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Phytoplankton production in the Tagus estuary (Portugal) ArchiMer
Cabecadas, L.
Biomass and phytoplankton photosynthetic response were studied in the lower Tagus estuary weekly, and related to environmental conditions in February, March and April 1994. The Photosynthesis-Irradiance ((P-I)-I-B) relation was studied based on the light-saturated photosynthesis rate (P(B)m) and the light-limited initial slope (a(B)). The nutrient concentrations observed were high enough to be considered as not limiting phytoplankton growth. Tagus estuary phytoplankton seems, to a certain extent, adapted to high turbid conditions, being able to utilize the low light levels more efficiently, which was translated by high values of a(B) [0.10-0.20 mg C (mg Chl a)(-1) h(-1) (W m(-2))(-1)]; however, light seems to limit phytoplankton production in the water...
Tipo: Text Palavras-chave: Production primaire; Phytoplancton; Estuaire; Biomasse; Turbidité; Primary production; Phytoplankton; Estuary; Biomass; Turbidity.
Ano: 1999 URL: http://archimer.ifremer.fr/doc/00325/43621/43310.pdf
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Phytoplankton versus macrophyte contribution to primary production and biogeochemical cycles of a coastal mesotidal system. A modelling approach ArchiMer
Plus, Martin; Auby, Isabelle; Maurer, Daniele; Trut, Gilles; Del Amo, Y.; Dumas, Franck; Thouvenin, Benedicte.
This study presents an assessment of the contributions of various primary producers to the global annual production and N/P cycles of a coastal system, namely the Arcachon Bay, by means of a numerical model. This 3D model fully couples hydrodynamic with ecological processes and simulates nitrogen, silicon and phosphorus cycles as well as phytoplankton, macroalgae and seagrasses. Total annual production rates for the different components were calculated for different years (2005, 2007 and 2009) during a time period of drastic reduction in seagrass beds since 2005. The total demand of nitrogen and phosphorus was also calculated and discussed with regards to the riverine inputs. Moreover, this study presents the first estimation of particulate organic carbon...
Tipo: Text Palavras-chave: Primary production; Macrophyte; Phytoplankton; Biogeochemical cycle; Physical-ecological coupled model; Arcachon bay.
Ano: 2015 URL: http://archimer.ifremer.fr/doc/00278/38963/37503.pdf
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New insights into the seasonal feeding ecology of Pecten maximus using pigments, fatty acids and sterols analyses ArchiMer
Lavaud, Romain; Artigaud, Sebastien; Le Grand, Fabienne; Donval, Anne; Soudant, Philippe; Flye-sainte-marie, Jonathan; Strohmeier, Tore; Strand, Oivind; Leynaert, Aude; Beker, Beatriz; Chatterjee, Arnab; Jean, Fred.
We combined the use of pigments, fatty acids and sterols as biomarkers of the seasonal variation in food sources of the great scallop Pecten maximus. From March to October 2011, on a biweekly to twice-weekly basis, scallops and seawater from the water column and the water-sediment interface were collected in the Bay of Brest (Brittany, France). Pigment compositions in the seawater and in the stomach and rectum content of the scallops were analyzed by HPLC. Fatty acids and sterols from digestive gland (DG) tissue were analyzed by gas chromatography. Potential relationships between the temporal proportion of each marker in the environment and in the digestive tract were tested using multivariate analysis. Proportions of diatoms and Dinophyceae biomarkers...
Tipo: Text Palavras-chave: Trophic ecology; Food sources; Pigments; Fatty acids; Trophic marker; Phytoplankton; Pecten maximus.
Ano: 2018 URL: https://archimer.ifremer.fr/doc/00431/54244/55772.pdf
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Utilisation conjointe de FlowCAM / ZooPhytoImage et de la cytométrie en flux. Premiers résultats et perspectives. Action 9. FlowCam ZooPhytoImage. Livrable n° 4. Rapport final, 23 septembre 2014 ArchiMer
Ali, Nour; Wacquet, Guillaume; Didry, Morgane; Hamad, Denis; Artigas, Luis Felipe; Grosjean, Philippe.
The goal of this study is to investigate about the possibility of coupling measurements made by image analysis from the FlowCAM with Zoo/PhytoImage with data obtained with a flux cytometer (pulse-shape-recording Scanning Flow Cytometry) on the same samples gathered in current monitoring networks in the eastern Channel and southern North Sea. In this preliminary study, we collected a series of samples off Boulogne-sur-Mer (SRN-REPHY monitoring system run by IFREMER) and along a transect in the Baie St-Jean (Wimereux-Slack) run by LOG. All these samples were digitized with a FlowCAM and measured with a scanning flow cytometer (CytoSense). The complete analysis with the FlowCAM and Zoo/PhytoImage is detailed in the present report. In order to get a better...
Tipo: Text Palavras-chave: Manche – Mer du Nord; Phytoplancton; Analyse d'image; Classification supervisée; Cytométrie en flux; Eastern English Channel and southern North Sea; Phytoplankton; Image analysis; Machine learning; Scanning Flow Cytometry.
Ano: 2014 URL: http://archimer.ifremer.fr/doc/00363/47442/47470.pdf
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Pheopigment dynamics, zooplankton grazing rates and the autumnal ammonium peak in a Mediterranean lagoon ArchiMer
Collos, Yves; Husseini Ratrema, Julie; Bec, Béatrice; Vaquer, André; Hoai, Thong Lam; Rougier, Claude; Pons, Virginie; Souchu, Philippe.
The dilution technique was used to estimate chlorophyll and pheopigment, net and gross production as well as zooplankton grazing over a 12-month period in a coastal lagoon in Southern France. Chlorophyll a (Cha) based gross growth rates of phytoplankton ranged from undetectable in February to 2.6 day(-1) in June, corresponding to 3.8 divisions per day. Cha-based grazing rates ranged from undetectable in February to 1.1 d(-1) in June. The seasonal growth pattern of picoplankton was similar to that of the whole community, with a peak in July, corresponding to four divisions per day. Grazing processes represented from 20 to 150% of the phytoplankton daily growth, and the grazing pressure was stronger on small phytoplankton cells than on larger cells. Gross...
Tipo: Text Palavras-chave: Zooplankton; Ammonium; Pheopigments; Degradation; Growth; Phytoplankton.
Ano: 2005 URL: http://archimer.ifremer.fr/doc/2005/publication-727.pdf
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Trophic relationships between benthic or planktonic microphytes and infaunal bivalve molluscs ArchiMer
Plantecuny, M; Bodoy, Alain.
In order to estimate energetic relationship, microphytic and benthic bivalve levels of a shallow (1.5 m), sandy ecosystem near Marseille (Gulf of Fos, Southern France) were sampled monthly during 1.5 year, in two sites differing by their wave exposure. In the sheltered area, the bivalve Ruditapes decussatus was the dominant species, while another bivalve, Donax trunculus , was found in the open, wave exposed site. Chlorophyll a and primary production of the phytoplankton and the microphytobenthos, as well as population dynamic, growth and biochemical composition of bivalves (lipids, proteins and carbohydrates) were monitored.
Tipo: Text Palavras-chave: Ruditapes decussatus; Bivalvia; Periphyton; Phytoplankton; Biochemical composition; Growth; Marine molluscs; Hydrodynamics; Seasonal variations; Primary production; Trophic relationships.
Ano: 1984 URL: http://archimer.ifremer.fr/doc/1984/acte-1528.pdf
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The role of microalgae in aquaculture: situation and trends ArchiMer
Muller-feuga, Arnaud.
Algae are utilized diversely in aquaculture, but their main applications are related to nutrition. They are used in toto, as a sole component or as a food additive to supply basic nutrients, color the flesh of salmonids or for other biological activities. The need for nutritional sources safer than traditional animal products has renewed interest in plants in general and algae in particular. This report deals principally with the nutritional role of microalgae in aquaculture.The larvae of molluscs, echinoderms and crustaceans as well as the live prey of some fish larvae feed on microalgae. Though attempts have been made to substitute inert particles for these micro-organisms which are difficult to produce, concentrate and store, only shrimp and live prey...
Tipo: Text Palavras-chave: Shrimp; Post larvae; Phytoplankton; Molluscs; Microalgae; Hatchery; Fish; Aquaculture.
Ano: 2000 URL: http://archimer.ifremer.fr/doc/2000/publication-497.pdf
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Influence of shellfish farming activities on the biogeochemical composition of the water column in Thau lagoon ArchiMer
Souchu, Philippe; Vaquer A, André; Collos, Yves; Landrein, Sonia; Deslous-paoli, Jean-marc; Bibent, Bertrand.
Thau lagoon is a Mediterranean shellfish ecosystem with large biomasses of oysters growing in waters with high residence time due to low tidal ranges, The influence of filter feeders (oysters and their epibiota) on the spatial distribution of particulate and dissolved compounds in the water column of Thau lagoon was studied through its variation with time, In 1991/1992, daily variations were investigated in pens, corridors and outside shellfish farming zones for nutrients, chlorophyll a and primary production. Salinity, dissolved oxygen, nutrients, organic matter and chlorophyll a were also monitored in surface waters inside and outside shellfish farming zones each week from January 1993 to March 1994. The presence of shellfish farms led to a decrease by...
Tipo: Text Palavras-chave: Thau lagoon; Carrying capacity; Nutrient cycling; Phytoplankton; Suspension feeding bivalves.
Ano: 2001 URL: http://archimer.ifremer.fr/doc/2001/publication-808.pdf
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La surveillance des phycotoxines dans les coquillages du milieu marin. Le réseau REPHY : objectifs, stratégies, et principaux résultats ArchiMer
Belin, Catherine.
The surveillance of phycotoxins in marine shellfish. The REPHY network: objectives, strategies and primary results One of the objectives of REPHY (network for phytoplankton and phycotoxin surveillance) is to monitor toxin-producing micro-algae species in the marine environment that are likely to accumulate in seafood products, and to screen for these toxins in shellfish. This surveillance is undertaken in the framework of the European regulations. Three groups of toxins are thus monitored and are associated with three genera of toxic phytoplankton: (i) Dinophysis, a producer of the okadaic acid (with diarrhoeic effects) and pectenotoxin families of toxins; in the same group of so-called “lipophilic toxins”, two other families of regulated toxins are...
Tipo: Text Palavras-chave: Santé; Surveillance; Phytoplancton; Phycotoxines; Coquillages; Milieu marin; Health; Surveillance; Phytoplankton; Phycotoxins; Shellfish; Marine environment.
Ano: 2011 URL: http://archimer.ifremer.fr/doc/00449/56089/57623.pdf
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Validation de l’indice composition IC Medit pour les eaux côtières de Corse et de la région PACA. Action 3. Indice Composition. Livrable n° B. Rapport final, juillet 2014. ArchiMer
Goffart, Anne; Andral, Bruno.
The aim of this study is to show the current status of the development and use of the new IC Medit phytoplankton composition index as a sub-metric within the phytoplankton quality element in assessing phytoplankton quality in Mediterranean coastal waters. IC Medit uses pigment concentrations determined by HPLC for assessing phytoplankton composition. Focusing on coastal waters of Corsica, we (i) described the seasonal succession of the main phytoplankton groups in reference conditions, (ii) studied responses of phytoplankton groups to well identified drivers, (iii) assessed the shift of the seasonal succession of phytoplankton groups from the reference conditions in impacted areas, (iv) revealed pressure / impact relationships between nutrients and...
Tipo: Text Palavras-chave: Phytoplancton; Indicateur de composition; Pigments; IC Medit; Relations pressions / impacts; Conditions de référence; Méditerranée; Corse; DCE; Phytoplankton; Indicator of community composition; Pigments; IC Medit; Pressure impact relationships; Reference conditions; Mediterranean Sea; Corsica; Water Framework Directive.
Ano: 2014 URL: http://archimer.ifremer.fr/doc/00361/47261/47226.pdf
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Seston, phytoplancton et microphytobenthos en rivière d'Auray. Leur role dans le cycle biologique des huitres (Oystrea edulis L.) ArchiMer
Paulmier, Gerard.
Tipo: Text Palavras-chave: Seston; Phytoplankton; Nutrition; Oyster culture.
Ano: 1972 URL: http://archimer.ifremer.fr/doc/1972/publication-2236.pdf
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Interactions between polystyrene microplastics and marine phytoplankton lead to species-specific hetero-aggregation ArchiMer
Long, Marc; Paul-pont, Ika; Hegaret, Helene; Moriceau, Brivaela; Lambert, Christophe; Huvet, Arnaud; Soudant, Philippe.
To understand the fate and impacts of microplastics (MP) in the marine ecosystems, it is essential to investigate their interactions with phytoplankton as these may affect MP bioavailability to marine organisms as well as their fate in the water column. However, the behaviour of MP with marine phytoplanktonic cells remains little studied and thus unpredictable. The present study assessed the potential for phytoplankton cells to form hetero-aggregates with small micro-polystyrene (micro-PS) particles depending on microalgal species and physiological status. A prymnesiophycea, Tisochrysis lutea, a dinoflagellate, Heterocapsa triquetra, and a diatom, Chaetoceros neogracile, were exposed to micro-PS (2 μm diameter; 3.96 μg L−1) during their growth culture...
Tipo: Text Palavras-chave: Polystyrene; Microplastic; Aggregates; Microalgae; Marine; Phytoplankton.
Ano: 2017 URL: https://archimer.ifremer.fr/doc/00389/50016/50735.pdf
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Résultats de la mise en oeuvre des réseaux REPHY (Réseau Phytoplancton et Phycotoxines) et SRN (Suivi Régional des Nutriments). Zones côtières de la Manche orientale et de la baie sud de la Mer du Nord. Bilan de l'année 2017 ArchiMer
Lefebvre, Alain; Dussuel, Antoine.
The coastal zone of the Nord – Pas de Calais / Picardie showed dysfonctioning patterns of the ecosystem considered to be link to human activities along shores. These results in regular massive development of species, such as the phytoplanktonic seaweed, Phaeocystis sp. which life cycle was partly linked to nutrients availability and consequently to anthropogenic inputs. As part of the evaluation of the influence of continental inputs on the marine environment (nitrates, phosphates,…) and on potential eutrophication processes, of the estimation of the efficiency of the sewage treatments plants in the possible elimination of dumpings and in order to establish a long-term survey to follow up the change in coastal waters quality, the regional nutrients...
Tipo: Text Palavras-chave: Manche Orientale; Baie sud de la Mer du Nord; Hydrologie; Phytoplancton; Phaeocystis globosa; Eastern English Channel; Hydrology; Phytoplankton; Phaeocystis globosa; Southern bight of the North Sea.
Ano: 2018 URL: https://archimer.ifremer.fr/doc/00448/55949/57429.pdf
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Mesoscale surface distribution of biogeochemical characteristics in the Crozet Basin frontal zones (South Indian Ocean) ArchiMer
Fiala, M; Delille, B; Dubreuil, C; Kopczynska, E; Leblanc, K; Morvan, J; Queguiner, B; Blain, S; Cailliau, C; Conan, P; Corvaisier, R; Denis, M; Frankignoulle, M; Oriol, L; Roy, S.
A mesoscale study was conducted in January and February 1999 in the Crozet Basin frontal zones (43degrees50' to 45degrees20'S, 61degrees00' to 64degrees30'E) within the southernmost and easternmost convergence area of the Antarctic Circumpolar Current (ACC) and the Agulhas Return Current (ARC). Distribution of biogeochemical parameters was strongly linked to the merged Subtropical (STF) and Subantarctic (SAF) Fronts which mark the border between the cold and less saline subantarctic waters and the warm and more saline subtropical waters. This survey took place during a post-bloom period. Chlorophyll a concentrations were low throughout the study area ranging from 0.2 mug l(-1) in the Polar Frontal Zone (PFZ) to 0.4 mug l(-1) in the Subtropical Zone (STZ)....
Tipo: Text Palavras-chave: Frontal zones; Nutrients; Biogenic silica; Chlorophyll a; PCO(2); Phytoplankton; Bacteria.
Ano: 2003 URL: https://archimer.ifremer.fr/doc/00224/33557/31968.pdf
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Effect of local hydroclimate on phytoplankton groups in the Charente estuary ArchiMer
Guesdon, Stephane; Stachowski-haberkorn, Sabine; Lambert, Christophe; Beker, Beatriz; Brach-papa, Christophe; Auger, Dominique; Bechemin, Christian.
This study aimed to describe seasonal variations of phytoplankton abundances in relation to the physical and chemical (nutrients and metals) environment under the influence of freshwater input in the Charente river estuary (Marennes-Oléron bay, France) over three years, from 2011 to 2014. Phytoplankton abundances were determined using microscopy and flow cytometry. Considering high frequency temperature and salinity data, breakpoints in each series led to the identification of two local hydroclimatic periods: the first (2011 and early 2012) being warmer and higher in salinity than the second (from spring 2012 to the beginning of 2014). A multiblock PLS analysis highlighted the significant contribution of the physical environment (temperature, salinity and...
Tipo: Text Palavras-chave: Hydroclimate; Estuary; Phytoplankton; Size composition; Nutrients; Trace metals.
Ano: 2016 URL: https://archimer.ifremer.fr/doc/00349/46005/45674.pdf
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Restoration ecology of coastal lagoons: new methods for the prediction of ecological trajectories and economic valuation ArchiMer
De Wit, Rutger; Rey-valette, Helene; Balavoine, Juliette; Ouisse, Vincent; Lifran, Robert.
Conservation of the seven lagoons of the Palavas complex (southern France) has been severely impaired by nutrient over-enrichment during at least four decades. The effluents of the Montpellier wastewater treatment plant (WWTP) represented the main nutrient input. To improve the water quality of these lagoons, this WWTP was renovated and upgraded and, since the end of 2005, its effluents have been discharged 11 km offshore into the Mediterranean (total investment €150 M). Possibilities of ecosystem restoration as part of a conservation programme were explored by a focus group of experts. Their tasks were: (i) to evaluate the impact of the reduction of the nutrient input; (ii) if necessary, to design additional measures for an active restoration programme;...
Tipo: Text Palavras-chave: Coastal lagoon; Seagrass meadow; Marine and brackish Magnoliophyta; Phytoplankton; Ecosystem services; Willingness to pay (WTP); Ecosystem trajectory' nutrient enrichment; Oligotrophication; Sediment N and P contents; Water Framework Directive.
Ano: 2017 URL: https://archimer.ifremer.fr/doc/00317/42867/42368.pdf
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Spatial and long-term changes in the functional and structural phytoplankton communities along the French Atlantic coast ArchiMer
David, Valerie; Ryckaert, Mireille; Karpytchev, Mikhail; Bacher, Cedric; Arnaudeau, Vanessa; Vidal, Nadia; Maurer, Daniele; Niquil, Nathalie.
Spatial and interannual variations of phytoplankton diversity were characterized along the French Atlantic Coast in relation to physical factors and large-scale climatic indices using phytoplankton surveys conducted from 1993 to 2010 in four geographical areas. This study relates phytoplankton diversity to oyster recruitment success by comparing a 'specific' versus a 'functional' diversity approach. Functional diversity was represented by functional groups of different phytoplanktonic functional traits (size, shape, toxicity), relevant for oyster feeding during growth, reproduction and larval development. Phytoplankton diversity patterns along the French Atlantic coast corresponded to a geographical distribution mainly driven by a latitudinal gradient and...
Tipo: Text Palavras-chave: Phytoplankton; Long-term variation; Spatial variation; Climate; Atlantic coast.
Ano: 2012 URL: http://archimer.ifremer.fr/doc/00093/20376/19677.pdf
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First report of the potentially toxic marine diatom Pseudo-nitzschia simulans (Bacillariophyceae) from the East Australian Current ArchiMer
Ajani, Penelope A.; Lim, Hong Chang; Verma, Arjun; Lassudrie, Malwenn; Mcbean, Katie; Doblin, Martina A.; Murray, Shauna A..
Certain species of the marine diatom genus Pseudo‐nitzschia are responsible for the production of the domoic acid (DA), a neurotoxin that can bioaccumulate in the food chain and cause amnesic shellfish poisoning (ASP) in animals and humans. This study extends our knowledge by reporting on the first observation of the potentially toxic species Pseudo‐nitzschia simulans from this region. One clonal strain of P. simulans was isolated from the East Australian Current and characterized using light and transmission electron microscopy, and phylogenetic analyses based on regions of the internal transcribed spacer (ITS) and the D1–D3 region of the large subunit (LSU) of the nuclear‐encoded ribosomal deoxyribonucleic acid (rDNA), as well as examined for DA...
Tipo: Text Palavras-chave: Domoic acid; East Australian current; Harmful algal blooms; Phytoplankton; Shellfish.
Ano: 2020 URL: https://archimer.ifremer.fr/doc/00618/73047/75313.pdf
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Vigilance, veille et surveillance des risques alimentaires phycotoxiniques ArchiMer
Grastilleur, Charlotte; Arnich, Nathalie; Belin, Catherine.
Official routine monitoring of phycotoxins and toxinproducing algae is regularly implemented in the marine environment through phytoplankton identification in water samples, as well as by official analysis in shellfish in order to verify compliance with the maximum limits set in regulation (EC) no.853/2004. These activities are conducted by the official REPHY network, coordinated by IFREMER (French Research Institute for Exploitation of the Sea). As for other food safety hazards, the issue of emerging and non-regulated hazards needs to be fully addressed in addition to the ongoing above-mentioned surveillance efforts. This issue was submitted to ANSES (French Agency for Food, Environmental and Occupational Health & Safety) in the surveillance framework...
Tipo: Text Palavras-chave: Phytoplancton; Phycotoxines; Biotoxines marines; Alexandrium; Dinophysis; Pseudo-nitzschia; ASP; DSP; PSP; Surveillance des aliments; Veille alimentaire; Sécurité sanitaire des aliments; Coquillages; Phytoplankton; Phycotoxins; Marine biotoxins; Alexandrium; Dinophysis; Pseudo-nitzschia; ASP; DSP; PSP; Food monitoring; Food surveillance; Food safety; Shellfish.
Ano: 2015 URL: http://archimer.ifremer.fr/doc/00393/50471/51206.pdf
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Les chaines alimentaires naturelles et l'aquaculture ArchiMer
Barnabe, G.
Aquaculture sets up manipulation of natural food chains. This paper describes some utilizations of photosynthetic bacteria, phytoplankton and zooplankton taken out sewage ponds, wetlands or neritic waters.
Tipo: Text Palavras-chave: Bacteria; Photosynthesis; Aquaculture; Ecosystems; Zooplankton; Phytoplankton; Food chains.
Ano: 1983 URL: http://archimer.ifremer.fr/doc/1983/acte-1254.pdf
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