thus proceeds in 4 steps: (i) focus on LPUE variability and...
Tipo: Text Palavras-chave: Data-limited stock; Commercial data; Discards; LPUE; Professional knowledge; Data filtering.
Ano: 2019 URL: https://archimer.ifremer.fr/doc/00503/61495/65305.pdf
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Improvement of the fishery knowledge of striped red mullet of the Bay of Biscay ArchiMer
Caill-milly, Nathalie; Lissardy, Muriel; Leaute, Jean-pierre.
Striped red mullet (Mullus surmuletus) belongs to the species for which individualization of stocks is advanced by ICES in western Europe for areas including the Bay of Biscay and the areas bordering the Iberian peninsula. Since 2012, ICES has provided recommendations with regards to this stock. These recommendations are given for two years and are based on an approach adopted by ICES in 2012 in the case of insufficient data for an analytical evaluation (Data Limited Stocks, DLS). For 2013 and 2014, ICES advice consisted in a 20% reduction in catches (average of the last 3 years:- 2009-2011) as a precautionary measure. Since that, no new advice has been formulated, the advice remains the same. Considering the impacts of such measurements on the French...
Tipo: Text
Ano: 2017 URL: http://archimer.ifremer.fr/doc/00399/51057/52225.pdf
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Update of pollack abundance indices from professional fishing data (2016-2018) ArchiMer
Caill-milly, Nathalie; Lissardy, Muriel; Bru, Noelle.
The ROMELIGO project included a proposal of abundance indicators for pol-89a stock using professional fishing data. The methodolgy is based on the selection of a sample of representative vessels grouped in a cluster with the same technical characteristics, taking into account their LPUE for specifed period and area. The analysis was conducted on an historical dataset from 2005 to 2015. To be able to update it, a conditional decision tree was used to find rules to assign any new vessels to one of the predefined GNS clusters. Then, the trends of LPUE on the overall period were considered: for the past three years, the LPUEs display low levels compared to the whole series while the highest levels were observed between 2011 and 2015. No management measure...
Tipo: Text
Ano: 2020 URL: https://archimer.ifremer.fr/doc/00631/74351/74006.pdf
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Sequential process to choose efficient sampling design based on partial prior information data and simulations ArchiMer
Kermorvant, Claire; Coube, Sébastien; D’amico, Frank; Bru, Noëlle; Caill-milly, Nathalie.
Issues on sampling procedure definition led numerous study results to be biased and object of controversy. Choosing relevant sampling design and number of samples is a difficult task when wanted to set up or optimize a survey. The survey design choice is very important to avoid bias and increase the survey cost-efficiency. It can have a strong effect on the sample size needed to achieve some targeted accuracy on results. And on the final cost of the procedure. The sequential process we expose here melt design based and model based sampling theories. Its objectives is helping practitioners defining a sampling design and a number of samples for their survey when inference to the whole population is wanted. The main idea is to mathematically reconstruct the...
Tipo: Text Palavras-chave: Accuracy; Cost-effectiveness; Survey; Simulations; Survey optimization; Virtual ecology.
Ano: 2020 URL: https://archimer.ifremer.fr/doc/00619/73140/72306.pdf
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Observation des ressources halieutiques par les campagnes scientifiques françaises. Façades "Bretagne" et "Sud-Gascogne" ArchiMer
Talidec, Catherine; Augris, Claude; Rouyer, Armelle; Brind'Amour, Anik; Pitel-roudaut, Mathilde; Tanguy, Nina; Woillez, Mathieu; Caill-milly, Nathalie; De Casamajor, Marie-noelle; Simplet, Laure.
Ce rapport relatif aux ressources halieutiques présente la répartition spatiale des espèces halieutiques provenant de campagnes scientifiques de l'Ifremer. Il propose une nouvelle présentation des données par rapport à la précédente étude (2005) relative aux façades « Manche-Est » et « Loire-Gironde » : La 1ère partie du rapport concerne les façades « Bretagne » et « Sud Gascogne » La 2ème partie du rapport traite de l’ensemble de la Manche et de l’Atlantique, grâce à la mise à jour et à la standardisation de la méthodologie pour toutes les zones, englobant ainsi les 4 façades.
Tipo: Text
Ano: 2013 URL: http://archimer.ifremer.fr/doc/00189/30006/28486.pdf
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BELARA – « oBservations en mEr pour Le diAgnostic socio-économique NatuRa 2000 "Mer et LittorAl" » - Contribution au diagnostic socio-économique des sites Natura 2000 en mer « Côte basque rocheuse et extension au large » et littoraux « Domaine d’Abbadia et corniche basque », « Falaises de Saint-Jean-de-Luz à Biarritz » et « Rochers de Biarritz : le Bouccalot et la Roche ronde », par des embarquements et des enquêtes auprès des pêcheurs professionnels. ArchiMer
Morandeau, Gilles; Caill-milly, Nathalie; Sanchez, Florence; Degremont, Isabelle; Bouisset, Christine.
Le présent document concerne le résultat des travaux confiés à l'IFREMER et à l'UPPA sur l'usage "pêche professionnelle". Il s'appuie sur des observations en mer à bord de navires de pêche (IFREMER/LRHA) et sur des enquêtes de perception de la démarche Natura 2000 (UPPA/SET) auprès de pêcheurs professionnels et de leurs représentants. Elles concernent le site Natura 2000 « Côte basque rocheuse et extension au large » (FR7200813).
Tipo: Text
Ano: 2013 URL: http://archimer.ifremer.fr/doc/00187/29863/28314.pdf
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Reference fleets identification by LPUE data filtering applied to the striped red mullet (Mullus surmulletus) in the Bay of Biscay ArchiMer
Caill-milly, Nathalie; Lissardy, Muriel; Bru, Noelle; Dutertre, Marie-adèle; Saguet, Cassandre.
The striped red mullet (Mullus surmuletus) is a species for which ICES advances individualization of stocks in Western Europe. One of them concerns the Bay of Biscay, the waters bordering the Iberian Peninsula as well as the Celtic Sea, namely striped red mullet in Subareas and Divisions 6, 7a-c, e-k, 8, and 9a (Mur. 27.67a it-k89a). This stock is part of the Data Limited Stocks (DLS) and is currently classified in Category 5 (ICES, 2016); it is a stock for which only landings data are available. Such knowledge is insufficient to apply the ICES MSY approach and the advice rule on fishing possibilities is therefore based on the precautionary approach. For this stock, this approach is applied since 2012. For 2013 and 2014, ICES has recommended reducing...
Tipo: Text
Ano: 2018 URL: https://archimer.ifremer.fr/doc/00466/57750/60015.pdf
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New Integrated Framework to grasp transforming Science-Politics 'coupling pratices'. Participatoty European coastal & marine water management ArchiMer
Carter, Caitriona; Thomas, Arnaud; Salles, Denis; Caill-milly, Nathalie; Morandeau, Gilles; Auby, Isabelle; Oger-jeanneret, Helene.
Tipo: Text
Ano: 2016 URL: http://archimer.ifremer.fr/doc/00352/46302/45958.pdf
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