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Registros recuperados: 66
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Isolation and no-entry marine reserves mitigate anthropogenic impacts on grey reef shark behavior ArchiMer
Juhel, Jean-baptiste; Vigliola, Laurent; Wantiez, Laurent; Letessier, Tom B.; Meeuwig, Jessica J.; Mouillot, David.
Reef sharks are vulnerable predators experiencing severe population declines mainly due to overexploitation. However, beyond direct exploitation, human activities can produce indirect or sub-lethal effects such as behavioral alterations. Such alterations are well known for terrestrial fauna but poorly documented for marine species. Using an extensive sampling of 367 stereo baited underwater videos systems, we show modifications in grey reef shark (Carcharhinus amblyrhynchos) occurrence and feeding behavior along a marked gradient of isolation from humans across the New Caledonian archipelago (South-Western Pacific). The probability of occurrence decreased by 68.9% between wilderness areas (more than 25 hours travel time from the capital city) and impacted...
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Ano: 2019 URL: https://archimer.ifremer.fr/doc/00483/59500/62369.pdf
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Trait structure and redundancy determine sensitivity to disturbance in marine fish communities ArchiMer
Mclean, Matthew; Auber, Arnaud; Graham, Nicholas A J; Houk, Peter; Villéger, Sébastien; Violle, Cyrille; Thuiller, Wilfried; Wilson, Shaun K.; Mouillot, David.
‘Functional’ diversity is believed to influence ecosystem dynamics through links between organismal traits and ecosystem processes. Theory predicts that key traits and high trait redundancy – large species richness and abundance supporting the same traits – can buffer communities against environmental disturbances. While experiments and data from simple ecological systems lend support, large‐scale evidence from diverse, natural systems under major disturbance is lacking. Here, using long‐term data from both temperate (English Channel) and tropical (Seychelles Islands) fishes, we show that sensitivity to disturbance depends on communities’ initial trait structure and initial trait redundancy. In both ecosystems, we found that increasing dominance by...
Tipo: Text Palavras-chave: Climate change; Coral reefs; Diversity stability; Ecological traits; Ecosystem functioning; English Channel; Functional diversity.
Ano: 2019 URL: https://archimer.ifremer.fr/doc/00490/60184/63525.pdf
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Global vulnerability of marine mammals to global warming ArchiMer
Albouy, Camille; Delattre, Valentine; Donati, Giulia; Frölicher, Thomas L.; Albouy-boyer, Severine; Rufino, Marta; Pellissier, Loïc; Mouillot, David; Leprieur, Fabien.
Although extinctions due to climate change are still uncommon, they might surpass those caused by habitat loss or overexploitation over the next few decades. Among marine megafauna, mammals fulfill key and irreplaceable ecological roles in the ocean, and the collapse of their populations may therefore have irreversible consequences for ecosystem functioning and services. Using a trait-based approach, we assessed the vulnerability of all marine mammals to global warming under high and low greenhouse gas emission scenarios for the middle and the end of the 21st century. We showed that the North Pacific Ocean, the Greenland Sea and the Barents Sea host the species that are most vulnerable to global warming. Future conservation plans should therefore focus on...
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Ano: 2020 URL: https://archimer.ifremer.fr/doc/00606/71791/70280.pdf
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A unifying quantitative framework for exploring the multiple facets of microbial biodiversity across diverse scales ArchiMer
Escalas, Arthur; Bouvier, Thierry; Mouchet, Maud A.; Leprieur, Fabien; Bouvier, Corinne; Troussellier, Marc; Mouillot, David.
Recent developments of molecular tools have revolutionized our knowledge of microbial biodiversity by allowing detailed exploration of its different facets and generating unprecedented amount of data. One key issue with such large datasets is the development of diversity measures that cope with different data outputs and allow comparison of biodiversity across different scales. Diversity has indeed three components: local (), regional () and the overall difference between local communities (). Current measures of microbial diversity, derived from several approaches, provide complementary but different views. They only capture the component of diversity, compare communities in a pairwise way, consider all species as equivalent or lack a mathematically...
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Ano: 2013 URL: http://archimer.ifremer.fr/doc/00163/27441/25668.pdf
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Spearfishing Regulation Benefits Artisanal Fisheries: The ReGS Indicator and Its Application to a Multiple-Use Mediterranean Marine Protected Area ArchiMer
Rocklin, Delphine; Tomasini, Jean-antoine; Culioli, Jean-michel; Pelletier, Dominique; Mouillot, David.
The development of fishing efficiency coupled with an increase of fishing effort led to the overexploitation of numerous natural marine resources. In addition to this commercial pressure, the impact of recreational activities on fish assemblages remains barely known. Here we examined the impact of spearfishing limitation on resources in a marine protected area (MPA) and the benefit it provides for the local artisanal fishery through the use of a novel indicator. We analysed trends in the fish assemblage composition using artisanal fisheries data collected in the Bonifacio Strait Natural Reserve (BSNR), a Mediterranean MPA where the spearfishing activity has been forbidden over 15% of its area. Fish species were pooled into three response groups according...
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Ano: 2011 URL: http://archimer.ifremer.fr/doc/00048/15914/13343.pdf
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Accumulation curves of environmental DNA sequences predict coastal fish diversity in the coral triangle ArchiMer
Juhel, Jean-baptiste; Utama, Rizkie S.; Marques, Virginie; Vimono, Indra B.; Sugeha, Hagi Yulia; Kadarusman,; Pouyaud, Laurent; Dejean, Tony; Mouillot, David; Hocdé, Régis.
Environmental DNA (eDNA) has the potential to provide more comprehensive biodiversity assessments, particularly for vertebrates in species-rich regions. However, this method requires the completeness of a reference database (i.e. a list of DNA sequences attached to each species), which is not currently achieved for many taxa and ecosystems. As an alternative, a range of operational taxonomic units (OTUs) can be extracted from eDNA metabarcoding. However, the extent to which the diversity of OTUs provided by a limited eDNA sampling effort can predict regional species diversity is unknown. Here, by modelling OTU accumulation curves of eDNA seawater samples across the Coral Triangle, we obtained an asymptote reaching 1531 fish OTUs, while 1611 fish species...
Tipo: Text Palavras-chave: EDNA metabarcoding; Sequence clustering; Operational Taxonomic Unit; Diversity assessment; Detectability.
Ano: 2020 URL: https://archimer.ifremer.fr/doc/00640/75232/79601.pdf
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Changes in the catch composition of artisanal fisheries attributable to dolphin depredation in a Mediterranean marine reserve ArchiMer
Rocklin, Delphine; Santoni, Marie-catherine; Culioli, Jean-michel; Tomasini, Jean-antoine; Pelletier, Dominique; Mouillot, David.
There is increasing evidence from previous studies, and from fishers' observations, that coastal dolphins use fishing nets as an easily accessible feeding source, damaging or depredating fish caught in the nets. This study investigates the impact of dolphin depredation on artisanal trammelnets by analysing the catch composition of 614 artisanal fishing operations in the Bonifacio Strait Natural Reserve (France). Common bottlenose dolphins (Tursiops truncatus) attacked, on average, 12.4% of the nets and damaged 8.3% of the catch. However, attacked nets were characterized by statistically significantly higher catch per unit effort than unattacked ones. Catch composition also differed significantly after dolphin attacks; bentho-pelagic fish were more...
Tipo: Text Palavras-chave: Marine protected area; Interactions with fisheries; Depredation; Catch per unit effort; Catch composition; Bottlenose dolphin; Artisanal fisheries.
Ano: 2009 URL: http://archimer.ifremer.fr/doc/2009/publication-6808.pdf
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Additive effects of climate change on connectivity between marine protected areas and larval supply to fished areas ArchiMer
Andrello, Marco; Mouillot, David; Somot, Samuel; Thuiller, Wilfried; Manel, Stephanie.
AimTo study the combined effects of climate change on connectivity between marine protected areas (MPAs) and larval supply to the continental shelf. LocationThe Mediterranean Sea, where sea surface temperatures are expected to strongly increase by the end of the 21st century, represents an archetypal situation with a dense MPA network but resource overexploitation outside. MethodsUsing an individual-based mechanistic model of larval transport, forced with an emission-driven regional climate change scenario for the Mediterranean Sea, we explored the combined effects of changes in hydrodynamics, adult reproductive timing and larval dispersal on the connectivity among MPAs and their ability to seed fished areas with larvae. ResultsWe show that, over the...
Tipo: Text Palavras-chave: Biophysical model; Conservation planning; Epinephelus marginatus; Larval dispersal; Larval growth rate; Reproductive timing.
Ano: 2015 URL: https://archimer.ifremer.fr/doc/00627/73867/73398.pdf
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Spatial graphs highlight how multi‐generational dispersal shapes landscape genetic patterns ArchiMer
Boulanger, Emilie; Dalongeville, Alicia; Andrello, Marco; Mouillot, David; Manel, Stéphanie.
Current approaches that compare spatial genetic structure of a given species and the dispersal of its mobile phase can detect a mismatch between both patterns mainly due to processes acting at different temporal scales. Genetic structure result from gene flow and other evolutionary and demographic processes over many generations, while dispersal predicted from the mobile phase often represents solely one generation on a single time‐step. In this study, we present a spatial graph approach to landscape genetics that extends connectivity networks with a stepping‐stone model to represent dispersal between suitable habitat patches over multiple generations. We illustrate the approach with the case of the striped red mullet Mullus surmuletus in the Mediterranean...
Tipo: Text Palavras-chave: Genetic connectivity; Mediterranean Sea; Mullus surmuletus; Seascape genetics; Spatial graphs; Stepping-stone dispersal.
Ano: 2020 URL: https://archimer.ifremer.fr/doc/00630/74166/73779.pdf
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Marine reserves lag behind wilderness in the conservation of key functional roles ArchiMer
D'Agata, Stephanie; Mouillot, David; Wantiez, Laurent; Friedlander, Alan M.; Kulbicki, Michel; Vigliola, Laurent.
Although marine reserves represent one of the most effective management responses to human impacts, their capacity to sustain the same diversity of species, functional roles and biomass of reef fishes as wilderness areas remains questionable, in particular in regions with deep and long-lasting human footprints. Here we show that fish functional diversity and biomass of top predators are significantly higher on coral reefs located at more than 20 h travel time from the main market compared with even the oldest (38 years old), largest (17,500 ha) and most restrictive (no entry) marine reserve in New Caledonia (South-Western Pacific). We further demonstrate that wilderness areas support unique ecological values with no equivalency as one gets closer to...
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Ano: 2016 URL: https://archimer.ifremer.fr/doc/00346/45742/45379.pdf
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Rare Species Support Vulnerable Functions in High-Diversity Ecosystems ArchiMer
Mouillot, David; Bellwood, David R.; Baraloto, Christopher; Chave, Jerome; Galzin, Rene; Harmelin-vivien, Mireille; Kulbicki, Michel; Lavergne, Sebastien; Lavorel, Sandra; Mouquet, Nicolas; Paine, C. E. Timothy; Renaud, Julien; Thuiller, Wilfried.
Around the world, the human-induced collapses of populations and species have triggered a sixth mass extinction crisis, with rare species often being the first to disappear. Although the role of species diversity in the maintenance of ecosystem processes has been widely investigated, the role of rare species remains controversial. A critical issue is whether common species insure against the loss of functions supported by rare species. This issue is even more critical in species-rich ecosystems where high functional redundancy among species is likely and where it is thus often assumed that ecosystem functioning is buffered against species loss. Here, using extensive datasets of species occurrences and functional traits from three highly diverse ecosystems...
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Ano: 2013 URL: https://archimer.ifremer.fr/doc/00144/25506/60251.pdf
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Let more big fish sink: Fisheries prevent blue carbon sequestration—half in unprofitable areas ArchiMer
Mariani, Gaël; Cheung, William W. L.; Lyet, Arnaud; Sala, Enric; Mayorga, Juan; Velez, Laure; Gaines, Steven D.; Dejean, Tony; Troussellier, Marc; Mouillot, David.
Contrary to most terrestrial organisms, which release their carbon into the atmosphere after death, carcasses of large marine fish sink and sequester carbon in the deep ocean. Yet, fisheries have extracted a massive amount of this “blue carbon,” contributing to additional atmospheric CO2 emissions. Here, we used historical catches and fuel consumption to show that ocean fisheries have released a minimum of 0.73 billion metric tons of CO2 (GtCO2) in the atmosphere since 1950. Globally, 43.5% of the blue carbon extracted by fisheries in the high seas comes from areas that would be economically unprofitable without subsidies. Limiting blue carbon extraction by fisheries, particularly on unprofitable areas, would reduce CO2 emissions by burning less fuel and...
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Ano: 2020 URL: https://archimer.ifremer.fr/doc/00658/77008/78264.pdf
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Reply to: "Global conservation of phylogenetic diversity captures more than just functional diversity" ArchiMer
Mazel, Florent; Pennell, Matthew W.; Cadotte, Marc W.; Diaz, Sandra; Dalla Riva, Giulio Valentino; Grenyer, Richard; Leprieur, Fabien; Mooers, Arne O.; Mouillot, David; Tucker, Caroline M.; Pearse, William D..
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Ano: 2019 URL: https://archimer.ifremer.fr/doc/00626/73772/75175.pdf
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Sustaining Rare Marine Microorganisms: Macroorganisms As Repositories and Dispersal Agents of Microbial Diversity ArchiMer
Troussellier, Marc; Escalas, Arthur; Bouvier, Thierry; Mouillot, David.
Recent analyses revealed that most of the biodiversity observed in marine microbial communities is represented by organisms with low abundance but, nonetheless essential for ecosystem dynamics and processes across both temporal and spatial scales. Surprisingly, few studies have considered the effect of macroorganism-microbe interactions on the ecology and distribution dynamics of rare microbial taxa. In this review, we synthesize several lines of evidence that these relationships cannot be neglected any longer. First, we provide empirical support that the microbiota of macroorganisms represents a significant part of marine bacterial biodiversity and that host-microbe interactions benefit to certain microbial populations which are part of the rare biosphere...
Tipo: Text Palavras-chave: Microbial communities; Microbial biodiversity; Rare biosphere; Microbiota; Macroorganism-microbe interactions; Dispersal; Metacommunity; Gut microbiota.
Ano: 2017 URL: http://archimer.ifremer.fr/doc/00390/50123/50721.pdf
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Responses of coral reef fishes to past climate changes are related to life-history traits ArchiMer
Ottimofiore, Eduardo; Albouy, Camille; Leprieur, Fabien; Descombes, Patrice; Kulbicki, Michel; Mouillot, David; Parravicini, Valeriano; Pellissier, Loic.
Coral reefs and their associated fauna are largely impacted by ongoing climate change. Unravelling species responses to past climatic variations might provide clues on the consequence of ongoing changes. Here, we tested the relationship between changes in sea surface temperature and sea levels during the Quaternary and present-day distributions of coral reef fish species. We investigated whether species-specific responses are associated with life-history traits. We collected a database of coral reef fish distribution together with life-history traits for the Indo-Pacific Ocean. We ran species distribution models (SDMs) on 3,725 tropical reef fish species using contemporary environmental factors together with a variable describing isolation from stable...
Tipo: Text Palavras-chave: Climate change; Dispersal; Indo-Pacific Ocean; Species distribution models.
Ano: 2017 URL: https://archimer.ifremer.fr/doc/00373/48403/48607.pdf
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Herbivorous fishes and the potential of Caribbean marine reserves to preserve coral reef ecosystems ArchiMer
Kopp, Dorothee; Bouchon-navaro, Yolande; Louis, Max; Mouillot, David; Bouchon, Claude.
1. The development of macroalgae to the detriment of corals is now one of the major threats to coral reefs. Herbivorous fishes are partly responsible for algal regulation on coral reefs and their overexploitation favours the shift from scleractinian coral-dominated systems towards macroalgae-dominated systems. 2. Marine protected areas (MPAs) that have been established worldwide may benefit coral reefs through the maintenance of high densities of herbivorous fishes which regulate algal growth. 3. The paper assesses whether small MPAs in the Caribbean are able to enhance herbivorous fish stock and by controlling macroalgae help to maintain reef ecosystems. A visual census using band-transects was undertaken around Guadeloupe island where marine reserves...
Tipo: Text Palavras-chave: Marine protected areas; Canonical analysis of principal coordinates; Sex change; Coral reefs; Phase shifts; Caribbean.
Ano: 2010 URL: http://archimer.ifremer.fr/doc/00011/12214/9551.pdf
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Mammalian phylogenetic diversity-area relationships at a continental scale ArchiMer
Mazel, Florent; Renaud, Julien; Guilhaumon, Francois; Mouillot, David; Gravel, Dominique; Thuiller, Wilfried.
In analogy to the species-area relationship (SAR), one of the few laws in ecology, the phylogenetic diversity-area relationship (PDAR) describes the tendency of phylogenetic diversity (PD) to increase with area. Although investigating PDAR has the potential to unravel the underlying processes shaping assemblages across spatial scales and to predict PD loss through habitat reduction, it has been little investigated so far. Focusing on PD has noticeable advantages compared to species richness (SR), since PD also gives insights on processes such as speciation/extinction, assembly rules and ecosystem functioning. Here we investigate the universality and pervasiveness of the PDAR at continental scale using terrestrial mammals as study case. We define the...
Tipo: Text Palavras-chave: Conservation biogeography; Habitat loss; Null models; Phylogenetic diversity; Species-area relationship; Strict nested design.
Ano: 2015 URL: https://archimer.ifremer.fr/doc/00610/72248/71049.pdf
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Geographic isolation and larval dispersal shape seascape genetic patterns differently according to spatial scale ArchiMer
Dalongeville, Alicia; Andrello, Marco; Mouillot, David; Lobreaux, Stephane; Fortin, Marie-josee; Lasram, Frida; Belmaker, Jonathan; Rocklin, Delphine; Manel, Stephanie.
Genetic variation, as a basis of evolutionary change, allows species to adapt and persist in different climates and environments. Yet, a comprehensive assessment of the drivers of genetic variation at different spatial scales is still missing in marine ecosystems. Here, we investigated the influence of environment, geographic isolation, and larval dispersal on the variation in allele frequencies, using an extensive spatial sampling (47 locations) of the striped red mullet (Mullus surmuletus) in the Mediterranean Sea. Univariate multiple regressions were used to test the influence of environment (salinity and temperature), geographic isolation, and larval dispersal on single nucleotide polymorphism (SNP) allele frequencies. We used Moran's eigenvector maps...
Tipo: Text Palavras-chave: Connectivity; Ecological genetics; Marine fish; Mediterranean Sea; Mullus surmuletus; Seascape genetics; Single nucleotide polymorphism.
Ano: 2018 URL: https://archimer.ifremer.fr/doc/00454/56556/75079.pdf
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Combining six genome scan methods to detect candidate genes to salinity in the Mediterranean striped red mullet (Mullus surmuletus) ArchiMer
Dalongeville, Alicia; Benestan, Laura; Mouillot, David; Lobreaux, Stephane; Manel, Stephanie.
Background: Adaptive genomics may help predicting how a species will respond to future environmental changes. Genomic signatures of local adaptation in marine organisms are often driven by environmental selective agents impacting the physiology of organisms. With one of the highest salinity level, the Mediterranean Sea provides an excellent model to investigate adaptive genomic divergence underlying salinity adaptation. In the present study, we combined six genome scan methods to detect potential genomic signal of selection in the striped red mullet (Mullus surmuletus) populations distributed across a wide salinity gradient. We then blasted these outlier sequences on published fish genomic resources in order to identify relevant potential candidate genes...
Tipo: Text Palavras-chave: Adaptive genomics; Genome scan; Candidate genes; Mediterranean Sea; Mullus surmuletus; Salinity.
Ano: 2018 URL: https://archimer.ifremer.fr/doc/00438/54992/75081.pdf
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The collapse and recovery potential of carbon sequestration by baleen whales in the Southern Ocean ArchiMer
Durfort, Anaelle; Mariani, Gael; Troussellier, Marc; Tulloch, Vivitskaia; Mouillot, David.
Limiting climate warming below 2°C requires both reducing anthropic greenhouse gas emissions and sequestering more atmospheric carbon. Natural Climate Solutions (NCS) rely on the ability of ecosystems to capture and store carbon. Despite the important role of marine megafauna on the ocean carbon cycle, its potential as a NCS has not yet been explored. Here, we quantify the amount of carbon potentially sequestered by five baleen whale species across the Southern Hemisphere between 1890 and 2100 through both the sinking of carcasses after natural death and the fertilisation of phytoplankton by nutrients in faeces. At their pre-exploitation abundances, the five whales could sequester 10.6 106 tonnes of carbon per year (tC.yr-1) but this natural carbon sink...
Tipo: Text Palavras-chave: Natural Climate Solutions; Climate change; Population dynamics; Modelling; Krill.
Ano: 2021 URL: https://archimer.ifremer.fr/doc/00682/79434/82038.pdf
Registros recuperados: 66
Primeira ... 1234 ... Última
 

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