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La détermination de l'âge par scalimétrie chez le saumon atlantique (Salmo salar) dans son aire de répartition méridionale : utilisation pratique et difficultés de la méthode ArchiMer
Baglinière, J. L.; Bomassi, P.; Bousquet, B.; Chancerel, F.; De Pontual, Helene; Dumas, J.; Euzenat, G.; Fontenelle, G.; Fournel, F.; Gayou, F.; Luquet, J. F.; Maisse, G.; Martin Ventura, J. A.; Marty, A.; Nihouarn, A.; Porcher, J. P.; Prevost, E.; Prouzet, Patrick; Pustelnik, G.; Richard, A.; Troadec, Herve.
This report confirms interpretation criteria used in scale reading for age determination of Atlantic Salmon in freshwater and in sea water with typical examples. The difficulties for age determination of wild and reared populations by showing atypical examples are presented. Finally some recommandations to a better knowledge of Atlantic salmon population in south distribution area are proposed.
Tipo: Text
Ano: 1985 URL: https://archimer.ifremer.fr/doc/00480/59127/61755.pdf
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Aide à l'estimation des stocks d'huîtres en élevage par télédétection basse altitude: étude de faisabilité ArchiMer
De Pontual, Helene.
Existing methods to assess the biomass of reared oyster's stocks are ail based on aerial photographs and field data. In this study, we propose an automatic processing of the digitized aerial photographs making use of advanced vision tools such as mathematical morphology. The implemented a1gorithms are described. They give enough convincing results to suggest further developments. However, this method requires the use of digital images. To this respect, a part of this paper deals with data acquisition problems. We particularly study the feasibility of using airborne video recording system. Such device should give a quite accurate information, easier to process than the classical aerial photographs.
Tipo: Text Palavras-chave: Huître; Estimation des stocks; Photographie aérienne; Vidéo aéroportée; Analyse d'images numériques; Oysters; Stock assessment; Aerial pholographs; Airborne videography; Digital image processing.
Ano: 1989 URL: http://archimer.ifremer.fr/doc/00105/21669/19247.pdf
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A review of image-based tools for automatic fish ageing from otolith features ArchiMer
Carbini, Sebastien; Chessel, Anatole; Benzinou, Abdesslam; Fablet, Ronan; Mahe, Kelig; De Pontual, Helene.
Most of European fish stocks are assessed using age-based models, and otolith interpretation for age estimations costs several million euros annually. In this context, automated ageing systems would provide a mean to 1) standardize ageing, 2) control ageing consistency within and between ageing laboratories 3) build interpreted image data bases ensuring the information conservation and sharing and 4) improve growth studies while reducing the cost of the acquisition of age data. This paper presents a review of different image-based tools for automatic fish ageing from otolith features within the framework of AFISA (EU STREP project on Automated FISh Ageing coordinated by Ifremer). The full automatic ageing process can be divided into three main steps: 1)...
Tipo: Text
Ano: 2008 URL: http://archimer.ifremer.fr/doc/00024/13519/10546.pdf
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Effects of T-bar and DST Tagging on Survival and Growth of European Hake ArchiMer
Jolivet, Aurelie; De Pontual, Helene; Garren, Francois; Begout, Marie-laure.
Controlled experiments were conducted to assess the effects of T-bar and DST tagging on post-release survival and growth of European hake. In this study, two groups of each 30 hake were considered: small fish (SF, average total length: 29.9 cm +/- 2.2 cm) and large fish (LF, average total length: 36.4 cm +/- 2.5 cm). Within each size group, fish were randomly assigned to one of 3 treatment groups: control (C), T-bar tagging referred as conventional tagging (CT) and DST tagging (DST) with dummy tags. After 4 months, the overall survival rate was 35%. Smaller fish were less impacted by the stress induced by handling, anaesthesia and tagging and in the SF group, the survival rates were similar (30%) for CT or DST. Specific growth rates were highly variable...
Tipo: Text Palavras-chave: Merluccius merluccius; Archival tag; Husbandry; Midterm experiment; Captive hake.
Ano: 2009 URL: http://archimer.ifremer.fr/doc/00065/17645/15196.pdf
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Growth of European hake (Merluccius merluccius) in the Gulf of Lions based on conventional tagging ArchiMer
Mellon-duval, Capucine; De Pontual, Helene; Metral, Luisa; Quemener, Loic.
Growth of European hake was estimated from the results of a conventional tagging study in the Gulf of Lions, the first tagging experiment to have been undertaken on the species in Mediterranean waters. In all, 4277 hake 15–40 cm long were tagged and released on the inshore fishing grounds during spring 2006. The overall recapture rate was 6.5% and times-at-liberty ranged from 1 to 717 d. Growth rate in hake varied with size and sex. The estimated growth parameter (von Bertalanffy k) was estimated as double previously published values based on size frequency distribution in the area. Compared with recent growth parameters derived from the tagging experiments in the Bay of Biscay, k was estimated to be slightly lower in the Gulf of Lions. With this faster...
Tipo: Text Palavras-chave: Age estimation; European hake; Growth; Mediterranean; Tagging.
Ano: 2010 URL: http://archimer.ifremer.fr/doc/00000/11134/11532.pdf
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Analyse des potentielles mesures de gestion du bar ArchiMer
Le Goff, Ronan; Drogou, Mickael; De Pontual, Helene; Talidec, Catherine; Berthou, Patrick; Biseau, Alain.
Une réunion technique a été organisée le 21 mai 2013 par la Commission européenne afin de faire le point sur l’état du stock de bar commun (Dicentrarchus labrax) dans les eaux européennes de l’Atlantique du Nord Est. Cette réunion a conclu que le stock de bar peut être considéré comme dans un état « alarmant », et la Commission a demandé aux Etats membres d’identifier les mesures de gestion qu’ils seraient à même de mettre en place dans les meilleurs délais pour obtenir une diminution des captures de 20%. C’est dans ce contexte que la DPMA a adressé à l’Ifremer la présente saisine, en attendant plus particulièrement de l’Institut : - de lister les mesures concrètes applicables aux pêcheries françaises et permettant de réduire les captures et donc la...
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Ano: 2013 URL: https://archimer.ifremer.fr/doc/00165/27657/25827.pdf
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Synthèse des informations disponibles sur le Bar : flottilles, captures, marché ArchiMer
Drogou, Mickael; Biseau, Alain; Berthou, Patrick; De Pontual, Helene; Habasque, Jeremie; Le Grand, Christelle; Pitel-roudaut, Mathilde.
Les résultats de ce travail sont établis en France métropolitaine (façades Manche/ Mer du Nord / Atlantique. La structure du rapport comprend d’une part une présentation des données disponibles en 2009 de la pêche professionnelle inscrite au fichier Flotte de Pêche Communautaire (FPC), et d’autre part les résultats de la dernière enquête sur la pêche plaisance réalisée entre 2009 et 2011. En fin de document une présentation des conclusions du groupe de travail du CIEM (WGNEW 2010) est faite en indiquant les données manquantes à collecter pour l’amélioration des diagnostics. Une réflexion concernant les mesures de gestion est ensuite menée à l’aide des résultats disponibles.
Tipo: Text
Ano: 2011 URL: http://archimer.ifremer.fr/doc/00035/14577/11879.pdf
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SYstème de BIOmétrie Larvaire de bivalves par analyse d'images ArchiMer
De Pontual, Helene.
SYBIOL, SYstem of BIOmetry of Larvae by image analysis, has been designed for measuring larvae of bivalves in a semi automatic way. The main interest of this tool is to provide more information with the extraction of parameters such as area or equivalent diameter. Our purposes are to describe and evaluate the system which is now operational and used in routine in the mollusc hatchery of Argenton.
Tipo: Text Palavras-chave: Croissance; Elevages larvaires; Mollusques; Analyse d'images; Growth; Larval rearing; Molluscs; Image analysis.
Ano: 1994 URL: http://archimer.ifremer.fr/doc/00451/56302/57890.pdf
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Manual of Fish Sclerochronology ArchiMer
Panfili, Jacques; De Pontual, Helene; Troadec, Herve; Wrigh, Peter J..
Sclerochronology, the study of calcified structures to reconstruct the past history of living organisms, is central to fish biology and fisheries management. This manual aims to provide an overview of the current theoretical and practical aspects of sclerochronological studies. By providing information on the nature of calcified structures (otoliths, scales, skeleton), their uses in fish research and methods for preparation and examination, the manual constitutes a comprehensive guide for researchers, technicians and students either new to the field or interested in expanding their range of expertise. The enclosed multimedia version (DVD) is supplemented by videos illustrating the main technical procedures with an alternative navigation mode based on...
Tipo: Text Palavras-chave: Age; Age determination; Biological aging; Chemistry; Growth; Otolith reading; Otoliths; Scale reading; Scales; Skeleton.
Ano: 2002 URL: http://archimer.ifremer.fr/doc/00017/12801/9742.pdf
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Coupling spectral analysis and hidden Markov models for the segmentation of behavioural patterns ArchiMer
Heerah, Karine; Woillez, Mathieu; Fablet, Ronan; Garren, Francois; Martin, Stephane; De Pontual, Helene.
Background Movement pattern variations are reflective of behavioural switches, likely associated with different life history traits in response to the animals’ abiotic and biotic environment. Detecting these can provide rich information on the underlying processes driving animal movement patterns. However, extracting these signals from movement time series, requires tools that objectively extract, describe and quantify these behaviours. The inference of behavioural modes from movement patterns has been mainly addressed through hidden Markov models. Until now, the metrics implemented in these models did not allow to characterize cyclic patterns directly from the raw time series. To address these challenges, we developed an approach to i) extract new metrics...
Tipo: Text Palavras-chave: Fourier transform; Non negative matrix factorization; Classification; Animal behaviour; European sea bass; Movement ecology; Diurnal and tidal cycles; Biologging; Data storage tags.
Ano: 2017 URL: https://archimer.ifremer.fr/doc/00402/51400/51974.pdf
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Do environmental conditions (temperature and food composition) affect otolith shape during fish early-juvenile phase? An experimental approach applied to European Seabass (Dicentrarchus labrax) ArchiMer
Mahé, Kelig; Gourtay, Clemence; Bled--defruit, Geoffrey; Chantre, Celina; De Pontual, Helene; Amara, Rachid; Claireaux, Guy; Audet, C.; Zambonino-infante, Jose-luis; Ernande, Bruno.
Otolith shape is an efficient tool for fish stock discrimination. Therefore, it is crucial to identify the environmental parameters that could influence otolith morphogenesis and growth. Current global ocean warming negatively affects the production of polyunsaturated fatty acids (EPA and DHA) by phytoplankton and thus their availability in marine food webs. As EPA and DHA are essential nutrients for most fish species, their deficiency could affect many aspects of fish physiology, notably otolith morphogenesis. The goal of this study was to assess experimentally the combined influences of temperature (T) and dietary polyunsaturated fatty acid (PUFA) content on European seabass (Dicentrarchus labrax) otolith morphogenesis during early life stages. 300...
Tipo: Text Palavras-chave: N-3 polyunsaturated fatty acids; Otolith shape; Temperature effect; Elliptic Fourier descriptors; Multivariate mixed-effects models; Directional asymmetry.
Ano: 2019 URL: https://archimer.ifremer.fr/doc/00588/70054/68017.pdf
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New insights into behavioural ecology of European seabass off the West Coast of France: implications at local and population scales ArchiMer
De Pontual, Helene; Lalire, Maxime; Fablet, Ronan; Laspougeas, Claire; Garren, Francois; Martin, Stephane; Drogou, Mickael; Woillez, Mathieu.
From 2010 to 2012, 246 data storage tags were deployed on European seabass in the Iroise Natural Marine Park, a marine protected area (MPA) off west Brittany, France. A return rate of 14.6% associated with long time series of data provided new information on fish ecology (e.g. maximum experienced depth greater than 225 m, temperature range 6.80–21.87°C). Depth and temperature series were used to infer individual migration using an innovative hidden Markov model (HMM) especially developed for seabass geolocation. Reconstructed fish tracks revealed that seabass is a partially migratory species, as individuals exhibited either long-distance migrations towards the Bay of Biscay or the Celtic Sea, or residency behaviour in the Iroise Sea. Fidelity to summer...
Tipo: Text Palavras-chave: Cod; Connectivity; Data Storage Tag (DST); Depth; European sea bass; Dicentrarchus labrax; Geolocation; Partial migration; Spawning site fidelity; Temperature; Vertical movement.
Ano: 2019 URL: https://archimer.ifremer.fr/doc/00451/56230/57790.pdf
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Otolith growth in trout Oncorhynchus mykiss: supply of Ca2+ and Sr2+ to the saccular endolymph ArchiMer
Payan, P; Borelli, G; Priouzeau, F; De Pontual, Helene; Boeuf, G; Mayer Gostan, N.
Kinetic and pharmacological characteristics of Ca2+ fluxes across the saccular epithelium of trout were studied using a perfused isolated inner ear. Ca-45(2+) influx from the Ringer solution to the endolymph was 3-4 nmoles h(-1) mu(-1) endolymph, which corresponds to a global turnover rate of the endolymph calcium of 200% h(-1). Ca2+ entry into the proximal endolymph was faster than into the distal fluid. Net Ca2+ movement across the saccular epithelium depended on the direction and intensity of the chemical gradient of calcium between the Ringer solution and the endolymph. Increasing the calcium concentration in the Ringer solution up to 4.4 mmol l(-1) provoked an accumulation of Ca2+ in both proximal and distal endolymphs, and equilibrium was reached...
Tipo: Text Palavras-chave: Inner ear; Perfusion; Otolith; Endolymph; Flux; Calcium; Oncorhynchus mykiss; Trout.
Ano: 2002 URL: http://archimer.ifremer.fr/doc/2002/publication-416.pdf
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Comparison of 0- and 2-group otolith elemental signatures to discriminate Solea solea nurseries in the bay of biscay ArchiMer
Durieux, Eric D. H.; Labonne, Maylis; Begout, Marie-laure; De Pontual, Helene.
The common sole Solea solea (L.) is a commercially important and widely distributed flatfish of the North-East Atlantic. For the Bay of Biscay stock, sole nurseries display differences in terms of quantity and quality. In fine the measure of the quality of a habitat for juveniles of a particular species is expressed by the contribution to the recruitment into the adult population. Understanding this connectivity between juvenile and adult habitats, i.e. evaluating the contribution of each nursery to a single adult stock appears essential in terms of stock management. However, this critical link is still missing for the Bay of Biscay sole stock. Determining if nurseries could be discriminated using otolith elemental composition analysis constitutes the...
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Ano: 2011 URL: http://archimer.ifremer.fr/doc/00073/18377/15949.pdf
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Daily variations of the saccular endolymph and plasma compositions in the turbot Psetta maxima: relationship with the diurnal rhythm in otolith formation ArchiMer
Edeyer, Anaick; De Pontual, Helene; Payan, P; Troadec, Herve; Severe, Armelle; Mayer-gostan, N.
We studied the circadian variations of the ionic composition ([Na+], [K+], [Cl-]), total CO2 ([tot CO2]), and protein concentration ([protein]) in the plasma and endolymph in the distal and proximal sides of the sacculus in the turbot Psetta maxima. Daily variations in total plasma calcium ([tot Ga]) were also recorded. Significant diurnal fluctuations occurred in most parameters and the spatial heterogeneity of the endolymph composition was maintained throughout a 24 h period. The main parameters implicated in otolith calcification, endolymph [tot CO2] and endolymph [protein], fluctuated diurnally, [tot CO2] was highest and [protein] lowest at night; the relative concentrations were reversed during the day. The inverse, alternating relationship of maximal...
Tipo: Text Palavras-chave: Daily cycle; Endolymph; Otolith; Chemical composition; Teleost.
Ano: 2000 URL: http://archimer.ifremer.fr/doc/00000/10572/7603.pdf
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Diet is correlated with otolith shape in marine fish ArchiMer
Mille, Tiphaine; Mahe, Kelig; Cachera, Marie; Villanueva, Ching-maria; De Pontual, Helene; Ernande, Bruno.
Previous studies have shown that food amount influence fish otolith structure, opacity and shape and that diet composition has an effect on otolith chemical composition. This study investigated the potential correlation between diet and otolith shape in 5 wild marine fish species by addressing 4 complementary questions. First, is there a global relationship between diet and otolith shape? Second, which prey categories are involved in this relationship? Third, what are the respective contributions of food quantity and relative composition to diet–otolith shape co-variation? Fourth, is diet energetic composition related to otolith shape? For each species, we investigated how otolith shape varies with diet. These questions were tackled by describing diet in...
Tipo: Text Palavras-chave: Fourier analysis; English Channel; Interspecific; Morphometric analysis; Otolith growth; Saccular otolith; Stomach contents.
Ano: 2016 URL: https://archimer.ifremer.fr/doc/00345/45639/45269.pdf
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Preparation techniques alter the mineral and organic fractions of fish otoliths: insights using Raman micro-spectrometry ArchiMer
Jolivet, Aurelie; Fablet, Ronan; Bardeau, Jean-francois; De Pontual, Helene.
The high spatial resolution analysis of the mineral and organic composition of otoliths using Raman micro-spectrometry involves rigorous protocols for sample preparation previously established for microchemistry and trace elements analyses. These protocols often include otolith embedding in chemically neutral resin (i.e., resins which do not contain, in detectable concentration, elements usually sought in the otoliths). Such embedding may however induce organic contamination. In this paper, Raman micro-spectrometry reveals the presence of organic contamination onto the surface obtained from the use of epoxy resin, specifically Araldite. This contamination level varies depending on otolith structures. Core and checks, known as structural discontinuities,...
Tipo: Text Palavras-chave: Epoxy resin; Otolith composition; Microstructure; Raman spectrometry.
Ano: 2013 URL: http://archimer.ifremer.fr/doc/00138/24965/26372.pdf
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Bar commun ArchiMer
De Pontual, Helene; Drogou, Mickael.
Tipo: Text
Ano: 2018 URL: http://archimer.ifremer.fr/doc/00444/55575/57188.pdf
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Daily variations of endolymph composition: relationship with the otolith calcification process in trout ArchiMer
Borelli, G; Guibbohni, M; Mayer Gostan, N; Priouzeau, France; De Pontual, Helene; Allemand, D; Puverel, S; Tambutte, E; Payan, P.
Ionic and organic parameters of the otolith calcification process in the trout Oncorhynchus mykiss were analysed in plasma and endolymph over the day:night cycle. Plasma pH remained constant and total CO2 concentration was significantly lower (by 21%) during the day than at night. Calcifying parameters (total CO2, total calcium concentration) were measured in the proximal and distal endolymphs and were unchanged in the latter during the day:night cycle, but fluctuated in the former. Non-collagenous protein and collagen concentrations in endolymph were higher (1.5- and 10-fold, respectively) during the day than at night. As there was no change in total calcium concentration, we propose that Ca2+ increases during the dark period and was maximal by the end of...
Tipo: Text Palavras-chave: Endolymph; Day night cycle; Calcification; Otolith.
Ano: 2003 URL: https://archimer.ifremer.fr/doc/2003/publication-418.pdf
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Tag and recapture of European hake (Merluccius merluccius L.) off the Northwest Iberian Peninsula: First results support fast growth hypothesis ArchiMer
Pineiro, C; Rey, J; De Pontual, Helene; Goni, R.
In the first tagging experiment of European hake (Merluccius merluccius L.) conducted off the NW Iberian Peninsula to study hake growth in the wild we released 527 live tagged individuals. The survival rate after capture and tagging was 58%. Mortality during capture was positively correlated with depth of capture and negatively correlated with hake size. Fifteen months after tagging, seven individuals (1.3%) had been recaptured with times at liberty ranging from 29 to 466 days. We provide the first direct measurements of growth rates of Southern stock European hake in the wild and compare them with rates obtained from tagging experiments in other regions and with rates derived from conventional otolith age reading. The mean somatic growth rate of all...
Tipo: Text Palavras-chave: Northeast Atlantic; Age estimation; Tag recapture; Growth rates; European hake.
Ano: 2007 URL: http://archimer.ifremer.fr/doc/2007/publication-3525.pdf
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