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Adaptive Harvesting in a Multiple-Species Coral-Reef Food Web Ecology and Society
Kramer, Daniel B; Michigan State University; dbk@msu.edu.
The utility of traditional bio-economic harvest models suffers from their dependence on two commonly used approaches. First, optimization is often assumed for harvester behavior despite system complexity and the often neglected costs associated with information gathering and deliberation. Second, ecosystem interactions are infrequently modeled despite a growing awareness that these interactions are important. This paper develops a simulation model to examine the consequences of harvesting at two trophic levels in a coral-reef food web. The model assumes adaptive rather than optimizing behavior among fishermen. The consequences of changing economic, biological, and social parameters are examined using resilience as an evaluative framework. Three general...
Tipo: Peer-Reviewed Reports Palavras-chave: Fisheries; Resource economics; Coral reefs; Resilience; Adaptive behavior; Food web; Simulation.
Ano: 2008
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Особенности формирования хроматофорного комплекса камбалы калкан Psetta maxima var. maeotica в онтогенезе в зависимости от пищевой цепи. IBSS Repository
Ханайченко, А. Н.; Битюкова, Ю. Е..
Сравнение влияния пищевой цепи на развитие пигментации (хроматофорного комплекса) у камбалы калкан Psetta maxima var. maeotica проводили от начала экзогенного питания до начала метаморфоза (3 - 18 сут) и от начала до последней стадии метаморфоза (18 – 60 сут). Группы калкана (в двух повторностях, из однородных партий икры) содержали в разных пищевых цепях: либо в типично морской, состоящей из культивируемых каланоидных копепод, Acartia tonsa (группа MZ), либо в искусственной, состоящей из солоноватоводных коловраток Brachionus plicatilis и метанауплиев Artemia franciscana (группа BZ). Для аппроксимации жирнокислотного состава применяли единую схему насыщения, в результате которой у всех кормовых организмов были близкие значения содержания и соотношения...
Tipo: Journal Contribution Palavras-chave: Калкан; Пищевая цепь; Пигментация; Меланофор; Липофор; Гуанофор; Дифференциация; Black Sea turbot; Food web; Pigmentation; Melanophore; Lipophore; Guanophore; Differentiation; Харчовий ланцюг; Пігментація; Меланофор; Ліпофор; Гуанофор; Діфференціація.
Ano: 2007 URL: http://repository.ibss.org.ua/dspace/handle/99011/849
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Effet d’une espèce ingénieur sur la diversité et le fonctionnement des communautés benthiques : l’habitat récifal à Sabellaria alveolata ArchiMer
Jones, Auriane.
Coastal zones worldwide are home to a large diversity of ecosystem engineers that perform key functions such as the recycling of organic matter and nutrients. The habitats resulting from the biological activity of these species are exposed to numerous disturbances such as over harvesting and trampling or via coastal modification. In this context, it is becoming key to understand the functioning of these engineered habitats and how they are affected by increasing disturbances. During my PhD, I used the reef habitat built by the gregarious tubiculous polychaete Sabellaria alveolata as a study case. First, the environmental and biotic changes associated with the establishment of a S. alveolata reef and its increasing disturbance were assessed, focusing on...
Tipo: Text Palavras-chave: Ingénieur de l’écosystème; Habitat récifal; Macrofaune benthique; Diversité fonctionnelle et isotopique; Production primaire benthique; Réseau trophique; Flux biogéochimiques; Traits biologiques; Ecosystem engineer; Reef habitat; Benthic macrofauna; Functional and isotopic diversity; Facilitation; Benthic primary production; Food web; Biogeochemical fluxes; Isoscape; Biological traits.
Ano: 2017 URL: https://archimer.ifremer.fr/doc/00498/60960/64363.pdf
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Short-scale temporal variability of physical, biological and biogeochemical processes in the NW Mediterranean Sea: an introduction ArchiMer
Andersen, V.; Goutx, M.; Prieur, L.; Dolan, J. R..
In the framework of the PROOF-PECHE project (http://www.obs-vlfr.fr/proof/vt/op/ec/peche/pec.htm) a multi-disciplinary team performed experiments and collected samples during the DYNAPROC2 cruise aboard the RV Thalassa from September to October in 2004. The cruise provided data on the functioning of the pelagic food web by sampling over a month long period in the NW Mediterranean Sea at a fixed station subject to weak horizontal advection currents during a period of hydrological stability. This paper describes the background of the cruise and provides an overview of the results derived from the campaign which constitute the special section. The major objective of the cruise was to assess the relative importance and variability of the pathways of carbon in...
Tipo: Text Palavras-chave: Spring bloom; Zooplankton community; Vertical distribution; Surface layer; Wind events; Bacterial communities; Food web; Transition; Oligotrophy; Abundance.
Ano: 2009 URL: https://archimer.ifremer.fr/doc/00092/20315/17954.pdf
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The Channel habitat atlas for marine resource management (CHARM): an aid for planning and decision-making in an area under strong anthropogenic pressure ArchiMer
Martin, C. S.; Carpentier, Andre; Vaz, Sandrine; Coppin, Franck; Curet, L.; Dauvin, J. -c.; Delavenne, Juliette; Dewarumez, J. -m.; Dupuis, L.; Engelhard, G.; Ernande, Bruno; Foveau, A.; Garcia, C.; Gardel, Laure; Harrop, S.; Just, R.; Koubbi, P.; Lauria, Valentina; Meaden, G. J.; Morin, Jocelyne; Ota, Y.; Rostiaux, Emilie; Smith, R.; Spilmont, N.; Verin, Yves; Villanueva, Ching-maria; Warembourg, Caroline.
The eastern English Channel, the narrow channel of water separating northern France and southeast England is an area of intense human use of the array of resources concentrated into its relative small area. The vulnerability of living resources and their habitats brought together French and British maritime experts within a common project (called CHARM): to create an atlas of marine resource habitats in the eastern English Channel so as to provide planners and decision-makers with the necessary information to help managing the use of its living and non-living resources. This multidisciplinary and richly illustrated atlas provides abundant information on the legal framework and physical environment; benthic invertebrates, fish and their habitats; fishing...
Tipo: Text Palavras-chave: Eastern English Channel; Dover Strait; Benthos; Fish; Habitat; Ecosystem; Marine spatial planning; Fisheries; Legislation; Trophic network; Food web; GIS; Geographic Information System.
Ano: 2009 URL: http://archimer.ifremer.fr/doc/00000/11169/7523.pdf
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Stable isotope analysis position of intertidal of food source and trophic nematodes and copepods ArchiMer
Rzeznik Orignac, J; Boucher, G; Fichet, Denis; Richard, P.
Four dominant nematode species and various copepods from an intertidal mudflat in Marennes-Oleron Bay were analyzed for delta C-13 and delta N-15 ratios together with their potential food source, the microphytobenthos. It was shown that microphytobenthic C is passed to nematodes either by grazing or predation on herbivorous meiofauna by other nematodes. Diatoms of different sizes exhibited different C-13 content, which can be reflected in herbivorous meiofauna, such as the nematodes Daptonema oxycerca and Metachromadora remanei and the bulk of copepods, indicating they can select different sizes of diatoms. Results confirm the need to analyze meiofauna feeding habits at the species or genera level since the delta N-15 and delta C-13 signatures differed...
Tipo: Text Palavras-chave: Stable isotopes; Marennes Oleron; Mudflat; Food web; Benthic diatoms; Microphytobenthos; Meiofauna; Copepods; Nematodes.
Ano: 2008 URL: http://archimer.ifremer.fr/doc/2008/publication-4292.pdf
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Trophic relationships in a deep Mediterranean cold-water coral bank (Santa Maria di Leuca, Ionian Sea) ArchiMer
Carlier, A.; Le Guilloux, E.; Olu, Karine; Sarrazin, Jozee; Mastrototaro, F.; Taviani, M.; Clavier, J..
Cold-water corals (CWC) are frequently reported from deep sites with locally accelerated currents that enhance seabed food particle supply. Moreover, zooplankton likely account for ecologically important prey items, but their contribution to CWC diet remains unquantified. We investigated the benthic food web structure of the recently discovered Santa Maria di Leuca (SML) CWC province (300 to 1100 m depth) located in the oligotrophic northern Ionian Sea. We analyzed stable isotopes (delta C-13 and delta N-15) of the main consumers (including ubiquitous CWC species) exhibiting different feeding strategies, zooplankton, suspended particulate organic matter (POM) and sedimented organic matter (SOM). Zooplankton and POM were collected 3 m above the coral...
Tipo: Text Palavras-chave: Particulate organic matter; Zooplankton; Stable isotopes; Food web; Mediterranean Sea; Benthic community; Cold water corals.
Ano: 2009 URL: http://archimer.ifremer.fr/doc/2009/publication-7450.pdf
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Understanding patterns and processes in models of trophic cascades ArchiMer
Heath, Michael R.; Speirs, Douglas C.; Steele, John H..
Climate fluctuations and human exploitation are causing global changes in nutrient enrichment of terrestrial and aquatic ecosystems and declining abundances of apex predators. The resulting trophic cascades have had profound effects on food webs, leading to significant economic and societal consequences. However, the strength of cascades-that is the extent to which a disturbance is diminished as it propagates through a food web-varies widely between ecosystems, and there is no formal theory as to why this should be so. Some food chain models reproduce cascade effects seen in nature, but to what extent is this dependent on their formulation? We show that inclusion of processes represented mathematically as density-dependent regulation of either consumer...
Tipo: Text Palavras-chave: Bottom-up; Density dependence; Food chain; Food web; Harvesting; Model; Predator-prey; Simulation; Top-down.
Ano: 2014 URL: https://archimer.ifremer.fr/doc/00171/28249/26505.pdf
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Influences of geothermal sulfur bacteria on a tropical coastal food web ArchiMer
Pascal, Pierre-yves; Dubois, Stanislas; Goffette, Anais; Lepoint, Gilles.
The activity of the geothermal plant at Bouillante in Guadeloupe (French West Indies) releases thioautotrophic bacteria into the coastal environment. Fish counts reveal that fish abundance increases with higher availability of this bacterial resource. In order to evaluate the trophic role of these bacteria, isotopic compositions (C, N, S) of potential consumers were evaluated on transects at increasing distance from the source of bacteria. The 3 mobile fish species examined (Abudefduf saxatilis, Acanthurus bahianus, and Stegastes partitus) ingested and assimilated chemosynthetic bacteria. Similarly, the isotopic composition of the mobile sea urchin Diadema antillarum was different close to the discharge channel, suggesting a diet mainly composed of sulfur...
Tipo: Text Palavras-chave: Shallow vent; Food web; Sulfur bacteria; Stable isotope.
Ano: 2017 URL: http://archimer.ifremer.fr/doc/00404/51511/52256.pdf
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Couplage de modèles trophiques et effets combinés de la pêche et du climat ArchiMer
Travers, Morgane.
Overfishing and climate change are now recognized to have important effects on marine ecosystem functioning but uncertainties remains about their combined effects. Using a modelling approach this thesis aims at assessing how the top-down effects of fishing and the bottom-up effects of climate combine themselves within the food web. A preliminary review highlighted the lack of end-to-end model applicable as it stands to our study case - the southern Benguela - and suitable to study the combined effects of fishing and climate. Coupling the plankton model ROMS-N2P2Z2D2 and the fish model OSMOSE appeared as an innovative method allowing to develop an appropriate tool meeting our objectives. The importance of two-way coupling via the predation process is first...
Tipo: Text Palavras-chave: Modèle end-to-end; Couplage de modèle; Réseau trophique; Sud- Benguela; Effets combinés; Changement climatique; Surexploitation; End-to-end model; Model coupling; Food web; Southern Benguela; Combined effects; Climate change; Overfishing.
Ano: 2009 URL: http://archimer.ifremer.fr/doc/00003/11445/7993.pdf
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Typologie biosédimentaire de la baie de Saint-Brieuc (Manche ouest), et estimation de la biomasse des catégories trophiques macrozoobenthiques. ArchiMer
Gros, Philippe; Hamon, Dominique.
The aim of this report is to provide biomass estimates (AFDW, g.m-2 ) of the four main components of the benthic food web in the southern part of the Bay of St-Brieuc: suspension-feeders, deposit-feeders, herbivores and carnivores. Patterns in the environmental data (i.e., sedimentary characters) are first analysed, and then related to the spatial distribution of communities ; both approaches use classical ordination techniques (PCA, correspondence analysis). A second typology, based on a review of published litterature concerning coastal macrozoobenthos feeding, ascribes each taxonomic unit to a trophic group. Finally, quantitative results are thus given per biota ; suspension-feeders appear to dominate (in terms of biomass) most of fine-sand habitats of...
Tipo: Text Palavras-chave: Zoobenthos; Réseau trophique; Analyses multivariables; Manche ouest; Zoobenthos; Food web; Multivariate analysis; Western Channel.
Ano: 1988 URL: http://archimer.ifremer.fr/doc/00107/21794/19371.pdf
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Caractérisation et modélisation des processus de bioaccumulation des PCB chez le merlu (Merluccius merluccius) du golfe du Lion ArchiMer
Bodiguel, Xavier.
Understanding bioaccumulation mechanisms of persistent organic pollutants (POPs) is a major issue for environmental risk assessment. In this work, polychlorinated biphenyls (PCBs), a model contaminant family, has been studied in the European hake (Merluccius merluccius), a high trophic level species from the Gulf of Lions. High concentrations of PCBs were measured in hake from this area compared to those encountered in the population of the Bay of Biscay. PCB biomagnification was highlighted along its food web from marine phytoplankton, suggesting a strong influence of diet on contamination levels. The role of other biological processes was also apprehended in order to understand the high variability of observed levels. Thus, growth, sex, and also the...
Tipo: Text Palavras-chave: DEB theory; Bioenergetic model; Gulf of Lions; Biomagnification; Food web; Hake; Bioaccumulation; Polychlorinated biphenyls; Organic contaminants; Théorie DEB; Modèle bioenergétique; Golfe du Lion; Bioamplification; Réseau trophique; Merlu; Bioaccumulation; Polychlorobiphényles; Contaminants organiques.
Ano: 2008 URL: http://archimer.ifremer.fr/doc/2008/these-6490.pdf
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Seagrass organic matter transfer in Posidonia oceanica macrophytodetritus accumulations ArchiMer
Remy, François; Mascart, Thibaut; De Troch, Marleen; Michel, Loic; Lepoint, Gilles.
Seagrass ecosystems are net autotrophic systems which contribute to organic carbon burial in marine sediment. Dead seagrass leaves are often exported outside the seagrass beds and may form accumulations (exported macrophytodetritus accumulations, hereafter EMAs) from littoral zones to deepest canyons. Understanding how seagrass organic matter is channeled in its associated trophic web is necessary to assess the role of the seagrass ecosystem as blue carbon service providers. We used gut content and stable isotope analyses to delineate the Posidonia oceanica EMA food web structure and to determine the importance of detrital material in the diets of macrofauna. Evidence from gut contents and stable isotopes showed that this food web is fuelled mainly by two...
Tipo: Text Palavras-chave: Stable isotopes; Detrital pathway; Mixing models; Trophic level; Invertebrates; Mediterranean Sea; Food web.
Ano: 2018 URL: https://archimer.ifremer.fr/doc/00448/55969/57464.pdf
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Contamination of some aquatic species with the organochlorine pesticide chlordecone in Martinique ArchiMer
Coat, Sophie; Bocquene, Gilles; Godard, Eric.
Martinique is a French overseas department whose economy relies heavily on agriculture. Organochlorine pesticides, mainly chlordecone, were used for banana cultivation to eradicate banana weevil over a period of 40 years. Chlordecone is chemically stable,and has a strong affinity for fatty tissues. It is therefore able to bioaccumulate in animals and thereby represent a threat to ecosystems and man. Soils from banana plantations in Martinique are heavily contaminated with chlordecone. Possible transfer of these molecules from agricultural watersheds to the aquatic environment and the organisms that live in it is feared. The hypothesis that ecosystems of Martinique might be highly contaminated with this organochlorine pesticide was investigated. Chlordecone...
Tipo: Text Palavras-chave: W Atlantic; Caribbean Islands; Food web; Aquatic organisms; Chlordecone; Contamination; Pesticides.
Ano: 2006 URL: http://archimer.ifremer.fr/doc/2006/publication-1662.pdf
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Network analysis and inter-ecosystem comparison of two intertidal mudflat food webs (Brouage Mudflat and Aiguillon Cove, SW France) ArchiMer
Leguerrier, D; Degre, Delphine; Niquil, N.
Network analysis was used to analyse steady-state models of the food webs of two intertidat mudflat ecosystems: Aiguillon Cove and Brouage Mudflat, on the South-Western Atlantic Coast of France. The aim was to highlight emergent properties of food-web functioning in these two ecosystems and to compare these properties with other coastal ecosystems. Both ecosystems imported detritus in parallel to a high benthic primary production. They were characterised by a high diversity of resources. Both also exported living material, leading to a high quality production, quantified as export of Exergy. This export was mainly composed of cultivated bivalves during the cold season for Brouage Mudflat, and of the migration of grazing fish in Aiguillon Cove during the...
Tipo: Text Palavras-chave: Atlantic coast; Intertidal mudflat; Network analysis; Inverse analysis; Ecosystem comparison; Food web.
Ano: 2007 URL: http://archimer.ifremer.fr/doc/2007/publication-3696.pdf
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Diverse molecular signatures for ribosomally 'active' Perkinsea in marine sediments ArchiMer
Chambouvet, Aurelie; Berney, Cedric; Romac, Sarah; Audic, Stephane; Maguire, Finlay; De Vargas, Colomban; Richards, Thomas A..
Background: Perkinsea are a parasitic lineage within the eukaryotic superphylum Alveolata. Recent studies making use of environmental small sub-unit ribosomal RNA gene (SSU rDNA) sequencing methodologies have detected a significant diversity and abundance of Perkinsea-like phylotypes in freshwater environments. In contrast only a few Perkinsea environmental sequences have been retrieved from marine samples and only two groups of Perkinsea have been cultured and morphologically described and these are parasites of marine molluscs or marine protists. These two marine groups form separate and distantly related phylogenetic clusters, composed of closely related lineages on SSU rDNA trees. Here, we test the hypothesis that Perkinsea are a hitherto under-sampled...
Tipo: Text Palavras-chave: 454 pyrosequencing; Perkinsus; Parvilucifera; Food web; Protist; Parasite.
Ano: 2014 URL: https://archimer.ifremer.fr/doc/00374/48496/48830.pdf
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Investigating trophic-level variability in Celtic Sea fish predators ArchiMer
Chassot, E; Rouyer, Tristan; Trenkel, Verena; Gascuel, D.
The trophic level mean and variance, and the degree of omnivory for five Celtic Sea fish predators were estimated using a database of stomach content records characterized by a high level of taxonomic resolution. The predators occupied a high position in the food web, i.e. 4.75 for Atlantic cod Gadus morhua, 444 for haddock Melanogrammus aeglefinus, 4.88 for European hake Merluccius merluccius, 5.00 for megrim Lepidorhombus whiffiagonis and 5.27 for whiting Merlangius merlangus. The level of taxonomic resolution of the prey did not greatly affect mean T-L predator values; an effect on variance was evident, low resolution masking intra-population variability in T-L. Generalized additive models (GAM) were used to explain the variability of predator T-L...
Tipo: Text Palavras-chave: Trophic level; Predation; Omnivory; Indicator; GAM; Food web.
Ano: 2008 URL: http://archimer.ifremer.fr/doc/2008/publication-4699.pdf
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Trophic structure in the Gulf of Lions marine ecosystem (north-western Mediterranean Sea) and fishing impacts ArchiMer
Banaru, Daniela; Mellon, Capucine; Roos, David; Bigot, Jean-louis; Souplet, Arnauld; Jadaud, Angelique; Beaubrun, P.; Fromentin, Jean-marc.
The Gulf of Lions ecosystemwas described using the Ecopath mass-balancemodel to characterise its structure and functioning and to examine the effects of themultispecific fisheries operating in this area. The model is composed of 40 compartments, including 1 group of seabirds, 2 groups of etaceans, 18 groups of fish, 12 groups of invertebrates, 5 groups of primary producers, detritus and discards. Input datawere based on several recurrent scientific surveys, two alternative datasets for fishing data, stock assessment outputs, stomach content analyses and published information. Results showed that the functional groups were organised into five trophic levels with the highest one represented by dolphins, anglerfish, Atlantic bluefin tuna, European hake and...
Tipo: Text Palavras-chave: Gulf of Lions; Ecopath with Ecosim; Food web; Fishing impacts.
Ano: 2013 URL: http://archimer.ifremer.fr/doc/00116/22758/20614.pdf
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There's no harm in having too much: A comprehensive toolbox of methods in trophic ecology ArchiMer
Majdi, Nabil; Hette-tronquart, Nicolas; Auclair, Etienne; Bec, Alexandre; Chouvelon, Tiphaine; Cognie, Bruno; Danger, Michael; Decottignies, Priscilla; Dessier, Aurélie; Desvilettes, Christian; Dubois, Stanislas; Dupuy, Christine; Fritsch, Clémentine; Gaucherel, Cédric; Hedde, Mickaël; Jabot, Franck; Lefebvre, Sebastien; Marzloff, Martin; Pey, Benjamin; Peyrard, Nathalie; Powolny, Thibaut; Sabbadin, Régis; Thébault, Elisa; Perga, Marie-elodie.
Trophic ecology is the study of feeding interactions and food acquisition by organisms. It includes the causes and consequences of those behaviours at all levels of biological organisation. As a field of research, it crosses many disciplinary boundaries and provides knowledge that is pertinent to many other areas of ecology. Here we list and categorise the methods available to trophic ecologists whose toolbox has broadened considerably in recent years. They encompass empirical and numerical approaches with focus ranging from molecules to ecosystems. We further examine the relationship of each method to features such as the scale of observation (from microbes to largest organisms) and organisational level (from individuals to ecosystems) as well as the...
Tipo: Text Palavras-chave: Food web; Feeding interactions; Flux of energy; Computer simulations; Trophic models.
Ano: 2018 URL: https://archimer.ifremer.fr/doc/00487/59834/65986.pdf
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Biomass changes and trophic amplification of plankton in a warmer ocean ArchiMer
Chust, Guillem; Allen, J. Icarus; Bopp, Laurent; Schrum, Corinna; Holt, Jason; Tsiaras, Kostas; Zavatarelli, Marco; Chifflet, Marina; Cannaby, Heather; Dadou, Isabelle; Daewel, Ute; Wakelin, Sarah L.; Machu, Eric; Pushpadas, Dhanya; Butenschon, Momme; Artioli, Yuri; Petihakis, Georges; Smith, Chris; Garcon, Veronique; Goubanova, Katerina; Le Vu, Briac; Fach, Bettina A.; Salihoglu, Baris; Clementi, Emanuela; Irigoien, Xabier.
Ocean warming can modify the ecophysiology and distribution of marine organisms, and relationships between species, with nonlinear interactions between ecosystem components potentially resulting in trophic amplification. Trophic amplification (or attenuation) describe the propagation of a hydroclimatic signal up the food web, causing magnification (or depression) of biomass values along one or more trophic pathways. We have employed 3-D coupled physical-biogeochemical models to explore ecosystem responses to climate change with a focus on trophic amplification. The response of phytoplankton and zooplankton to global climate-change projections, carried out with the IPSL Earth System Model by the end of the century, is analysed at global and regional basis,...
Tipo: Text Palavras-chave: Ecosystem model; Food web; Plankton; Primary production; Sea warming; Trophic amplification.
Ano: 2014 URL: http://archimer.ifremer.fr/doc/00188/29966/28481.pdf
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