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| Registros recuperados: 63 | |
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| Arnaud-haond, Sophie; Duarte, Carlos M.; Teixeira, Sara; Massa, Sonia Isabel; Terrados, Jorge; Nguyen Hong, Tri; Phan Nguyen, Hong; Serrao, Ester A.. |
| The widespread use of Agent Orange (a mixture of phenoxyl herbicides) over Southern Vietnam by US Forces led to the decimation of mangrove forests in the Mekong Delta. Mangrove trees Avicennia alba were sampled across the Mekong Delta; their age was assessed using models based on internode growth and samples were genotyped for 6 microsatellite loci. The evolution of genetic diversity over time elapsed since local extinction was reconstructed and compared with the genetic diversity of an unaffected population from Thailand, The results show that genetic diversity of the A. alba population is still increasing in the Mekong Delta 3 decades after the end of the Vietnam War, but is reaching an asymptotic level that is comparable to the adjacent non-affected... |
| Tipo: Text |
Palavras-chave: Agent Orange; Deforestation; Mangrove; Local extinction; Demographic recovery; Genetic recovery; Recolonization genetics. |
| Ano: 2009 |
URL: http://archimer.ifremer.fr/doc/2009/publication-6898.pdf |
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| Bailleul, Diane; Mackenzie, Alicia; Sacchi, Olivier; Poisson, Francois; Bierne, Nicolas; Arnaud-haond, Sophie. |
| The blue shark Prionace glauca, among the most common and widely studied pelagic sharks, is a top predator, exhibiting the widest distribution range. However, little is known about its population structure and spatial dynamics. With an estimated removal of 10 to 20 million individuals per year by fisheries, the species is classified as “Near Threatened” by International Union for Conservation of Nature. We lack the knowledge to forecast the long-term consequences of such a huge removal on this top predator itself and on its trophic network. The genetic analysis of more than 200 samples collected at broad scale (from Mediterranean Sea, North Atlantic and Pacific Oceans) using mtDNA and nine microsatellite markers allowed to detect signatures of genetic... |
| Tipo: Text |
Palavras-chave: Blue shark; Conservation; Fisheries; Genetic panmixia; Prionace glauca; Stock. |
| Ano: 2018 |
URL: https://archimer.ifremer.fr/doc/00417/52866/53776.pdf |
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| Boavida, Joana; Becheler, Ronan; Choquet, Marvin; Frank, Norbert; Taviani, Marco; Bourillet, Jean-francois; Meistertzheim, Anne‐leila; Grehan, Anthony; Savini, Alessandra; Arnaud-haond, Sophie. |
| Aim To infer cold‐water corals’ (CWC) post‐glacial phylogeography and assess the role of Mediterranean Sea glacial refugia as origins for the recolonization of the northeastern Atlantic Ocean. Location Northeastern Atlantic Ocean and Mediterranean Sea. Taxon Lophelia pertusa, Madrepora oculata. Methods We sampled CWC using remotely operated vehicles and one sediment core for coral and sediment dating. We characterized spatial genetic patterns (microsatellites and a nuclear gene fragment) using networks, clustering and measures of genetic differentiation. Results Inferences from microsatellite and sequence data were congruent, and showed a contrast between the two CWC species. Populations of L. pertusa present a dominant pioneer haplotype, local haplotype... |
| Tipo: Text |
Palavras-chave: Cold-water corals; Deep-sea; Glacial marine refugia; Last Glacial Maximum; Lophelia pertusa; Madrepora oculata; Marine phylogeography. |
| Ano: 2019 |
URL: https://archimer.ifremer.fr/doc/00487/59864/63140.pdf |
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| Moalic, Yann; Desbruyeres, Daniel; Duarte, Carlos M.; Rozenfeld, Alejandro F.; Bachraty, Charleyne; Arnaud-haond, Sophie. |
| Defining biogeographic provinces to understand the history and evolution of communities associated with a given kind of ecosystem is challenging and usually requires a priori assumptions to be made. We applied network theory, a holistic and exploratory method, to the most complete database of faunal distribution available on oceanic hydrothermal vents, environments which support fragmented and unstable ecosystems, to infer the processes driving their worldwide biogeography. Besides the identification of robust provinces, the network topology allowed us to identify preferential pathways that had hitherto been overlooked. These pathways are consistent with the previously proposed hypothesis of a role of plate tectonics in the biogeographical history of... |
| Tipo: Text |
Palavras-chave: Biogeography; Deep sea ecology; Hydrothermal vents; Network analysis; Systems biology. |
| Ano: 2012 |
URL: http://archimer.ifremer.fr/doc/00063/17400/15164.pdf |
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| Becheler, Ronan; Masson, Jean-pierre; Arnaud-haond, Sophie; Halkett, Fabien; Mariette, Stephanie; Guillemin, Marie-laure; Valero, Myriam; Destombe, Christophe; Stoeckel, Solenn. |
| Partial clonality is commonly used in Eukaryotes and has large consequences for their evolution and ecology. Assessing accurately the relative importance of clonal versus sexual reproduction matters for studying and managing such species. Here, we proposed a Bayesian approach, ClonEstiMate, to infer rates of clonality c from populations sampled twice over a short time interval, ideally one generation time. The method relies on the likelihood of the transitions between genotype frequencies of ancestral and descendent populations, using an extended Wright-Fisher model explicitly integrating reproductive modes. Our model provides posterior probability distribution of inferred c, given the assumed rates of mutation, as well as inbreeding and selfing when... |
| Tipo: Text |
Palavras-chave: Inbreeding; Instantaneous inference; Population genetics model; Rate of asexuality; Selfing. |
| Ano: 2017 |
URL: https://archimer.ifremer.fr/doc/00390/50187/50810.pdf |
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| Arnaud-haond, Sophie; Candeias, Rui; Serrao, Ester A.; Teixeira, Sara. |
| Polymorphic microsatellites were developed for the invasive green algae Caulerpa taxifolia using next generation DNA sequencing. Results showed a limited rate of microsatellites for the amount of sequences, possibly explaining failure of previous attempts for microsatellite development through classical methods. Eight polymorphic loci were selected that exhibited polymorphism and a null or negligible rate of amplification failure. The number of alleles per locus ranged from two to seven. The reconstruction of Multi Locus Genotypes and the heterozygosity and departure from Hardy-Weinberg equilibrium confirmed the influence of clonal reproduction and showed the usefulness of this set of markers to successfully discriminate clonal lineages and analyze the... |
| Tipo: Text |
Palavras-chave: Caulerpa taxifolia; Algae; Invasion; Mediterranean; Queensland; New South Wales; Seagrass. |
| Ano: 2013 |
URL: http://archimer.ifremer.fr/doc/00126/23720/21598.pdf |
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| Meistertzheim, Anne-leila; Arnaud-haond, Sophie; Boudry, Pierre; Thebault, Marie-therese. |
| As a result of aquaculture activities, Pacific oysters Crassostrea gigas (Thunberg, 1793) have invaded European coasts. Using seven microsatellites, we found virtually no genetic differentiation between natural populations throughout the European range (from the south of the Wadden Sea (the Netherlands) to the south of France) and French cultivated oysters. The genetic homogeneity of Pacific oyster samples appears to be the result of repeated transfers from same seed stocks made for aquaculture and, to a lesser extent, widespread dispersal due to specific biological traits of this species. The only genetic differentiation of Sylt population in the north of the Wadden Sea (Germany) suggests a stronger, persistent impact of ongoing supply of new genetic... |
| Tipo: Text |
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| Ano: 2013 |
URL: http://archimer.ifremer.fr/doc/00119/23051/20924.pdf |
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| Lagabrielle, Erwann; Crochelet, Estelle; Andrello, Marco; Schill, Steven R.; Arnaud-haond, Sophie; Alloncle, Neil; Ponge, Benjamin. |
| Connectivity is a crucial process underpinning the persistence, recovery, and productivity of marine ecosystems. The Convention on Biological Diversity, through the Aichi Target 11, has set the ambitious objective of implementing a ‘well connected system of protected areas’ by 2020. This paper identifies eight challenges toward the integration of connectivity into MPA network management and planning. A summary table lists the main recommendations in terms of method, tool, advice, or action to address each of these challenges. Authors belong to a science–management continuum including researchers, international NGO officers, and national MPA agency members. Three knowledge challenges are addressed: selecting and integrating connectivity measurement metrics;... |
| Tipo: Text |
Palavras-chave: Ocean; Coastal; Conservation evaluation; Marine protected areas; Spatial modelling; Fishing. |
| Ano: 2014 |
URL: http://archimer.ifremer.fr/doc/00226/33742/33891.pdf |
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| Van Den Beld, Inge; Bourillet, Jean-francois; Arnaud-haond, Sophie; De Chambure, Laurent; Davies, Jaime S; Guillaumont, Brigitte; Olu, Karine; Menot, Lenaick. |
| The topographical and hydrological complexity of submarine canyons, coupled with high substratum heterogeneity, make them ideal environments for cold-water coral (CWC) habitats. These habitats, including reefs, are thought to provide important functions for many organisms. The canyons incising the continental slope of the Bay of Biscay have distinct morphological differences from the north to the south. CWCs have been reported from this basin in the late 19th century; however, little is known about their present-day distribution, diversity and environmental drivers in the canyons. In this study, the characteristics and distribution of CWC habitats in the submarine canyons of the Bay of Biscay are investigated. Twenty-four canyons and three locations... |
| Tipo: Text |
Palavras-chave: Cold-water corals; Habitats; Submarine canyons; Bay of Biscay; NE Atlantic; ROV; Towed camera; Distribution. |
| Ano: 2017 |
URL: https://archimer.ifremer.fr/doc/00382/49343/49733.pdf |
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| Cowart, Dominique; Huang, Chunya; Arnaud-haond, Sophie; Carney, Susan L.; Fisher, Charles R.; Schaeffer, Stephen W.. |
| The history of colonization and dispersal in fauna distributed among deep-sea chemosynthetic ecosystems remains enigmatic and poorly understood because of an inability to mark and track individuals. A combination of molecular, morphological and environmental data improves understanding of spatial and temporal scales at which panmixia, disruption of gene flow or even speciation may occur. Vestimentiferan tubeworms of the genus Escarpia are important components of deep -sea cold seep ecosystems, as they provide long-term habitat for many other taxa. Three species of Escarpia, Escarpia spicata [Gulf of California (GoC)], Escarpia laminata [Gulf of Mexico (GoM)] and Escarpia southwardae (West African Cold Seeps), have been described based on morphology, but... |
| Tipo: Text |
Palavras-chave: Deep sea; Hydrocarbon seep; Microsatellite; Population structure; Siboglinid; Vestimentiferan tubeworm. |
| Ano: 2013 |
URL: http://archimer.ifremer.fr/doc/00152/26354/24515.pdf |
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| Morato, Telmo; González‐irusta, José‐manuel; Dominguez‐carrió, Carlos; Wei, Chih‐lin; Davies, Andrew; Sweetman, Andrew K.; Taranto, Gerald H.; Beazley, Lindsay; García‐alegre, Ana; Grehan, Anthony; Laffargue, Pascal; Murillo, Francisco Javier; Sacau, Mar; Vaz, Sandrine; Kenchington, Ellen; Arnaud-haond, Sophie; Callery, Oisín; Chimienti, Giovanni; Cordes, Erik; Egilsdottir, Hronn; Freiwald, André; Gasbarro, Ryan; Gutiérrez‐zárate, Cristina; Gianni, Matthew; Gilkinson, Kent; Wareham Hayes, Vonda E.; Hebbeln, Dierk; Hedges, Kevin; Henry, Lea‐anne; Johnson, David; Koen‐alonso, Mariano; Lirette, Cam; Mastrototaro, Francesco; Menot, Lenaick; Molodtsova, Tina; Durán Muñoz, Pablo; Orejas, Covadonga; Pennino, Maria Grazia; Puerta, Patricia; Ragnarsson, Stefán Á.; Ramiro‐sánchez, Berta; Rice, Jake; Rivera, Jesús; Roberts, J. Murray; Ross, Steve W.; Rueda, José L.; Sampaio, Íris; Snelgrove, Paul; Stirling, David; Treble, Margaret A.; Urra, Javier; Vad, Johanne; Oevelen, Dick; Watling, Les; Walkusz, Wojciech; Wienberg, Claudia; Woillez, Mathieu; Levin, Lisa A.; Carreiro‐silva, Marina. |
| The deep sea plays a critical role in global climate regulation through uptake and storage of heat and carbon dioxide. However, this regulating service causes warming, acidification and deoxygenation of deep waters, leading to decreased food availability at the seafloor. These changes and their projections are likely to affect productivity, biodiversity and distributions of deep‐sea fauna, thereby compromising key ecosystem services. Understanding how climate change can lead to shifts in deep‐sea species distributions is critically important in developing management measures. We used environmental niche modelling along with the best available species occurrence data and environmental parameters to model habitat suitability for key cold‐water coral and... |
| Tipo: Text |
Palavras-chave: Climate change; Cold-water corals; Deep-sea; Fisheries; Fishes; Habitat suitability modelling; Octocorals; Scleractinians; Species distribution models; Vulnerable marine ecosystems. |
| Ano: 2020 |
URL: https://archimer.ifremer.fr/doc/00610/72211/71007.pdf |
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| Teixeira, Sara; Olu, Karine; Decker, Carole; Cunha, Regina L.; Fuchs, Sandra; Hourdez, Stephane; Serrao, Ester A.; Arnaud-haond, Sophie. |
| Chemosynthetic ecosystems are distributed worldwide in fragmented habitats harbouring seemingly highly specialized communities. Yet, shared taxa have been reported from highly distant chemosynthetic communities. These habitats are distributed in distinct biogeographical regions, one of these being the so-called Atlantic Equatorial Belt (AEB). Here, we combined genetic data (COI) from several taxa to assess the possible existence of cryptic or synonymous species and to detect the possible occurrence of contemporary gene flow among populations of chemosynthetic species located on both sides of the Atlantic. Several Evolutionary Significant Units (ESUs) of Alvinocarididae shrimp and Vesicomyidae bivalves were found to be shared across seeps of the AEB. Some... |
| Tipo: Text |
Palavras-chave: Atlantic equatorial belt; Chemosynthetic habitats; Deep-sea connectivity; Endemic bivalves; Endemic shrimp; Genetic diversity; Microsatellite markers; Mitochondrial COI gene. |
| Ano: 2013 |
URL: http://archimer.ifremer.fr/doc/00157/26789/24950.pdf |
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| Arnaud-haond, Sophie; Marba, Nuria; Diaz-almela, Elena; Serrao, Ester A.; Duarte, Carlos M.. |
| The diversity-stability relationship is the subject of a long-standing debate in ecology, but the genetic component of diversity has seldom been explored. In this study, we analyzed the interplay between genetic diversity and demographic responses to environmental pressures. This analysis included 30 meadows formed by the Mediterranean endemic seagrass, Posidonia oceanica, showing a wide range of population dynamics ranging from a near equilibrium state to steep decline due to strong environmental pressures close to aquaculture installations. Our results show that sedimentation rates are much better predictors of mortality than clonal or genetic components. An unexpected positive trend was observed between genotypic diversity and mortality, along with a... |
| Tipo: Text |
Palavras-chave: Seagrass; Demography; Clonality; Genetic richness; Diversity-stability; Posidonia oceanica. |
| Ano: 2010 |
URL: http://archimer.ifremer.fr/doc/00006/11693/8498.pdf |
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| Masucci, A. Paolo; Arnaud-haond, Sophie; Eguiluz, Victor M.; Hernandez-garcia, Emilio; Serrao, Ester A.. |
| We analyse a large data set of genetic markers obtained from populations of Cymodocea nodosa, a marine plant occurring from the East Mediterranean to the Iberian-African coasts in the Atlantic Ocean. We fully develop and test a recently introduced methodology to infer the directionality of gene flow based on the concept of geographical segregation. Using the Jensen-Shannon divergence, we are able to extract a directed network of gene flow describing the evolutionary patterns of Cymodocea nodosa. In particular we recover the genetic segregation that the marine plant underwent during its evolution. The results are confirmed by natural evidence and are consistent with an independent cross analysis. |
| Tipo: Text |
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| Ano: 2012 |
URL: http://archimer.ifremer.fr/doc/00127/23872/21805.pdf |
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| Gagnaire, Pierre-alexandre; Broquet, Thomas; Aurelle, Didier; Viard, Frederique; Souissi, Ahmed; Bonhomme, Francois; Arnaud-haond, Sophie; Bierne, Nicolas. |
| Estimating the rate of exchange of individuals among populations is a central concern to evolutionary ecology and its applications to conservation and management. For instance, the efficiency of protected areas in sustaining locally endangered populations and ecosystems depends on reserve network connectivity. The population genetics theory offers a powerful framework for estimating dispersal distances and migration rates from molecular data. In the marine realm, however, decades of molecular studies have met limited success in inferring genetic connectivity, due to the frequent lack of spatial genetic structure in species exhibiting high fecundity and dispersal capabilities. This is especially true within biogeographic regions bounded by well-known... |
| Tipo: Text |
Palavras-chave: Connectivity; Gene flow; Marine conservation; Population genomics; Population structure. |
| Ano: 2015 |
URL: http://archimer.ifremer.fr/doc/00275/38592/37120.pdf |
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| Arnaud-haond, Sophie; Moalic, Yann; Hernandez-garcia, Emilio; Eguiluz, Victor M.; Alberto, Filipe; Serrao, Ester A.; Duarte, Carlos M.. |
| The recurrent lack of isolation by distance reported at regional scale in seagrass species was recently suggested to stem from stochastic events of large-scale dispersal. We explored the usefulness of phylogenetic information contained in microsatellite loci to test this hypothesis by using the Genetic Diversity Spectrum (GDS) on databases containing, respectively, 7 and 9 microsatellites genotypes for 1541 sampling units of Posidonia oceanica and 1647 of Cymodocea nodosa. The simultaneous increase of microsatellite and geographic distances that emerges reveals a coherent pattern of isolation by distance in contrast to the chaotic pattern previously described using allele frequencies, in particular, for the long-lived P. oceanica. These results suggest... |
| Tipo: Text |
Palavras-chave: Clonality; Genetic Diversity Spectrum; Genetic divergence; Microsatellites; Seagrass; Stepwise mutation. |
| Ano: 2014 |
URL: http://archimer.ifremer.fr/doc/00182/29292/27733.pdf |
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| Arnaud-haond, Sophie; Van Den Beld, Inge; Becheler, Ronan; Orejas, C.; Menot, Lenaick; Frank, N.; Grehan, A.; Bourillet, Jean-francois. |
| The scleractinian coral Lophelia pertusa has been the focus of deep-sea research since the recognition of the vast extent of coral reefs in North Atlantic waters two decades ago, long after their existence was mentioned by fishermen. These reefs where shown to provide habitat, concentrate biomass and act as feeding or nursery grounds for many species, including those targeted by commercial fisheries. Thus, the attention given to this cold-water coral (CWC) species from researchers and the wider public has increased. Consequently, new research programs triggered research to determine the full extent of the corals geographic distribution and ecological dynamics of “Lophelia reefs”. The present study is based on a systematic standardised sampling design to... |
| Tipo: Text |
Palavras-chave: Lophelia pertusa; Madrepora oculata; False-chimaera colonies; Cold water corals (CWC); Bay of Biscay; Ireland; Iceland. |
| Ano: 2017 |
URL: http://archimer.ifremer.fr/doc/00274/38530/37048.pdf |
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| Registros recuperados: 63 | |
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