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| Xing, Xiaogang; Claustre, Herve; Boss, Emmanuel; Roesler, Collin; Organelli, Emanuele; Poteau, Antoine; Barbieux, Marie; D'Ortenzio, Fabrizio. |
| In situ chlorophyll fluorometers have been widely employed for more than half a century, and to date, it still remains the most used instrument to estimate chlorophyll-a concentration in the field, especially for measurements onboard autonomous observation platforms, e.g., Bio-Argo floats and gliders. However, in deep waters (> 300 m) of some specific regions, e.g., subtropical gyres and the Black Sea, the chlorophyll fluorescence profiles frequently reveal "deep sea red fluorescence" features. In line with previous studies and through the analysis of a large data set (cruise transect in the South East Pacific and data acquired by 82 Bio-Argo floats), we show that the fluorescence signal measured by a humic-like DOM fluorometer is highly correlated to... |
| Tipo: Text |
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| Ano: 2017 |
URL: https://archimer.ifremer.fr/doc/00661/77327/78783.pdf |
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| Maze, Guillaume; Cabanes, Cecile; Coatanoan, Christine; D'Ortenzio, Fabrizio; Lebreton, Nathanaele; Le Reste, Serge; Le Traon, Pierre-yves; Mamaca, Emina; Pouliquen, Sylvie; Thierry-theetten, Virginie. |
| Tipo: Text |
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| Ano: 2014 |
URL: http://archimer.ifremer.fr/doc/00180/29100/27514.pdf |
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| Palmiéri, Julien; Dutay, Jean-claude; D'Ortenzio, Fabrizio; Houpert, Loïc; Mayot, Nicolas; Bopp, Laurent. |
| Ocean bioregions are generally defined using remotely-sensed sea surface chlorophyll fields, based on the assumption that surface chlorophyll is representative of euphotic layer phytoplankton biomass. Here we investigate the impact of subsurface phytoplankton dynamics on the characterisation of ocean bioregions. The Mediterranean Sea is known for its contrasting bioregimes despite its limited area, and represents an appropriate case for this study. We modelled this area using a high resolution regional dynamical model, NEMO-MED12, coupled to a biogeochemical model, PISCES, and focused our analysis on the bioregions derived from lower trophic levels. Validated by satellite and Biogeochemical-Argo float observations, our model shows that chlorophyll... |
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| Ano: 2018 |
URL: https://archimer.ifremer.fr/doc/00471/58219/60723.pdf |
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| Reverdin, Gilles; Thierry, Virginie; Utiz, Julia; D'Ortenzio, Fabrizio; Bradshaw, Elizabeth; Pfeil, Benjamin. |
| The purpose of task 1 in WP7 in AtlantOS project is to harmonize data exchange and data processing procedures for the EOVs that are acquired by multiple networks. In this framework, the present report [D7.2] establishes recommendations for automatic quality control procedures in Near RT (a few hours to several days) for the core of 7 EOVs (measured by more than one of Networks involved in AtlantOS): • Physics : temperature (T), Salinity (T), Current for surface and subsurface and Sea level • Biogeochemistry : Oxygen (O2), Chlorophyll-A, Nitrate (NO3) and Carbon (pCO2) for surface and subsurface The recommendations have been compiled by experts on those EOVs and validated by the Networks acquiring those EOVs in NRT (link with WP2, WP3 and WP4). These... |
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| Ano: 2017 |
URL: http://archimer.ifremer.fr/doc/00371/48244/48379.pdf |
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| Le Traon, Pierre-yves; D'Ortenzio, Fabrizio; Babin, Marcel; Leymarie, Edouard; Marec, Claudie; Pouliquen, Sylvie; Thierry, Virginie; Cabanes, Cecile; Claustre, Hervé; Desbruyeres, Damien; Lacour, Leo; Lagunas, Jose-luis; Maze, Guillaume; Mercier, Herle; Penkerc'H, Christophe; Poffa, Noe; Poteau, Antoine; Prieur, Louis; Racape, Virginie; Randelhoff, Achim; Rehm, Eric; Schmechtig, Catherine Marie; Taillandier, Vincent; Wagener, Thibaut; Xing, Xiaogang. |
| Argo, the international array of profiling floats, is a major component of the global ocean and climate observing system. In 2010, the NAOS (Novel Argo Observing System) project was selected as part of the French “Investissements d’Avenir” Equipex program. The objectives of NAOS were to consolidate the French contribution to Argo’s core mission (global temperature and salinity measurements down to 2000 m), and also to develop the future generation of French Argo profiling floats and prepare the next phase of the Argo program with an extension to the deep ocean (Deep Argo), biogeochemistry (BGC-Argo) and polar seas. This paper summarizes how NAOS has met its objectives. The project significantly boosted France’s contribution to Argo’s core mission by... |
| Tipo: Text |
Palavras-chave: Profiling floats; Deep ocean; Biogeochemistry; Mediterranean Sea; Arctic; Atlantic; Argo. |
| Ano: 2020 |
URL: https://archimer.ifremer.fr/doc/00654/76584/77729.pdf |
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| D'Ortenzio, Fabrizio; Lavigne, Heloise; Besson, Florent; Claustre, Herve; Coppola, Laurent; Garcia, Nicole; Laes-huon, Agathe; Le Reste, Serge; Malarde, Damien; Migon, Christophe; Morin, Pascal; Mortier, Laurent; Poteau, Antoine; Prieur, Louis; Raimbault, Patrick; Testor, Pierre. |
| Two profiling floats, equipped with nitrate concentration sensors were deployed in the northwestern Mediterranean from summer 2012 to summer 2013. Satellite ocean color data were extracted to evaluate surface chlorophyll concentration at float locations. Time series of mixed layer depths and nitrate and chlorophyll concentrations were analyzed to characterize the interplay between the physical-chemical and biological dynamics in the area. Deep convection (mixed layer depth > 1000 m) was observed in January–February, although high-nitrate surface concentrations could be already observed in December. Chlorophyll increase is observed since December, although high values were observed only in March. The early nitrate availability in subsurface layers, which... |
| Tipo: Text |
Palavras-chave: Bio-Argo; Mediterranean; Mixed layer; Bloom onset; Nitrate concentration; Ocean color satellite. |
| Ano: 2014 |
URL: http://archimer.ifremer.fr/doc/00211/32225/30673.pdf |
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| Schmechtig, Catherine; Poteau, Antoine; Claustre, Herve; D'Ortenzio, Fabrizio; Buck, Justin; Carval, Thierry. |
| In the context of the Bio-Argo program, a significant number of "new" biogeochemical variables are now candidate to be delivered through the Argo data stream. These variables are nitrate concentration, dissolved oxygen concentration, Chla concentration, backscattering coefficient, pH and radiometric data. Compared to the core Argo mission (P, T and 5), this diversity of new variable forces the community of biogeochemists to be very careful with respect to data management. Since three years, the community of biogeochemists thus actively participate to Argo data management meetings, in order to develop procedure for biogeochemical data compliant with Argo requirements regarding distribution policy, format, quality assessment and documentation. We illustrate... |
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| Ano: 2015 |
URL: http://archimer.ifremer.fr/doc/00254/36542/35084.pdf |
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| Schmechtig, Catherine; Poteau, Antoine; Claustre, Hervé; D'Ortenzio, Fabrizio; Boss, Emmanuel. |
| This document does NOT address the issue of chlorophyll-a quality control (either real-time or delayed mode). As a preliminary step towards that goal, this document seeks to ensure that all countries deploying floats equipped with chlorophyll-a sensors document the data and metadata related to these floats properly. We produced this document in response to action item 3 from the first Bio-Argo Data Management meeting in Hyderabad (November 12-13, 2012). If the recommendations contained herein are followed, we will end up with a more uniform set of chlorophyll-a data within the Bio-Argo data system, allowing users to begin analyzing not only their own chlorophyll-a data, but also those of others, in the true spirit of Argo data sharing. |
| Tipo: Text |
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| Ano: 2015 |
URL: https://archimer.ifremer.fr/doc/00283/39468/37945.pdf |
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| Taillandier, Vincent; Prieur, Louis; D'Ortenzio, Fabrizio; Ribera D'Alcala, Maurizio; Pulido-villena, Elvira. |
| Characterizing the spatio-temporal arrangements of inorganic nutrients is critical to improve our understanding of the marine biological primary production. Among the processes contributing to nutrient distributions, diapycnal diffusion plays a crucial role for the supply of nutrients to the surface productive zone, and for the equilibration of vertical differences in nutrient concentrations induced by large scale thermohaline circulation. This is the case in the western Mediterranean Sea, where Levantine intermediate waters (LIW), that circulate below the surface layer, regionally distribute the nutrient stocks conveyed from the eastern basin or provided by terrestrial inputs, atmospheric deposition, and remineralization of organic matter. In the present... |
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| Ano: 2020 |
URL: https://archimer.ifremer.fr/doc/00603/71558/69978.pdf |
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| Tamburini, Christian; Canals, Miquel; Durrieu De Madron, Xavier; Houpert, Loic; Lefevre, Dominique; Martini, Séverine; D'Ortenzio, Fabrizio; Robert, Anne; Testor, Pierre; Aguilar, Juan Antonio; Al Samarai, Imen; Albert, Arnaud; Andre, Michel; Anghinolfi, Marco; Anton, Gisela; Anvar, Shebli; Ardid, Miguel; Assis Jesus, Ana Carolina; Astraatmadja, Tri L.; Aubert, Jean-jacques; Baret, Bruny; Basa, Stephane; Bertin, Vincent; Biagi, Simone; Bigi, Armando; Bigongiari, Ciro; Bogazzi, Claudio; Bou-cabo, Manuel; Bouhou, Boutayeb; Bouwhuis, Mieke C.; Brunner, Jurgen; Busto, Jose; Camarena, Francisco; Capone, Antonio; Carloganu, Christina; Carminati, Giada; Carr, John; Cecchini, Stefano; Charif, Ziad; Charvis, Philippe; Chiarusi, Tommaso; Circella, Marco; Coniglione, Rosa; Costantini, Heide; Coyle, Paschal; Curtil, Christian; Decowski, Patrick; Dekeyser, Ivan; Deschamps, Anne; Donzaud, Corinne; Dornic, Damien; Dorosti, Hasankiadeh Q.; Drouhin, Doriane; Eberl, Thomas; Emanuele, Umberto; Ernenwein, Jean-pierre; Escoffier, Stephanie; Fermani, Paolo; Ferri, Marcelino; Flaminio, Vincenzo; Folger, Florian; Fritsch, Ulf; Fuda, Jean-luc; Galata, Salvatore; Gay, Pascal; Giacomelli, Giorgio; Giordano, Valentina; Gomez-gonzalez, Juan-pablo; Graf, Kay; Guillard, Goulven; Halladjian, Garadeb; Hallewell, Gregory; Van Haren, Hans; Hartman, Joris; Heijboer, Aart J.; Hello, Yann; Hernandez-rey, Juan Jose; Herold, Bjoern; Hossl, Jurgen; Hsu, Ching-cheng; De Jong, Marteen; Kadler, Matthias; Kalekin, Oleg; Kappes, Alexander; Katz, Uli; Kavatsyuk, Oksana; Kooijman, Paul; Kopper, Claudio; Kouchner, Antoine; Kreykenbohm, Ingo; Kulikovskiy, Vladimir; Lahmann, Robert; Lamare, Patrick; Larosa, Giuseppina; Lattuada, Dario; Lim, Gordon; Lo Presti, Domenico; Loehner, Herbert; Loucatos, Sotiris; Mangano, Salvatore; Marcelin, Michel; Margiotta, Annarita; Martinez-mora, Juan Antonio; Meli, Athina; Montaruli, Teresa; Moscoso, Luciano; Motz, Holger; Neff, Max; Nezri, Emmanuel; Palioselitis, Dimitris; Pavalas, Gabriela E.; Payet, Kevin; Payre, Patrice; Petrovic, Jelena; Piattelli, Paolo; Picot-clemente, Nicolas; Popa, Vlad; Pradier, Thierry; Presani, Eleonora; Racca, Chantal; Reed, Corey; Riccobene, Giorgio; Richardt, Carsten; Richter, Roland; Riviere, Colas; Roensch, Kathrin; Rostovtsev, Andrei; Ruiz-rivas, Joaquin; Rujoiu, Marius; Russo, Valerio G.; Salesa, Francisco; Sanchez-losa, Augustin; Sapienza, Piera; Schock, Friederike; Schuller, Jean-pierre; Schussler, Fabian; Shanidze, Rezo; Simeone, Francesco; Spies, Andreas; Spurio, Maurizio; Steijger, Jos J. M.; Stolarczyk, Thierry; Taiuti, Mauro G. F.; Toscano, Simona; Vallage, Bertrand; Van Elewyck, Veronique; Vannoni, Giulia; Vecchi, Manuela; Vernin, Pascal; Wijnker, Guus; Wilms, Jorn; De Wolf, Els; Yepes, Harold; Zaborov, Dmitry; Zornoza, Juan De Dios; Zuniga, Juan. |
| The deep ocean is the largest and least known ecosystem on Earth. It hosts numerous pelagic organisms, most of which are able to emit light. Here we present a unique data set consisting of a 2.5-year long record of light emission by deep-sea pelagic organisms, measured from December 2007 to June 2010 at the ANTARES underwater neutrino telescope in the deep NW Mediterranean Sea, jointly with synchronous hydrological records. This is the longest continuous time-series of deep-sea bioluminescence ever recorded. Our record reveals several weeks long, seasonal bioluminescence blooms with light intensity up to two orders of magnitude higher than background values, which correlate to changes in the properties of deep waters. Such changes are triggered by the... |
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| Ano: 2013 |
URL: https://archimer.ifremer.fr/doc/00241/35256/33831.pdf |
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| Schmechtig, Catherine; Organelli, Emanuele; Poteau, Antoine; Claustre, Hervé; D'Ortenzio, Fabrizio. |
| In the open ocean, Colored Dissolved Organic Matter (CDOM) is the fraction of the total Dissolved Organic Matter (DOM), composed by a mixture of chemically complex algal degradation products that interact with light. CDOM absorbs solar radiation in the UV and visible ranges (Bricaud et al., 1981) and, if illuminated, re-emits light as fluorescence (i.e., FDOM; Coble 1996). These optical measurements can be used as proxies of CDOM concentration. Whereas CDOM absorption measurements are given by the entire pool of the organic matter, FDOM measurements detect only sub-fractions. Depending on excitation and emission wavelengths of the fluorometer, FDOM can represent the fresh-material produced by microbial degradation of phytoplankton cells and/or from... |
| Tipo: Text |
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| Ano: 2017 |
URL: http://archimer.ifremer.fr/doc/00434/54541/55910.pdf |
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| Leymarie, Edouard; Penkerc'H, Christophe; Vellucci, Vincenzo; Lerebourg, Christophe; Antoine, David; Boss, Emmanuel; Lewis, Marion R.; D'Ortenzio, Fabrizio; Claustre, Herve. |
| An efficient system to produce in situ high quality radiometric measurements is compulsory to rigorously perform the vicarious calibration of satellite sensors dedicated to Ocean Color Radiometry (OCR) and to validate their derived products. This requirement is especially needed during the early stages of an OCR satellite activity or for remote areas poorly covered by oceanographic cruises with possible bio-optical anomalies. Taking advantage of Argo's profiling float technology, we present a new autonomous profiling float dedicated to in situ radiometric measurements. The float is based on the Provor CTS5 (manufacturer NKE) with an added novel two protruding arm design allowing for sensor redundancies, shading mitigation and near-surface data. Equipped... |
| Tipo: Text |
Palavras-chave: Autonomous profiling floats; Remote sensing reflectance; Ocean color; Validation; System vicarious calibration; Austral ocean; Mediterranean Sea; Radiometric measurement. |
| Ano: 2018 |
URL: https://archimer.ifremer.fr/doc/00585/69694/67579.pdf |
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| Organelli, Emanuele; Barbieux, Marie; Claustre, Herve; Schmechtig, Catherine; Poteau, Antoine; Bricaud, Annick; Boss, Emmanuel; Briggs, Nathan; Dall'Olmo, Giorgio; D'Ortenzio, Fabrizio; Leymarie, Edouard; Mangin, Antoine; Obolensky, Grigor; Penkerc'H, Christophe; Prieur, Louis; Roesler, Collin; Serra, Romain; Uitz, Julia; Xing, Xiaogang. |
| Since 2012, an array of 105 Biogeochemical-Argo (BGC-Argo) floats has been deployed across the world's oceans to assist in filling observational gaps that are required for characterizing open-ocean environments. Profiles of biogeochemical (chlorophyll and dissolved organic matter) and optical (single-wavelength particulate optical backscattering, downward irradiance at three wavelengths, and photosynthetically available radiation) variables are collected in the upper 1000 m every 1 to 10 days. The database of 9837 vertical profiles collected up to January 2016 is presented and its spatial and temporal coverage is discussed. Each variable is quality controlled with specifically developed procedures and its time series is quality-assessed to identify issues... |
| Tipo: Text |
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| Ano: 2017 |
URL: https://archimer.ifremer.fr/doc/00662/77389/79010.pdf |
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| Maze, Guillaume; Cabanes, Cecile; Carval, Thierry; Claustre, Hervé; Coatanoan, Christine; D'Ortenzio, Fabrizio; Kolodziejczyk, Nicolas; Lebreton, Nathanaele; Le Reste, Serge; Le Traon, Pierre-yves; Poteau, Antoine; Poffa, Noe; Pouliquen, Sylvie; Schmechtig, Catherine; Thierry, Virginie. |
| Tipo: Text |
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| Ano: 2019 |
URL: https://archimer.ifremer.fr/doc/00484/59523/62497.pdf |
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| Taillandier, Vincent; Wagener, Thibaut; D'Ortenzio, Fabrizio; Mayot, Nicolas; Legoff, Herve; Ras, Josephine; Coppola, Laurent; Pasqueron De Fommervault, Orens; Schmechtig, Catherine; Diamond, Emilie; Bittig, Henry; Lefevre, Dominique; Leymarie, Edouard; Poteau, Antoine; Prieur, Louis. |
| We report on data from an oceanographic cruise, covering western, central and eastern parts of the Mediterranean Sea, on the French research vessel Tethys 2 in May 2015. This cruise was fully dedicated to the maintenance and the metrological verification of a biogeochemical observing system based on a fleet of BGC-Argo floats. During the cruise, a comprehensive data set of parameters sensed by the autonomous network was collected. The measurements include ocean currents, seawater salinity and temperature, and concentrations of inorganic nutrients, dissolved oxygen and chlorophyll pigments. The analytical protocols and data processing methods are detailed, together with a first assessment of the calibration state for all the sensors deployed during the... |
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| Ano: 2018 |
URL: https://archimer.ifremer.fr/doc/00677/78943/81333.pdf |
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| Johnson, Ken; Pasqueron De Fommervault, Orens; Serra, Romain; D'Ortenzio, Fabrizio; Schmechtig, Catherine; Claustre, Hervé; Poteau, Antoine. |
| The only method used to date to measure dissolved nitrate concentration (NITRATE) with sensors mounted on profiling floats is based on the absorption of light at ultraviolet wavelengths by nitrate ion (Johnson and Coletti, 2002; Johnson et al., 2010; 2013; D’Ortenzio et al., 2012). Nitrate has a modest UV absorption band with a peak near 210 nm, which overlaps with the stronger absorption band of bromide, which has a peak near 200 nm. In addition, there is a much weaker absorption due to dissolved organic matter and light scattering by particles (Ogura and Hanya, 1966). The UV spectrum thus consists of three components, bromide, nitrate and a background due to organics and particles. The background also includes thermal effects on the instrument and slow... |
| Tipo: Text |
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| Ano: 2018 |
URL: http://archimer.ifremer.fr/doc/00350/46121/55922.pdf |
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| Caputi, Luigi; Carradec, Quentin; Eveillard, Damien; Kirilovsky, Amos; Pelletier, Eric; Karlusich, Juan J. Pierella; Vieira, Fabio Rocha Jimenez; Villar, Emilie; Chaffron, Samuel; Malviya, Shruti; Scalco, Eleonora; Acinas, Silvia G.; Alberti, Adriana; Aury, Jean-marc; Benoiston, Anne-sophie; Bertrand, Arnaud; Biard, Tristan; Bittner, Lucie; Boccara, Martine; Brum, Jennifer R.; Brunet, Cedric; Busseni, Greta; Carratala, Anna; Claustre, Herve; Coelho, Luis Pedro; Colin, Sbastien; D'Aniello, Salvatore; Da Silva, Corinne; Del Core, Marianna; Dore, Hugo; Gasparini, Stephane; Kokoszka, Florian; Jamet, Jean-louis; Lejeusne, Christophe; Lepoivre, Cyrille; Lescot, Magali; Lima-mendez, Gipsi; Lombard, Fabien; Lukes, Julius; Maillet, Nicolas; Madoui, Mohammed-amin; Martinez, Elodie; Mazzocchi, Maria Grazia; Neou, Mario B.; Paz-yepes, Javier; Poulain, Julie; Ramondenc, Simon; Romagnan, Jean-baptiste; Roux, Simon; Manta, Daniela Salvagio; Sanges, Remo; Speich, Sabrina; Sprovieri, Mario; Sunagawa, Shinichi; Taillandier, Vincent; Tanaka, Atsuko; Tirichine, Leila; Trottier, Camille; Uitz, Julia; Veluchamy, Alaguraj; Vesela, Jana; Vincent, Flora; Yau, Sheree; Kandels-lewis, Stefanie; Searson, Sarah; Dimier, Cline; Picheral, Marc; Bork, Peer; Boss, Emmanuel; De Vargas, Colomban; Follows, Michael J.; Grimsley, Nigel; Guidi, Lionel; Hingamp, Pascal; Karsenti, Eric; Sordino, Paolo; Stemmann, Lars; Sullivan, Matthew B.; Tagliabue, Alessandro; Zingone, Adriana; Garczarek, Laurence; D'Ortenzio, Fabrizio; Testor, Pierre; Not, Fabrice; D'Alcala, Maurizio Ribera; Wincker, Patrick; Bowler, Chris; Iudicone, Daniele; Gorsky, Gabriel; Jaillon, Olivier; Karp-boss, Lee; Krzic, Uros; Ogata, Hiroyuki; Pesant, Stephane; Raes, Jeroen; Reynaud, Emmanuel G.; Sardet, Christian; Sieracki, Mike; Velayoudon, Didier; Weissenbach, Jean. |
| Predicting responses of plankton to variations in essential nutrients is hampered by limited in situ measurements, a poor understanding of community composition, and the lack of reference gene catalogs for key taxa. Iron is a key driver of plankton dynamics and, therefore, of global biogeochemical cycles and climate. To assess the impact of iron availability on plankton communities we explored the comprehensive bio‐oceanographic and ‐omics datasets from Tara Oceans in the context of the iron products from two state‐of‐the‐art global scale biogeochemical models. We obtained novel information about adaptation and acclimation towards iron in a range of phytoplankton, including picocyanobacteria and diatoms, and identified whole sub‐communities co‐varying with... |
| Tipo: Text |
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| Ano: 2019 |
URL: https://archimer.ifremer.fr/doc/00475/58680/61184.pdf |
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| Le Reste, Serge; Andre, Xavier; Claustre, Herve; D'Ortenzio, Fabrizio; Poteau, Antoine. |
| The anthropogenic greenhouse effect and the associated temperature rise of the planet represent the main challenging issue for the Earth sciences of the next century. Marine ecosystems are a key component of the Earth system, as they modulate the transfer of greenhouse gases (mainly CO2) to the ocean surface. Moreover, oceanic ecosystems mitigate the effects of anthropogenic carbon injection into the atmosphere, via the so-called “biological pump”. Ocean biogeochemistry is hence confronted to a major challenge: the determination of the extent and efficiency of the climatic feedback of the carbon “biological pump” within the context of climate change. A new type of float, the “ProvBio”, has been developed jointly by Ifremer and the French company KANNAD,... |
| Tipo: Text |
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| Ano: 2009 |
URL: http://archimer.ifremer.fr/doc/00219/32998/31455.pdf |
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