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Dynamics of spatial patterns of microphytobenthic biomass: inferences from a geostatistical analyisis of two comprenhensive surveys in Marennes-Oléron Bay (France) ArchiMer
Guarini, Jean-marc; Blanchard, Gerard; Bacher, Cedric; Gros, Philippe; Riera, Pascal; Richard, Pierre; Gouleau, Dominique; Galois, Robert; Prou, Jean; Sauriau, Pierre-guy.
Microphytobenthos plays an important role as primary producer in shallow embayments subject to a tidal regime. The present paper aims to characterize the spatial patterns of sedimentary chlorophyll a (chl a) biomass in 2 seasons in the wide intertidal mudflats of the Marennes-Oleron Bay (France); furthermore, it provides estimates of total microphytobenthic biomass. Accordingly, a systematic sampling scheme was performed in June 1995 and in January 1996. On average, biomass was higher in June (ca 120 mg chl a m-2) than in January (ca 85 mg chl a m-2). Moreover, the geostatistical analysis revealed that spatial similarities were propagated over larger distances in June (6 km) than in January (2.2 km). In order to account for this result , we suggest that...
Tipo: Text Palavras-chave: Marennes Oleron; Intertidal mudflat; Geostatistics; Spatial distribution; Chrlorophyll a; Microphytobenthos.
Ano: 1998 URL: https://archimer.ifremer.fr/doc/1998/publication-3820.pdf
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MODELLING REPORT. Coastal lagoon modelling : An integrated approach. Deliverables D12 – D13 – D14 ArchiMer
Chapelle, Annie; Bacher, Cedric; Duarte, P; Fiandrino, Annie; Galbiati, L; Marinov, D; Martinez, J; Norro, A; Pereira, A; Plus, Martin; Rodriguez, S; Tsirtsis, G; Zaldivar, Jm.
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Ano: 2005 URL: http://archimer.ifremer.fr/doc/00348/45930/45622.pdf
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A probabilistic approach of flow-balanced network based on Markov chains ArchiMer
Leguerrier, Delphine; Bacher, Cedric; Benoit, Eric; Niquil, Nathalie.
We used Markov chains to assess residence time, first passage time, rare of transfers between compartments, recycling index with a general mathematical formalism. Such a description applies to any flow-balanced system that can be modelled as a series of discrete stages or compartments through which matter flows. We derived a general set of equations from a probabilistic approach and applied them to a food web and a physical system derived from the literature. We therefore analysed preferential pathways of matter and behaviour of these systems and showed how it was possible to build up and exploit indices on the basis of a transition probability matrix describing the network, and to characterize with a generic algorithm: (1) the total indirect relationships...
Tipo: Text Palavras-chave: First passage time; Box model; Food web model; Network; Transfer rate; Residence time; Markov chain.
Ano: 2006 URL: http://archimer.ifremer.fr/doc/2006/publication-2268.pdf
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A spatially explicit ecosystem model of seston depletion in dense mussel culture ArchiMer
Grant, J; Bacher, Cedric; Cranford, P; Guyondet, T; Carreau, M.
A fully-coupled biological-physical-chemical model of a coastal ecosystem was constructed to examine the impact of suspended mussel culture on phytoplankton biomass in Tracadie Bay, Prince Edward Island, Canada. Due to the extent of mussel culture there, we hypothesised that shellfish filtration would control the concentration and distribution of phytoplankton and other suspended particles in the bay. Circulation was delineated with a tidally-driven 2D numerical model and used to drive an ecosystem model with a focus on pelagic components including phytoplankton production, nutrients, detritus, and mussels. The benthos were treated as a sink. Nutrients and seston were forced by tidal exchange and river input, with phytoplankton additionally forced by...
Tipo: Text Palavras-chave: Towed sensors; Nutrient dynamics; Circulation model; Phytoplankton; Carrying capacity; Shellfish aquaculture; Estuaries; Ecosystem model.
Ano: 2008 URL: http://archimer.ifremer.fr/doc/2008/publication-6951.pdf
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Harmful algae niche responses to environmental and community variation along the French coast ArchiMer
Karasiewicz, Stephane; Chapelle, Annie; Bacher, Cedric; Soudant, Dominique.
Distribution, frequency and intensity of harmful phytoplanktonic species are impacted by changes in environmental conditions. In the Bay of Brest, Alexandrium minutum has been responsible for several harmful algal blooms (HABs) associated with toxin production causing paralytic shellfish poisoning (PSP). Additionally, Lepidodinium chlorophorum causes green water and hypoxia locally in the Bay of Biscay. Previous studies revealed that L. chlorophorum’s success was related to possible competitive exclusion. Therefore, the phytoplankton composition and the environmental conditions should be taken into account. This study aims to assess the combined effect of changes in habitat conditions and community structure with the occurrence of HAB species, on a...
Tipo: Text Palavras-chave: Alexandrium minutum; Lepidodinium chlorophorum; Subniche; Competition; Indicating species; Spatio-temporal data.
Ano: 2020 URL: https://archimer.ifremer.fr/doc/00614/72567/71521.xml
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Evolution et état du cheptel ostréicole dans le bassin de Marennes-Oléron: intérêt d'une régulation ArchiMer
Heral, Maurice; Bacher, Cedric; Razet, Daniel; Prou, Jean; Deslous-paoli, Jean-marc.
Le bassin conchylicole de Marennes-Oléron assure 40 % des 100 000 tonnes d ' huîtres commercialisées annuellement en moyenne en France (20 000 emplois, 1 milliard de chiffre d'affaire) . La modélisation des équilibres qui s'établissent entre l es stocks mis en culture , et la production annuelle , réalisée par la station IFREMER de La Tremblade , a mis en évidence les résultats suivants : Lorsque la biomasse augmente : a) La production plafonne vers 40 000 tonnes pour une biomasse de l'ordre de 80 000 tonnes avec l'huître japonaise, ce qui correspond à une biomasse équivalente de 130 000 tonnes d'huîtres portugaises. b) La durée du cycle de production d'une huître de 70 g passe de 2 ans à 4 ans. c) Les mortalités courantes passent simultanément de 20 % à...
Tipo: Text Palavras-chave: Production; Ostréiculture; Biomasse; Modélisation; Marennes Oléron.
Ano: 1986 URL: http://archimer.ifremer.fr/doc/00048/15909/13338.pdf
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Conditions d'apparition de densités accrues de dinoflagellés Dinophysis dans le pertuis d'Antioche et les eaux adjacentes. Campagnes Dinopertuis 89 ArchiMer
Delmas, Daniel; Herbland, Alain; Maestrini, Serge; Mornet, Francoise; Morand, Philippe; Spano, Anna-maria; Burgeot, Thierry; Margat, Sylvie; Charpentier, Gabriel; Fillon, Alain; Leguay, Didier; Thomas, Gerard; Bacher, Cedric; Heral, Maurice; Prou, Jean.
Environmental and species features which lead to increases in cell density of the D.S.P. Dinoflagellate Dinophysis in inshore and offshore waters of the île de Ré - île d'Oléron area, France (cruises "Dinopertuis89"). Four weekly sampling series have been carried out, within 10 May – 31 May 1989, at 24 stations located from inshore to offshore waters of the "île de Ré" - "île d’Oléron" area, with the aim to investigate (i) whether Dinophysis increases in cell density occur first in offshore waters and then, eventually, are pushed to the coast, or develop simultaneously in the whole area, and (ii) whether there are some environmental conditions which are related to Dinophysis blooms. Depths of sampling have been stated on the bas is of STD profiles. All...
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Ano: 1990 URL: http://archimer.ifremer.fr/doc/00174/28532/26916.pdf
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Applying Dynamic Energy Budget (DEB) theory to simulate growth and bio-energetics of blue mussels under low seston conditions ArchiMer
Rosland, R; Strand, O; Alunno-bruscia, Marianne; Bacher, Cedric; Strohmeier, T.
A Dynamic Energy Budget (DEB) model for simulation of growth and bioenergetics of blue mussels (Mytilus edulis) has been tested in three low seston sites in southern Norway. The observations comprise four datasets from laboratory experiments (physiological and biometrical mussel data) and three datasets from in situ growth experiments (biometrical mussel data). Additional in situ data from commercial farms in southern Norway were used for estimation of biometricalrelationships in the mussels. Three DEB parameters (shape coefficient, half saturation coefficient, and somatic maintenance rate coefficient) were estimated from experimental data, and the estimated parameters were complemented with parameter values from literature to establish a basic parameter...
Tipo: Text Palavras-chave: Low seston; Modelling; DEB theory; Mytilus edulis; Mussel culture.
Ano: 2009 URL: http://archimer.ifremer.fr/doc/2009/publication-6266.pdf
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Nutrition and reproduction are key parameters in the interaction process leading to Crassostrea gigas oyster summer mortality in France ArchiMer
Samain, Jean-francois; Degremont, Lionel; Soletchnik, Patrick; Ropert, Michel; Bedier, Edouard; Mazurie, Joseph; Mazurie, Joseph; Martin, Jean-louis; Moal, Jeanne; Mathieu, Michel; Pouvreau, Stephane; Lambert, Christophe; Escoubas, Jean-michel; Nicolas, Jean-louis; Le Roux, Frédérique; Renault, Tristan; Burgeot, Thierry; Bacher, Cedric; Boudry, Pierre.
Complex interactions between oyster, environment and pathogens were observed during the MOREST (2001-2005) project on summer mortality events of Crassostrea gigas oysters in France. The talk will show how nutrition level increasing reproductive intensity generates a risk for pathogen infection under synergistic effect of temperature and stress. Moreover, a genetic component is associated to specific reproductive performances and spawning behaviour. To better understand origin of such resistance or susceptibility to summer mortality, other characteristics as stress susceptibility, energy management and hemocyte activities of oysters from the two phenotypes were compared. This first comparison suggests interactions between stress, reproduction and defence...
Tipo: Text Palavras-chave: Genetic; Pathologie; Mortality; Crassostrea gigas; Pacific oyster; Reproduction; Nutrition; Physilogy.
Ano: 2006 URL: https://archimer.ifremer.fr/doc/2006/acte-3467.pdf
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Use of an ecosystem model for the assessment of the influence of cultivated oysters (Crassostrea gigas) on the nitrogen cycling in the Marennes-Oleron Bay ArchiMer
Bacher, Cedric.
A model of the growth of cultivated oyster in the Marennes-Oléron bay was developped to assess the influence of the nutrients input and of the amount of oysters on the growth performance (Railiard. 1991). The ecosystem main characteristics are: - short residence time of the water. - high turbidity level, depending on the season, tidal level, bathymetry, currents and wind. The turbidity acts on the primary production through light limitation and on oyster production as a food dilution factor. - presence of high density cultivated areas on mid-tidal flats. The amount of oysters is ranging between 80 000 and 110 000 tons according to the year. - spatial variability of the biological and physical features. - coupling effects of the physic process (transport,...
Tipo: Text Palavras-chave: Ecosystem model; Oyster; Crassostrea gigas; Nitrogen cycling; Marennes Oleron Bay; Charente Maritime.
Ano: 1993 URL: http://archimer.ifremer.fr/doc/00102/21300/18914.pdf
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Ecosystem Modelling: sensitivity of physical characteristics to spatial box design ArchiMer
Bacher, Cedric.
The residence time of the water in different parts of the Marennes-Oléron Bay is one important characteristic of the biological system (Raillard, 1990). For instance, the primary production potentiality of a given area depends on the local turbidity and the residence time of the waters in that area. Further, global assessments of the nitrogen flow between the biological compartments and inflows from the ocean or the Charente river derived from the ecosystem model by Raillard (1990), showed the predominance of the latter term onto the former. A new hydrological model of the Marennes-Oléron Bay yielded two dimensional velocity fields for sorne standard tidallevels: neap-tide, spring-tide, mean tide (Lazur, unpub.). These computations were the basis for the...
Tipo: Text Palavras-chave: Ecosystem modelling; Box model; Marennes Oleron Bay; Charente Maritime.
Ano: 1992 URL: http://archimer.ifremer.fr/doc/00102/21306/18919.pdf
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Building functional groups of marine benthic macroinvertebrates on the basis of general community assembly mechanisms ArchiMer
Alexandridis, Nikolaos; Bacher, Cedric; Desroy, Nicolas; Jean, Fred.
The accurate reproduction of the spatial and temporal dynamics of marine benthic biodiversity requires the development of mechanistic models, based on the processes that shape macroinvertebrate communities. The modelled entities should, accordingly, be able to adequately represent the many functional roles that are performed by benthic organisms. With this goal in mind, we applied the emergent group hypothesis (EGH), which assumes functional equivalence within and functional divergence between groups of species. The first step of the grouping involved the selection of 14 biological traits that describe the role of benthic macroinvertebrates in 7 important community assembly mechanisms. A matrix of trait values for the 240 species that occurred in the Rance...
Tipo: Text Palavras-chave: Assembly mechanisms; Benthic communities; Biological traits; Emergent groups; Functional diversity; Functional redundancy.
Ano: 2017 URL: http://archimer.ifremer.fr/doc/00369/47975/48000.pdf
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Modèle énergétique uniboite de la croissance des huîtres (Crassostrea gigas) dans le bassin de Marennes-Oléron ArchiMer
Bacher, Cedric; Heral, Maurice; Deslous-paoli, Jean-marc; Razet, Daniel.
The growth of oysters (Crassostrea gigas) is modeled in order to study the trophic capacity of the Bay of Marennes Oléron. Total seston and amount of protids, lipids, and carbohydrates converted to energy are the environmental factors taken into account. Time series of these variables are derived during 2 yr with a daily time step from a linear regression including the tidal velocity, the height of the water column, and the wind velocity. A model of the energetic budget based on assimilation and respiration terms and depending on the previous time series is run to simulate the individual growth of an oyster. The knowledge of the number of oysters, the flow of water entering the bay, and the volume of the bay allows us then to estimate that 7% of the...
Tipo: Text Palavras-chave: Marennes Oléron; Crassostrea gigas; Huîtres; Croissance; Modélisation; Marennes Oleron bay; Crassostrea gigas; Oysters; Growth; Modelisation.
Ano: 1991 URL: http://archimer.ifremer.fr/doc/1991/publication-3051.pdf
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Réseau trophique du bassin de Marennes-Oléron (rapport 1996). Région Poitou-Charentes ArchiMer
Bacher, Cedric; Blanchard, Gerard; Bougrier, Serge; Cariou-le Gall, Valerie; Delmas, D.; Deslous Paoli, Jean-marc; Dinet, A.; Garet, Marie-josee; Geairon, Philippe; Jonquieres, Gerard; Laisne, A.; Maffei, E.; Montagna, P. A.; De Montaudouin, Xavier; Morin, S.; Richard, P.; Riera, Pascal; Sauriau, Pierre-guy; Vrignaud, N..
Les cartographies annuelles des biomasses microphytobenthiques ont été réalisées pour le bassin de Marennes-Oléron. Parallèlement les cartographies des caractéristiques sédimentaires ont été établies simultanément aux cartes d'abondance et biomasse macrofauniques en portant un effort particulier sur les densités des compétiteurs des huîtres notamment les Crépidules. Simultanément les études des mécanismes contrôlant le réseau trophique sur la vasière de Brouage ont été poursuivies notamment les relations entre les flux de sels nutritifs et le microphytobenthos. L'importance de ce dernier compartiment dans la nutrition de l'huître a été clairement mis en évidence par l'utilisation des traçeurs isotopiques naturels. Enfin, les caractéristiques de filtration...
Tipo: Text Palavras-chave: Bassin de Marennes Oléron; Microphytobenthos; Physiologie; Crassostrea gigas; Crépidules; Modèle réseau trophique; Cartographie; Charente-Maritime.
Ano: 1996 URL: http://archimer.ifremer.fr/doc/00102/21294/18911.pdf
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Assessing phytoplankton realized niches using a French National Phytoplankton Monitoring Network ArchiMer
Hernandez Farinas, Tania; Bacher, Cedric; Soudant, Dominique; Belin, Catherine; Barille, Laurent.
Relating environmental factors to species occurrence is a fundamental step in a better understanding of the community structure, the spatial and temporal dynamics of populations and how species may respond to environmental changes. In this paper, we used phytoplankton occurrence data, from a French national phytoplankton monitoring network, and environmental variables with the aim of characterizing the realized ecological niches of phytoplankton groups. We selected 35 phytoplankton taxa representing the most important taxa in terms of occurrence frequency and abundance along the French coast of the eastern English Channel, the Southern Bight of the North Sea and the Atlantic Ocean. We show that environmental variables such as nutrient concentration, water...
Tipo: Text Palavras-chave: Phytoplankton; Environment; Niche position; Tolerance; Kernel density; Outlying mean index.
Ano: 2015 URL: https://archimer.ifremer.fr/doc/00255/36627/35263.pdf
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Modeling trace metal accumulation in the mediterranean mussel, mytilus galloprovincialis ArchiMer
Casas, Stellio; Cossa, Daniel; Gonzalez, Jean-louis; Bacher, Cedric; Andral, Bruno.
Monitoring coastal contamination by trace metals pollution using mollusks bivalves as quantitative bioindicators is widely performed in many international biomonitoring programs. In this purpose, modeling metal dynamic in marine mussels is a reliable tool. It allows understanding the bioaccumulation process which results from the interactions between biological, chemical and environmental factors. To calibrate such a model, kinetic experiments on uptake and elimination were conducted on three Mediterranean sites chosen on the basis of their different nutritive and chemical characteristics.
Tipo: Text Palavras-chave: Growth; Heavy metals; Bioaccumulation; Mytilus galloprovincialis; Bioindicator.
Ano: 2004 URL: http://archimer.ifremer.fr/doc/2004/acte-370.pdf
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Modelling the effect of food depletion on scallop growth in Sungo Bay (China) ArchiMer
Bacher, Cedric; Grant, Jon; Hawkins, Anthony; Fang, Jianguang; Zhu, Mingyuan; Besnard, Melanie.
Sungo Bay (China) has a mean depth of 10 m, a total area of 140 km(2) and is occupied by several types of aquaculture, whilst opening to the ocean. The production of scallops (Chlamys farreri) cultured on long lines is estimated to exceed 50 000 tonnes (total weight) per year. Selection of sites for scallop growth and determination of suitable rearing densities have become important issues. In this study, we focused on the local scale (e.g. 1000 m) where rearing density, food concentration and hydrodynamics interact. We have developed a depletion model coupling a detailed model of C. farreri feeding and growth and a one-dimensional horizontal transport equation. The model was applied to assess the effect of some environmental parameters (e.g. food...
Tipo: Text Palavras-chave: Chlamys farreri; Transport equation; Rearing density; Energy budget.
Ano: 2003 URL: https://archimer.ifremer.fr/doc/2003/publication-570.pdf
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Modelling trace metal (Hg and Pb) bioaccumulation in the Mediterranean mussel, Mytilus galloprovincialis, applied to environmental monitoring ArchiMer
Casas, Stellio; Bacher, Cedric.
Bioaccumulation of metal within an organism results from interactions between physiological factors (growth, weight loss, absorption and accumulation), chemical factors (metal concentration, speciation and bioavailability) and environmental factors (temperature and food concentration). To account for such interactions in the mussel Mytilus galloprovincialis, we combined bioaccumulation and Dynamic Energy Budget models. Field experiments were conducted to measure uptake and elimination kinetics for two metals (Hg and Pb) in three Mediterranean sites with differences in contamination levels, and to calibrate the models. Metal uptake from water and from food was considered separately. Metal elimination resulted from reproduction and/or from direct excretion....
Tipo: Text Palavras-chave: RINBIO; Inverse analysis; Dynamic Energy Budget; Bio indicator.
Ano: 2006 URL: http://archimer.ifremer.fr/doc/2006/publication-1965.pdf
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Temporal changes in the phytoplankton community along the French coast of the eastern English Channel and the southern Bight of the North Sea ArchiMer
Hernandez- Farinas, Tania; Soudant, Dominique; Barille, Laurent; Belin, Catherine; Lefebvre, Alain; Bacher, Cedric.
Long-term trends in the phytoplankton community along the French coast of the English Channel and southern Bight of the North Sea were studied and related to physico-chemical factors and large-climatic indices. Phytoplankton and hydrological data were acquired through three transects. Sampling took place between 1992 and 2011 as part of the French Phytoplankton Monitoring Network (REPHY) and the Regional Nutrients Monitoring Network (SRN). Trends in time-series were identified with dynamic linear models tailored to environmental monitoring data characteristics (e.g. irregular sampling frequency, missing data). Temporal and spatial patterns in the phytoplankton community were explained with a partial triadic analysis. Relationships between the phytoplankton...
Tipo: Text Palavras-chave: Climatic indicators; Dynamic linear model; Environmental drivers; Multivariate analysis; Phytoplankton.
Ano: 2014 URL: http://archimer.ifremer.fr/doc/00195/30619/32177.pdf
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Modelling spatio-temporal variability of Mytilus edulis (L.) growth by forcing a dynamic energy budget model with satellite-derived environmental data ArchiMer
Thomas, Yoann; Mazurie, Joseph; Alunno-bruscia, Marianne; Bacher, Cedric; Bouget, Jean-francois; Gohin, Francis; Pouvreau, Stephane; Struski, Caroline.
In order to assess the potential of various marine ecosystems for shellfish aquaculture and to evaluate their carrying capacities, there is a need to clarify the response of exploited species to environmental variations using robust ecophysiological models and available environmental data. For a large range of applications and comparison purposes, a non-specific approach based on ‘generic’ individual growth models offers many advantages. In this context, we simulated the response of blue mussel (Mytilus edulis L.) to the spatio-temporal fluctuations of the environment in Mont Saint-Michel Bay (North Brittany) by forcing a generic growth model based on Dynamic Energy Budgets with satellite-derived environmental data (i.e. temperature and food). After a...
Tipo: Text Palavras-chave: Mussel; DEB; SeaWifs; Aquaculture; Site Selection; Resource Management.
Ano: 2011 URL: http://archimer.ifremer.fr/doc/00037/14836/14537.pdf
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