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Influence of temperature, pH and NaCl concentration on the maximal growth rate of Brochothrix thermosphacta and a bioprotective bacteria Lactococcus piscium CNCM I-4031 ArchiMer
Leroi, Francoise; Fall, Papa-abdoulaye; Pilet, Marie-france; Chevalier, Frederique; Baron, Regis.
The maximum specific growth rate (μmax) of Brochothrix thermosphacta, a spoilage bacteria of cooked peeled shrimp, and Lactococcus piscium CNCM I-4031, a bioprotective strain, was investigated under different conditions of temperature, NaCl concentrations and pH. The basic modelling approach used was the Gamma concept (γ-concept) and the model developed was then adapted to shrimp. Cardinal growth parameters were quite similar for the two strains, except for NaCl. No NaCl was required for growth and the NaClmax was three-times higher for B. thermosphacta than for L. piscium (62 and 23 g l−1 respectively). However, tolerance to NaCl was higher in seafood than in liquid broth, possibly due to presence of osmoltically active molecules. L. piscium and B....
Tipo: Text Palavras-chave: Modelling; Biopreservation; Shrimp; Lactic acid bacteria; Brochothrix thermosphacta; Spoilage bacteria; Environmental conditions.
Ano: 2012 URL: http://archimer.ifremer.fr/doc/00083/19473/17088.pdf
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The quest for seafloor macrolitter: a critical review of background knowledge, current methods and future prospects ArchiMer
Canals, Miquel; Pham, Christopher K.; Bergmann, Melanie; Gutow, Lars; Hanke, Georg; Van Sebille, Erik; Angiolillo, Michela; Buhl-mortensen, Lene; Cau, Alessando; Ioakeimidis, Christos; Kammann, Ulrike; Lundsten, Lonny; Papatheodorou, George; Purser, Autun; Sanchez-vidal, Anna; Schulz, Marcus; Vinci, Matteo; Chiba, Sanae; Galgani, Francois; Langenkämper, Daniel; Möller, Tiia; Nattkemper, Tim W.; Ruiz, Marta; Suikkanen, Sanna; Woodall, Lucy; Fakiris, Elias; Molina Jack, Maria Eugenia; Giorgetti, Alessandra.
The seafloor covers some 70% of the Earth's surface and has been recognized as a major sink for marine litter. Still, litter on the seafloor is the least investigated fraction of marine litter, which is not surprising as most of it lies in the deep sea, i.e. the least explored ecosystem. Although marine litter is considered a major threat for the oceans, monitoring frameworks are still being set up. This paper reviews current knowledge and methods, identifies existing needs, and points to future developments that are required to address the estimation of seafloor macrolitter. It provides background knowledge and conveys the views and thoughts of scientific experts on seafloor marine litter offering a review of monitoring and ocean modeling techniques....
Tipo: Text Palavras-chave: Seafloor; Marine litter; Trawl surveys; Visual surveys; Deep sea; Modelling; Data harmonisation.
Ano: 2021 URL: https://archimer.ifremer.fr/doc/00657/76947/78156.pdf
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Optimisation des conditions hydrobiologiques pour la conservation de l'huître creuse Crassostrea gigas en système re-circulé ArchiMer
Buzin, Florence.
The maintenance of bivalve commercialisation du ring periods when sales are prohibited represents a major economic issue for shellfish-farming. To ensure their survival and to preserve the oyster Crassostrea gigas quality, their storage in land-based systems has been studied i) out of water in a cold room at 3°C with controlled humidity, enabling the bivalve sensory quality to be retained for 15 days, and ii) in recirculating systems in immersed conditions for 30 days. For the latter, the oysters were stored at 167 kg.m3 density in a tank equipped with an air-lift system, with water treated with UV and thermoregulated. A minimum of food was supplied to avoid mass tissue loss. A temperature of 16°C was defined as optimal to limit mortality and to avoid...
Tipo: Text Palavras-chave: Crassostrea gigas; Huître Pacifique; Système re-circulé; Ecophysiologie; Sauvegarde; Modélisation; Crassostrea gigas; Pacific oyster; Recirculating system; Ecophysiology; Safeguard; Modelling.
Ano: 2011 URL: http://archimer.ifremer.fr/doc/00092/20350/17995.pdf
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Approche de la circulation residuelle en Baie de Seine ArchiMer
Lehir, P; Salomon, J; Leprovost, C; Chabertd'Hieres, G; Mauvais, J.
By taking into account salinity measurements and consequently mean residence time, current measurements, tidal computation with a 2-D model and wind induced currents provided by a 3-D model, a global diagram of residual flow in Seine Bay is given. Main patterns are exhibited: density currents in the eastern part of the bay, off the Seine Estuary, wind induced circulation, especially along the coast and over the Channels, and tidal residual patterns induced by topography.
Tipo: Text Palavras-chave: Simulation; Modelling; Wind driven circulation; Bottom topography; Density gradients; Water masses; River discharge; Haline circulation; Salinity gradients; Tidal currents; Residual flow.
Ano: 1985 URL: http://archimer.ifremer.fr/doc/1985/acte-1263.pdf
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Modelling paralytic shellfish toxins (PST) accumulation in Crassostrea gigas by using Dynamic Energy Budgets (DEB) ArchiMer
Pousse, Emilien; Flye-sainte-marie, Jonathan; Alunno-bruscia, Marianne; Hegaret, Helene; Rannou, Eric; Pecquerie, Laure; Marques, Goncalo M.; Thomas, Yoann; Castrec, Justine; Fabioux, Caroline; Long, Marc; Lassudrie, Malwenn; Hermabessiere, Ludovic; Amzil, Zouher; Soudant, Philippe; Jean, Fred.
As other filter-feeders, Crassostrea gigas can concentrate paralytic shellfish toxins (PST) by consuming dinoflagellate phytoplankton species like Alexandrium minutum. Intake of PST in oyster tissues mainly results from feeding processes, i.e. clearance rate, pre-ingestive sorting and ingestion that are directly influenced by environmental conditions (trophic sources, temperature). This study aimed to develop a mechanistic model coupling the kinetics of PST accumulation and bioenergetics in C. gigas based on Dynamic Energy Budget (DEB) theory. For the first time, the Synthesizing Units (SU) concept was applied to formalize the feeding preference of oysters between non-toxic and toxic microalgae. Toxin intake and accumulation were both dependent on the...
Tipo: Text Palavras-chave: Alexandrium minutum; Paralytic shellfish toxins (PST); Dynamic Energy Budget (DEB); Modelling; Pacific oyster.
Ano: 2019 URL: https://archimer.ifremer.fr/doc/00455/56662/58407.pdf
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Predictive systems ecology ArchiMer
Evans, Matthew R.; Bithell, Mike; Cornell, Stephen J.; Dall, Sasha R. X.; Diaz, Sandra; Emmott, Stephen; Ernande, Bruno; Grimm, Volker; Hodgson, David J.; Lewis, Simon L.; Mace, Georgina M.; Morecroft, Michael; Moustakas, Aristides; Murphy, Eugene; Newbold, Tim; Norris, K. J.; Petchey, Owen; Smith, Matthew; Travis, Justin M. J.; Benton, Tim G..
Human societies, and their well-being, depend to a significant extent on the state of the ecosystems that surround them. These ecosystems are changing rapidly usually in response to anthropogenic changes in the environment. To determine the likely impact of environmental change on ecosystems and the best ways to manage them, it would be desirable to be able to predict their future states. We present a proposal to develop the paradigm of predictive systems ecology, explicitly to understand and predict the properties and behaviour of ecological systems. We discuss the necessary and desirable features of predictive systems ecology models. There are places where predictive systems ecology is already being practised and we summarize a range of terrestrial and...
Tipo: Text Palavras-chave: Modelling; Systems ecology; Climate change; Ecosystem assessment.
Ano: 2013 URL: http://archimer.ifremer.fr/doc/00177/28816/27291.pdf
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Ecophysiological deterministic model for Crassostrea gigas in an estuarine environment ArchiMer
Barille, Laurent; Heral, Maurice; Barilleboyer, Al.
An ecophysiological deterministic model of growth, reproduction and interactions between the bivalve and its estuarine environ ment was established for the Japanese oyster Crassostrea gigas. The environmental variables used in the model are: total particulate matter, particulate organic matter, particulate inorganic matter, chlorophyll, phaeopigments, proteins, lipids and carbohydrates. Rates of clearance, filtration, ingestion, absorption and respiration along with efficiencies of retention, selection and absorption are modelled with endogenous (dry weight of the animal, energy allocation between growth and reproduction) and exogenous variables (temperature, food quality and quantity). The model simulate the temporal evolution of two compartments: somatic...
Tipo: Text Palavras-chave: Crassoslrea gigas; Croissance; Écophysiologie; Modélisation; Turbidité; Crassostrea gigas; Ecophysiology; Growth; Modelling; Turbidity.
Ano: 1997 URL: http://archimer.ifremer.fr/doc/00038/14892/12219.pdf
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Comportement du cadmium et du mercure lors de la diagenèse précoce et flux à l'interface eau-sédiments en zone littorale ArchiMer
Gonzalez, Jean-louis.
The early diagenesis of Cd and Hg has been studied in different coastal areas (vasière Ouest-Gironde, Pertuis d'Antioche, baie de Marennes-Oléron). For these two metals, the fluxes at the sediment-water interface have been calculated. Considering only molecular diffusion, the diffusionnal fluxes of Cd and Hg to the colurnn water are negligible with regard to both the particular fluxes to the sediments and the inputs of the "Gironde" and "Charente" ·,estuaries. The take into account of the different processes which affect the ex changes at the interface (erosion, bioturbation) permits more realistic an estimation of the role of sediments in the geochemical cycle of Cd and Hg. The results show that up to 50% of particular Cd and Hg which are integrated into...
Tipo: Text Palavras-chave: Cadmium; Mercure; Eaux intrstitielles; Diagenèse précoce; Flux; Interface eaux-sédiments; Bioturbation; Modélisation; Cadmium; Mercury; Pore waters; Early diagenesis; Fluxes; Sediment-water interface; Bioturbation; Modelling.
Ano: 1992 URL: http://archimer.ifremer.fr/doc/00442/55402/56920.pdf
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The influence of variability in larval dispersal on the dynamics of a marine metapopulation in the eastern Channel ArchiMer
Ellien, Celine; Thiebaut, Éric; Barnay, Anne-sophie; Dauvin, Jean-claude; Gentil, Franck; Salomon, Jean-claude.
In the English Channel, the polychaete Pectinaria in koreni forms isolated populations confined in bays and estuaries. To determine the influence of larval dispersal variability on the observed stock fluctuations of the three major Pectinaria koreni populations reported along the French coasts of the eastern Channel, larval dispersal was simulated using a 2D hydrodynamical lagrangian model integrating both the tidal residual and the wind-driven circulation. Year-to-year fluctuations of adult stocks were established from benthic surveys carried out between 1973 and 1998. Larval dispersal patterns vary between populations according to the relative importance of tidal advection and eddy diffusion so that local larval retention is maximal where tidal advection...
Tipo: Text Palavras-chave: Pectinaria koreni; Metapopulation; Modelling; Recruitment; Larval dispersal; Pectinaria koreni; Métapopulation; Modélisation; Recrutement; Dispersion larvaire.
Ano: 2000 URL: https://archimer.ifremer.fr/doc/2000/publication-535.pdf
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Un modèle asymptotique de la plaque stratifiée ArchiMer
Kail, R; Lene, F; De Roeck, Y.
In order to calculate the behaviour of thin structures of laminated composite materials, a bidimensional plate model is generated by an asymptotic development technique. From a structural analysis by plane finite elements at the middle surface, this model yields the equations leading to the computation, at each point of the laminated material, of the displacement and the stress tensor. After describing the theoretical model, numerical results are compared with the analytical solution of a test problem.
Tipo: Text Palavras-chave: Ship technology; Modelling; Mathematical models; Composite materials; Eléments finis; Développement asymptotique; Composites; Plaque.
Ano: 1992 URL: http://archimer.ifremer.fr/doc/1992/acte-1081.pdf
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Biological and economic factors in the selection of cultured fish species and the development of a bio-economic model ArchiMer
Wu, R.
The selection of candidate species for mariculture is determined by a number of biological factors, e.g. foraging efficiency, growth efficiency, mortality, grow-out period and susceptibility to environmental fluctuations, disease and crowding, as well as economic factors e.g. the supply and price of fry, grow-out cost and price of adult. A computer model incorporating these major factors is being developed, to determine and compare the potential of different culture species.
Tipo: Text Palavras-chave: Lates calcarifer; Epinephelus tauvina; Mylio macrocephalus; Pisces; Marine fish; Tolerance; Biology; Modelling; Economic models; Diseases; Mortality; Growth; Cultured organisms.
Ano: 1989 URL: http://archimer.ifremer.fr/doc/1989/acte-1488.pdf
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Fast hydrodynamic model for medium- and long-term dispersion in seawater in the English Channel and southern North Sea, qualitative and quantitative validation by radionuclide tracers ArchiMer
Bailly Du Bois, Pascal; Dumas, Franck.
The database for medium- and long-term model validation using Sb-125 released by the La Hague reprocessing plant includes 1400 measurements performed between 1987 and 1994 in the English Channel and the North Sea and data for each release since 1982. Antimony-125 has a conservative behaviour in water masses over a period of several years. These data can be used qualitatively and quantitatively to compare the measured concentrations with the calculated ones and quantities of tracers. Tritium measurements are also available for model calibration. A two-dimensional hydrodynamic model has been developed to allow repetitive long-term simulations. This model uses a database of residual tidal currents calculated using the Lagrangian barycentric method [Salomon,...
Tipo: Text Palavras-chave: North Sea; English Channel; European Continental Shelf; Tritium; Sb 125; Radioactive tracer; Wind stress; Calibration; Modelling.
Ano: 2005 URL: http://archimer.ifremer.fr/doc/2005/publication-731.pdf
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Modélisation du transport sédimentaire et des interactions morphodynamiques par les courants de turbidité dans les canyons sous-marins. Application à la Méditerranée Occidentale ArchiMer
Payo Payo, Marta.
Turbidity currents in submarine canyons are the main contribution for sediment transfer across the continental margins. Geological studies of submarine canyons and associated turbiditic systems for more than 30 years led to an extraordinary breakthrough in the understanding of how turbidite systems evolve. However, these studies remain limited to a posteriori interpretations, based on the distribution of deposits and morphological evidences. The overarching aim of this thesis is to apply a 2DH process-based model to simulate large-scale turbidity currents on two different submarine canyons in the western Mediterranean coast.The work in La Fonera canyon, in the Catalan margin, focuses on the modelling of sediment transport and accumulation resulting from...
Tipo: Text Palavras-chave: Canyons sous-marins; Chalutage; Courants de turbidité; Forces de Coriolis; Hydrodynamique; Modélisation; Sédimentologie; Submarine canyons; Trawling; Turbidity current; Modelling; Hydrodynamics; Sedimentology; Coriolis forces.
Ano: 2016 URL: https://archimer.ifremer.fr/doc/00498/60919/64280.pdf
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Modélisation de la dynamique du microphytobenthos des vasières intertidales du bassin de Marennes-Oléron. Effets des synchroniseurs physiques sur la régulation de la production ArchiMer
Guarini, Jean-marc.
The study aimed at quantifying the spatio-temporal evolution of microphytobenthic biomass in intertidal mudflats of Marennes-Oléron Bay. To reach this goal, a dynamic model has been proposed, including processes of primary production, active migration of epipelic diatoms and biomass lasses due to mortalities on one hand and resuspension in the water column during submersion on the other hand. The spatialisation is given by a hydrodynamic madel which calculates the water height everywhere. The photic environment of microphytobenthos is described in a discrete way, by means of two layers: the biofilm of epipelic algae « S »on the top of the sediment and the fust centimeter of the mud « F ». The endogenous vertical migration rhythm of epipelic algae controls...
Tipo: Text Palavras-chave: Microphytobenthos; Vasière intetidale; Modélisation; Dynamique de la biomasse; Expérimentation; Ecophysiologie; Couplage physique/biologie; Microphytobenthos; Intertidal mudflat; Modelling; Dynamics of the biomass; Experimentation; Ecophysiology; Physics/biology coupling.
Ano: 1998 URL: http://archimer.ifremer.fr/doc/00439/55029/56462.pdf
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Getting the most out of it: Optimal experiments for parameter estimation of microalgae growth models ArchiMer
Munoz-tamayo, Rafael; Martinon, Pierre; Bougaran, Gael; Mairet, Francis; Bernard, Olivier.
Mathematical models are expected to play a pivotal role for driving microalgal production towards a profitable process of renewable energy generation. To render models of microalgae growth useful tools for prediction and process optimization, reliable parameters need to be provided. This reliability implies a careful design of experiments that can be exploited for parameter estimation. In this paper, we provide guidelines for the design of experiments with high informative content based on optimal experiment techniques to attain an accurate parameter estimation. We study a real experimental device devoted to evaluate the effect of temperature and light on microalgae growth. On the basis of a mathematical model of the experimental system, the optimal...
Tipo: Text Palavras-chave: Biofuel; Biological processes; Modelling; Parameter identification; Optimal experiment design.
Ano: 2014 URL: http://archimer.ifremer.fr/doc/00191/30252/28684.pdf
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Physiologie de la maturation et de la ponte chez l'huître creuse Crassostrea gigas ArchiMer
Soletchnik, Patrick; Geairon, Philippe; Razet, Daniel; Goulletquer, Philippe.
The physiological ecology of the Pacific oyster Crassostrea gigas was studied using a conditioning delayed by temperature. Experiments were carried out on five batches and 2 year-classes classified into 6 maturation stages. The scope for growth concerning the stages N*5 and 6 was nearly zero while positive for early stages as well as for the post-spawning stage. Moreover, the 1 year-old oysters showed a significant lowered scope for growth (-110 J/h) compared to adult oysters (-14 J/h), therefore demonstrating the increased sensitivity of young oysters to stressful environmental conditions. By comparing the experimental results with the current models, developed on immature oysters, facilitates the model parameters spécifications during gametogenesis. For...
Tipo: Text Palavras-chave: Modelling; Ecophysiology; Mortality; Crassostrea gigas; Modèle; Ecophysiologie; Mortalité; Crassostrea gigas.
Ano: 1996 URL: http://archimer.ifremer.fr/doc/1996/rapport-1643.pdf
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Dynamical contribution to sea surface salinity variations in the eastern Gulf of Guinea based on numerical modelling ArchiMer
Berger, Henrick; Treguier, Anne-marie; Perenne, Nicolas; Talandier, Claude.
In this study, we analyse the seasonal variability of the sea surface salinity (SSS) for two coastal regions of the Gulf of Guinea from 1995 to 2006 using a high resolution model (1/12°) embedded in a Tropical Atlantic (1/4°) model. Compared with observations and climatologies, our model demonstrates a good capability to reproduce the seasonal and spatial variations of the SSS and mixed layer depth. Sensitivity experiments are carried out to assess the respective impacts of precipitations and river discharge on the spatial structure and seasonal variations of the SSS in the eastern part of the Gulf of Guinea. In the Bight of Biafra, both precipitations and river runoffs are necessary to observe permanent low SSS values but the river discharge has the...
Tipo: Text Palavras-chave: Gulf of Guinea; Salinity; Modelling; Congo; Bight of Biafra; Mixed layer budget.
Ano: 2014 URL: http://archimer.ifremer.fr/doc/00194/30493/29215.pdf
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Modelling abrupt glacial North Atlantic freshening: Rates of change and their implications for Heinrich events ArchiMer
Bigg, Grant R.; Levine, Richard C.; Green, Clare L..
The abrupt delivery of large amounts of freshwater to the North Atlantic in the form of water or icebergs has been thought to lead to significant climate change, including abrupt slowing of the Atlantic Ocean meridional overturning circulation. In this paper we examine intermediate complexity coupled modelling evidence to estimate the rates of change, and recovery, in oceanic climate that would be expected for such events occurring during glacial times from likely sources around the North Atlantic and Arctic periphery. We show that rates of climate change are slower for events with a European or Arctic origin. Palaeoceanographic data are presented to consider, through the model results, the origin and likely strength of major ice-rafting, or Heinrich,...
Tipo: Text Palavras-chave: Heinrich events; Modelling; Quaternary; Icebergs.
Ano: 2011 URL: https://archimer.ifremer.fr/doc/00227/33777/82665.pdf
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Pêcherie démersale côtière au Sénégal. Essai de modélisation de la dynamique de l'exploitation des stocks OceanDocs
Institut de Recherche pour le Développement, Paris (France); Fall, Massal.
Français - Les traits essentiels de la côte sénégalaise, repères historiques de la pêche, communautés de pêcheurs, caractéristiques des flottes et modes d’accès à la ressource et d’interaction sont analysés. Les caractéristiques, tendances décroissantes de l’abondance,niveaux d’exploitation, mesures d’aménagement, relations interspécifiques, changements potentiels et sources de variation des stocks démersaux côtiers sont précisés. Les notions de tactiques et stratégies de pêche sont passées en revue, conceptualisées puis étudiées.Le modèle «Dynamique Conjointe Exploitation Ressource» utilisé repose sur la définition de 4 typologies. L’utilisation de méthodes de classification et de connaissances d’experts conduit à considérer 32 stocks, 31 strates, 82...
Tipo: Theses and Dissertations Palavras-chave: Fisheries; Demersal fisheries; Modelling; Stocks; Ecosystems; Community fishing; Inland waters; Marine water; Hydrologic cycle; Fishermen; Fishing fleet; Shrimp fisheries; Capture fisheries; Fisheries management; Trawling; Artisanal fishing; Fishing licenses.
Ano: 2009 URL: http://hdl.handle.net/1834/5004
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The effect of the Mbita Causeway on water currents in the region of Rusinga Channel, Winam Gulf, Lake Victoria: a 3D modelling study with ELCOM OceanDocs
Romero, J.R.; Khisa, P..
The Mbita Causeway in Kenya was constructed in the early 1980’s to link Rusinga Island to the mainland to facilitate the transport of people, goods, and services to the island. One of the effects of the Causeway was to permanently block a secondary connection between Rusinga Channel and the offshore waters of Lake Victoria. This secondary channel may have served as a substantial pathway of exchange between Winam Gulf and Lake Victoria prior to the Causeway. There has been considerable scientific and political debate as to whether decreased flushing within the two bays on either side of the Causeway has occurred and led to poorer lake water quality since the construction of the barrier. In Apr.-May 2005 an intensive field investigation was undertaken to...
Tipo: Proceedings Paper Palavras-chave: Hydrodynamics; Water quality; Channel flow; Development projects; Simulation; Modelling; Flushing; Environmental effects; Water currents; Inland water environment; Hydrodynamics; Http://aims.fao.org/aos/agrovoc/c_3723.
Ano: 2006 URL: http://hdl.handle.net/1834/1473
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