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Functional patterns of tree communities in natural Araucaria forests and old monoculture conifer plantations Acta Botanica
Malysz,Marcelo; Müller,Sandra Cristina; Milesi,Silvia Vendruscolo; Santos,Anita Stival dos; Overbeck,Gerhard Ernst.
ABSTRACT A functional perspective of tree communities is helpful for understanding forest dynamics, especially vegetation recovery after other land uses. Knowledge about ecological filters and survival strategies of trees are also important for the restoration of degraded areas. This study aimed to evaluate the functional composition and structure of adult and regenerative components of natural Araucaria forests, Araucaria plantations and plantations of exotic Pinus in subtropical southern Brazil. Differences in functional diversity and functional richness, and in community weighted mean trait values, including leaf traits and reproductive traits, were analyzed. RLQ analysis was used to assess the association between community structure, plant traits and...
Tipo: Info:eu-repo/semantics/article Palavras-chave: Araucaria angustifolia; Atlantic Forest; Forest dynamics; Functional diversity; Functional patterns; Pinus sp.; Succession; Tree plantations.
Ano: 2019 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S0102-33062019000400777
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Bacterial communities in mining soils and surrounding areas under regeneration process in a former ore mine BJM
Fernandes,Camila Cesário; Kishi,Luciano Takeshi; Lopes,Erica Mendes; Omori,Wellington Pine; Souza,Jackson Antonio Marcondes de; Alves,Lucia Maria Carareto; Lemos,Eliana Gertrudes de Macedo.
Abstract Human activities on the Earth's surface change the landscape of natural ecosystems. Mining practices are one of the most severe human activities, drastically altering the chemical, physical and biological properties of the soil environment. Bacterial communities in soil play an important role in the maintenance of ecological relationships. This work shows bacterial diversity, metabolic repertoire and physiological behavior in five ecosystems samples with different levels of impact. These ecosystems belong to a historical area in Iron Quadrangle, Minas Gerais, Brazil, which suffered mining activities until its total depletion without recovery since today. The results revealed Proteobacteria as the most predominant phylum followed by Acidobacteria,...
Tipo: Info:eu-repo/semantics/article Palavras-chave: Iron mine; Bacterial diversity; Functional diversity; Brazilian soils.
Ano: 2018 URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1517-83822018000300489
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Evaluation of soil-microbial communities by their CLPP: Standardization of a laboratory technique to replace commercial available microplates Ecología austral
Di Salvo,Luciana P.; García De Salamone,Inés E..
Variation of soil-microbial communities are good bioindicators of human impacts in soils, such as different soils management or contamination. Considering that traditional methods of isolation and taxonomic analysis do not consider the functionality of the microbial community, Community-Level Physiological Profiles (CLPP) emerged as a complementary methodology to study microbial communities. Several studies have shown that Biolog® EcoPlates® are very useful for determining physiological differences between communities from different samples. However, commercial microplates have some disadvantages which led us to the idea of replacing them by microplates prepared in the laboratory (Laboratory's). Here, we compared both types of microplates using soil...
Tipo: Info:eu-repo/semantics/other Palavras-chave: Carbon-source utilization; Community-level physiological profiles; Functional diversity; Metabolic profiles.
Ano: 2012 URL: http://www.scielo.org.ar/scielo.php?script=sci_arttext&pid=S1667-782X2012000200006
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Quantifying Biodiversity for Building Resilience for Food Security in Urban Landscapes: Getting Down to Business Ecology and Society
Polasky, Steven; Department of Applied Economics, University of Minnesota ; polasky@umn.edu.
A steady stream of ecosystem services is essential for human welfare and survival, and it has been convincingly shown that these flows are being eroded. Compelling theoretical knowledge about essential connections between ecosystem service generation, biodiversity, and resilience in social-ecological systems already exists; however, we still, to a great extent, lack spatially explicit quantitative assessments for translating this theoretical knowledge into practice. We propose an approach for measuring the change in flow and resilience of a regulating ecosystem service on a landscape scale over time when the landscape is exposed to both land use change due to urban expansion, and change in a large-scale economic driver. Our results quantitatively show...
Tipo: Peer-Reviewed Reports Palavras-chave: Ecosystem services; Food security; Functional diversity; Pollination; Resilience; Response diversity; Urban ecology.
Ano: 2010
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Trait structure and redundancy determine sensitivity to disturbance in marine fish communities ArchiMer
Mclean, Matthew; Auber, Arnaud; Graham, Nicholas A J; Houk, Peter; Villéger, Sébastien; Violle, Cyrille; Thuiller, Wilfried; Wilson, Shaun K.; Mouillot, David.
‘Functional’ diversity is believed to influence ecosystem dynamics through links between organismal traits and ecosystem processes. Theory predicts that key traits and high trait redundancy – large species richness and abundance supporting the same traits – can buffer communities against environmental disturbances. While experiments and data from simple ecological systems lend support, large‐scale evidence from diverse, natural systems under major disturbance is lacking. Here, using long‐term data from both temperate (English Channel) and tropical (Seychelles Islands) fishes, we show that sensitivity to disturbance depends on communities’ initial trait structure and initial trait redundancy. In both ecosystems, we found that increasing dominance by...
Tipo: Text Palavras-chave: Climate change; Coral reefs; Diversity stability; Ecological traits; Ecosystem functioning; English Channel; Functional diversity.
Ano: 2019 URL: https://archimer.ifremer.fr/doc/00490/60184/63525.pdf
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Functional differences between fish communities on artificial and natural reefs: a case study along the French Catalan coast ArchiMer
Koeck, Barbara; Tessier, Anne; Brind'Amour, Anik; Pastor, Jeremy; Bijaoui, Benjamin; Dalias, Nicolas; Astruch, Patrick; Saragoni, Gilles; Lenfant, Philippe.
In the context of growing anthropogenic disturbances that deeply alter marine coastal ecosystems, various management tools are used to protect biodiversity, such as fishing gear limitations, fishing quotas, protected areas or the creation of artificial reefs (ARs). In contrast to the other management tools, ARs require a modification of natural habitats. We used underwater visual censuses to investigate the effect of habitat modification on the structure of fish communities by comparing a natural reef (NR) to ARs with different habitat complexity. Different fish assemblage descriptors were used to assess species- and functional- and community-level aspects of the assemblages. ARs were rapidly colonized by adult fishes and presented community compositions...
Tipo: Text Palavras-chave: Ecological niche; Fish community; Fisheries management; Functional diversity; Gulf of Lion; Habitat complexity; Mediterranean Sea; Underwater visual census.
Ano: 2014 URL: https://archimer.ifremer.fr/doc/00189/30029/28514.pdf
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Trait‐based approach to monitoring marine benthic data along 500 km of coastline ArchiMer
Boyé, Aurelien; Thiébaut, Éric; Grall, Jacques; Legendre, Pierre; Broudin, Caroline; Houbin, Céline; Le Garrec, Vincent; Maguer, Marion; Droual, Gabin; Gauthier, Olivier.
Aim β diversity and its linkages with ecosystem functioning remain poorly documented. This impedes our capacity to predict biodiversity changes and how they affect ecosystem functioning at scales relevant for conservation. Here, we address the functional implications of ongoing seafloor changes by characterizing at regional scale the taxonomic and functional α and β diversities of benthic habitats currently threatened by biotic homogenization. Location Western Europe. Methods Combining a trait‐based approach to benthic community monitoring data covering a 7‐year period and 500 km of coast, we explored the mechanisms governing community assembly in habitats associated with two types of foundation species, intertidal seagrass and subtidal maerl beds,...
Tipo: Text Palavras-chave: Beta diversity; Biotic homogenization; Broad-scale monitoring; Community assembly; Coralline algae; Ecosystem engineers; Functional diversity; Zostera marina.
Ano: 2019 URL: https://archimer.ifremer.fr/doc/00515/62688/67074.pdf
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Building functional groups of marine benthic macroinvertebrates on the basis of general community assembly mechanisms ArchiMer
Alexandridis, Nikolaos; Bacher, Cedric; Desroy, Nicolas; Jean, Fred.
The accurate reproduction of the spatial and temporal dynamics of marine benthic biodiversity requires the development of mechanistic models, based on the processes that shape macroinvertebrate communities. The modelled entities should, accordingly, be able to adequately represent the many functional roles that are performed by benthic organisms. With this goal in mind, we applied the emergent group hypothesis (EGH), which assumes functional equivalence within and functional divergence between groups of species. The first step of the grouping involved the selection of 14 biological traits that describe the role of benthic macroinvertebrates in 7 important community assembly mechanisms. A matrix of trait values for the 240 species that occurred in the Rance...
Tipo: Text Palavras-chave: Assembly mechanisms; Benthic communities; Biological traits; Emergent groups; Functional diversity; Functional redundancy.
Ano: 2017 URL: http://archimer.ifremer.fr/doc/00369/47975/48000.pdf
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Effets ingénieurs auto- et allogénique de l’espèce invasive Crepidula fornicata (Linnaeus, 1758) sur la diversité structurelle et fonctionnelle des habitats benthiques colonisés de la rade de Brest ArchiMer
Vallee, Vincent.
The non-native slipper limpet Crepidula fornicata (Linnaeus, 1758) has proliferated in the Bay of Brest during the 90s. This suspension-feeding gastropod has become a dominant species both in terms of density (> 2000 ind.m-2) and biomass (127 000 t fresh weight in 2000). C. fornicata is also an ecosystem engineer that modifies its habitat by the presence of its own shell (autogenic engineering) and by biodeposition of faeces and pseudo-faeces (allogenic engineering). Here, we tested the effects of C. fornicata on the colonized communities’ structural and functional diversity by distinguishing his auto- and allogenic engineering effects. One way these changes were studied along a gradient characterized by the total weight of slipper limpet (dead and...
Tipo: Text Palavras-chave: Crepidula fornicata; Espèce ingénieur; Diversité structurelle; Diversité fonctionnelle; Analyse des traits biologiques; Rade de Brest; Crepidula fornicata; Ecosystem engineer; Structural diversity; Functional diversity; Biological traits analysis; Bay of Brest.
Ano: 2016 URL: http://archimer.ifremer.fr/doc/00368/47920/47949.pdf
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An intimate link between antimicrobial peptide sequence diversity and binding to essential components of bacterial membranes ArchiMer
Schmitt, Paulina; Rosa, Rafael D.; Destoumieux-garzon, Delphine.
Antimicrobial peptides and proteins (AMPs) are widespread in the living kingdom. They are key effectors of defense reactions and mediators of competitions between organisms. They are often cationic and amphiphilic, which favors their interactions with the anionic membranes of microorganisms. Several AMP families do not directly alter membrane integrity but rather target conserved components of the bacterial membranes in a process that provides them with potent and specific antimicrobial activities. Thus, lipopolysaccharides (LPS), lipoteichoic acids (LTA) or the peptidoglycan precursor Lipid II are targeted by a broad series of AMPs. Studying the functional diversity of immune effectors tells us about the essential residues involved in AMP mechanism of...
Tipo: Text Palavras-chave: Functional diversity; Defensin; Anti-lipopolysaccharide factor; Mechanism of action; Resistance.
Ano: 2016 URL: http://archimer.ifremer.fr/doc/00286/39710/38165.pdf
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Musical Chairs on Temperate Reefs: Species Turnover and Replacement Within Functional Groups Explain Regional Diversity Variation in Assemblages Associated With Honeycomb Worms ArchiMer
Muller, Alexandre; Poitrimol, Camille; Nunes, Flavia; Boye, Aurelien; Curd, Amelia; Desroy, Nicolas; Firth, Louise B; Bush, Laura; Davies, Andrew J; Lima, Fernando P; Marzloff, Martin; Meneghesso, Claudia; Seabra, Rui; Dubois, Stanislas.
Reef-building species are recognized as having an important ecological role and as generally enhancing the diversity of benthic organisms in marine habitats. However, although these ecosystem engineers have a facilitating role for some species, they may exclude or compete with others. The honeycomb worm Sabellaria alveolata (Linnaeus, 1767) is an important foundation species, commonly found from northwest Ireland to northern Mauritania, whose reef structures increase the physical complexity of the marine benthos, supporting high levels of biodiversity. Local patterns and regional differences in taxonomic and functional diversity were examined in honeycomb worm reefs from 10 sites along the northeastern Atlantic to explore variation in diversity across...
Tipo: Text Palavras-chave: Biodiversity; Taxonomic diversity; Functional diversity; Ecosystem engineer; Reef; Turnover.
Ano: 2021 URL: https://archimer.ifremer.fr/doc/00693/80506/83709.pdf
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Diversité structurelle et fonctionnelle des peuplements sablo-vaseux de Bretagne sud : Impact de l'expansion d'Haploops nirae ArchiMer
Rigolet, Carine.
This thesis aims here, based on the case of the Bay of Concarneau, to understand the impact of the development of dense populations of the tubiculous amphipod Haploops nirae on the structural and functional diversity of sandy-mud communities of South Brittany. The study of Haploops communities was developed on various levels of organization of life, from the specific role of Haploops nirae to functional role of Haploops community in the ecosystem passing through the description of the community composition and its role on the biodiversity. Our results suggest firstly that the functional role of Haploops nirae alone (filtration pressure, secondary production) is potentially important. Moreover, the physical changes induced by Haploops were found to have...
Tipo: Text Palavras-chave: Ampeliscidae; Réseau trophique; Diversité fonctionnelle; Macrofaune benthique; Diversité; Bretagne Sud; Espèce ingénieure; Ampeliscidae; Benthic macrofauna diversity; Food web; Functional diversity; Engineer species; South Brittany.
Ano: 2013 URL: http://archimer.ifremer.fr/doc/00134/24549/22582.pdf
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Climate change may have minor impact on zooplankton functional diversity in the Mediterranean Sea ArchiMer
Benedetti, Fabio; Ayata, Sakina-dorothee; Irisson, Jean-olivier; Adloff, Fanny; Guilhaumon, Francois.
Aim To assess the impact of climate change on the functional diversity of marine zooplankton communities. Location The Mediterranean Sea. Methods We used the functional traits and geographic distributions of 106 copepod species to estimate the zooplankton functional diversity of Mediterranean surface assemblages for the 1965-1994 and 2069-2098 periods. Multiple environmental niche models were trained at the global scale to project the species habitat suitability in the Mediterranean Sea and assess their sensitivity to climate change predicted by several scenarios. Simultaneously, the species traits were used to compute a functional dendrogram from which we identified seven functional groups and estimated functional diversity through Faith's index. We...
Tipo: Text Palavras-chave: Climate change; Functional diversity; Mediterranean Sea; Niche modelling; Null model; Zooplankton.
Ano: 2019 URL: https://archimer.ifremer.fr/doc/00490/60118/63460.pdf
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An attribute-diversity approach to functional diversity, functional beta diversity, and related (dis)similarity measures ArchiMer
Chao, Anne; Chiu, Chun-huo; Villéger, Sébastien; Sun, I-fang; Thorn, Simon; Lin, Yi-ching; Chiang, Jyh-min; Sherwin, William B..
Based on the framework of attribute diversity (a generalization of Hill numbers of order q), we develop a class of functional diversity measures sensitive not only to species abundances but also to trait‐based species‐pairwise functional distances. The new method refines and improves on the conventional species‐equivalent approach in three areas: (1) the conventional method often gives similar values (close to unity) to assemblages with contrasting levels of functional diversity; (2) when a distance metric is unbounded, the conventional functional diversity depends on the presence/absence of other assemblages in the study; (3) in partitioning functional gamma diversity into alpha and beta components, the conventional gamma is sometimes less than alpha. To...
Tipo: Text Palavras-chave: Attribute diversity; Diversity decomposition; Functional (dis)similarity; Functional beta diversity; Functional diversity; Hill numbers; Quadratic entropy; Species diversity; Species traits; Trait diversity.
Ano: 2019 URL: https://archimer.ifremer.fr/doc/00489/60082/63408.pdf
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Mare Incognitum: A Glimpse into Future Plankton Diversity and Ecology Research ArchiMer
Chust, Guillem; Vogt, Meike; Benedetti, Fabio; Nakov, Teofil; Villeger, Sebastien; Aubert, Anais; Vallina, Sergio M.; Righetti, Damiano; Not, Fabrice; Biard, Tristan; Bittner, Lucie; Benoiston, Anne-sophie; Guidi, Lionel; Villarino, Ernesto; Gaborit, Charlie; Cornils, Astrid; Buttay, Lucie; Irisson, Jean-olivier; Chiarello, Marlene; Vallim, Alessandra L.; Blanco-bercial, Leocadio; Basconi, Laura; Guilhaumon, Francois; Ayata, Sakina-dorothee.
With global climate change altering marine ecosystems, research on plankton ecology is likely to navigate uncharted seas. Yet, a staggering wealth of new plankton observations, integrated with recent advances in marine ecosystem modeling, may shed light on marine ecosystem structure and functioning. A EuroMarine foresight workshop on the “Impact of climate change on the distribution of plankton functional and phylogenetic diversity” (PlankDiv) identified five grand challenges for future plankton diversity and macroecology research: (1) What can we learn about plankton communities from the new wealth of high-throughput “omics” data? (2) What is the link between plankton diversity and ecosystem function? (3) How can species distribution models be adapted to...
Tipo: Text Palavras-chave: Plankton; Macroecology; Species distribution; Functional diversity; Climate change; Habitat modeling.
Ano: 2017 URL: https://archimer.ifremer.fr/doc/00625/73739/74755.pdf
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Chronic Polyaromatic Hydrocarbon (PAH) Contamination Is a Marginal Driver for Community Diversity and Prokaryotic Predicted Functioning in Coastal Sediments ArchiMer
Jeanbille, Mathilde; Gury, Jérôme; Duran, Robert; Tronczynski, Jacek; Ghiglione, Jean-françois; Agogué, Hélène; Saïd, Olfa Ben; Taïb, Najwa; Debroas, Didier; Garnier, Cédric; Auguet, Jean-christophe.
Benthic microorganisms are key players in the recycling of organic matter and recalcitrant compounds such as polyaromatic hydrocarbons (PAHs) in coastal sediments. Despite their ecological importance, the response of microbial communities to chronic PAH pollution, one of the major threats to coastal ecosystems, has received very little attention. In one of the largest surveys performed so far on coastal sediments, the diversity and composition of microbial communities inhabiting both chronically contaminated and non-contaminated coastal sediments were investigated using high-throughput sequencing on the 18S and 16S rRNA genes. Prokaryotic alpha-diversity showed significant association with salinity, temperature, and organic carbon content. The effect of...
Tipo: Text Palavras-chave: Microbial communities; PAH; Chronic contamination; Coastal sediment; Functional diversity.
Ano: 2016 URL: http://archimer.ifremer.fr/doc/00347/45854/45522.pdf
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Response and Effect Traits of Coral Reef Fish ArchiMer
Hadj-hammou, Jeneen; Mouillot, David; Graham, Nicholas A. J..
The response-and-effect framework is a trait-based approach that seeks to break down the mechanistic links between ecosystem disturbances, species' traits, and ecosystem processes. We apply this framework to a review of the literature on coral reef fish traits, in order to illustrate the research landscape and structure a path forward for the field. Traits were categorized into five broad groupings: behavioral, life history, morphological, diet, and physiological. Overall, there are fewer studies linking effect traits to ecosystem processes (number of papers on herbivory, n = 14; predation, n = 12; bioerosion, n = 2; nutrient cycling, n = 0) than there are linking response traits to disturbances (climate change, n = 26; fishing, n = 20; pollution, n = 4)....
Tipo: Text Palavras-chave: Ecosystem processes; Environmental disturbances; Functional diversity; Coral reef ecology; Ecosystem function; Trait-based ecology; Systematic review.
Ano: 2021 URL: https://archimer.ifremer.fr/doc/00688/79975/82919.pdf
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Assessing functional diversity: the influence of the number of the functional traits ArchiMer
Legras, Gaëlle; Loiseau, Nicolas; Gaertner, Jean-claude; Poggiale, J-c.; Gaertner-mazouni, N..
The impact of the variation of the number of functional traits on functional diversity assessment is still poorly known. Although the covariation between these two parameters may be desirable in some situations (e.g. if adding functional traits provides relevant new functional information), it may also result from mathematical artefacts and lead to misinterpretation of the results obtained. Here, we have tested the behaviour of a set of nine indices widely used for assessing the three main components of functional diversity (i.e. functional richness, evenness and divergence), according to the variation in the number of functional traits. We found that the number of functional traits may strongly impact the values of most of the indices considered, whatever...
Tipo: Text Palavras-chave: Functional traits; Dissimilarity metric; Functional diversity; Index sensitivity; Trend analysis.
Ano: 2020 URL: https://archimer.ifremer.fr/doc/00503/61438/65561.pdf
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Alternatives to taxonomic-based approaches to assess changes in transitional water communities ArchiMer
Mouillot, D; Spatharis, S; Reizopoulou, S; Laugier, Thierry; Sabetta, L; Basset, A; Chi, T.
1. Transitional waters, described as critical transition zones because of their position at terrestrial, freshwater and marine interfaces, provide essential goods and services to the biosphere including human populations. These ecotones face increasing human influence mainly due to population density increase in coastal areas. 2. Transitional water bodies have, to date, received little attention in the development of ecological status indicators, this is a critical deficiency when trying to meet the Water Framework Directive objective of all significant water bodies achieving good ecological status by the year 2015. 3. In order to assess changes in transitional water communities many taxonomic-based indicators have already been proposed but there are a...
Tipo: Text Palavras-chave: Biotic descriptors; Productivity; Functional diversity; Functional traits; Body size; Water Framework Directive WFD.
Ano: 2006 URL: http://archimer.ifremer.fr/doc/2006/publication-1849.pdf
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Microbial functional diversity: From concepts to applications ArchiMer
Escalas, Arthur; Hale, Lauren; Voordeckers, James W.; Yang, Yunfeng; Firestone, Mary K.; Alvarez‐cohen, Lisa; Zhou, Jizhong.
Functional diversity is increasingly recognized by microbial ecologists as the essential link between biodiversity patterns and ecosystem functioning, determining the trophic relationships and interactions between microorganisms, their participation in biogeochemical cycles, and their responses to environmental changes. Consequently, its definition and quantification have practical and theoretical implications. In this opinion paper, we present a synthesis on the concept of microbial functional diversity from its definition to its application. Initially, we revisit to the original definition of functional diversity, highlighting two fundamental aspects, the ecological unit under study and the functional traits used to characterize it. Then, we discuss how...
Tipo: Text Palavras-chave: Functional diversity; Functional traits; Microbial communities; Theoretical frameworks of diversity; Trait-based ecology.
Ano: 2019 URL: https://archimer.ifremer.fr/doc/00584/69631/67487.pdf
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