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SBGN-ED - a tool for editing, validating, and translating of SBGN maps 17
Tobias Czauderna; Christian Klukas; Astrid Junker; Falk Schreiber.
The recently proposed Systems Biology Graphical Notation (SBGN) provides a standard for the visual representation of biochemical and cellular processes. SBGN helps to communicate biological knowledge more efficient and accurate between different research communities in the life sciences. However, to support SBGN, methods and tools for editing, validating, and translating of SBGN maps are necessary.

We present methods for these tasks, the tool SBGN-ED, and an application example. SBGN-ED allows to create all three types of SBGN maps from scratch, to validate these maps for syntactical and semantical correctness, to translate maps from the KEGG and MetaCrop databases into SBGN, and to export SBGN maps into several file and...
Tipo: Poster Palavras-chave: Biotechnology; Bioinformatics.
Ano: 2010 URL: http://precedings.nature.com/documents/4973/version/1
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Novel developments in SBGN-ED and applications 17
Tobias Czauderna; Eva Grafahrend-Belau; Astrid Junker; Anja Hartmann; Matthias Klapperstück; Falk Schreiber.
Systems Biology Graphical Notation (SBGN, http://sbgn.org) [1] is an emerging standard for graphical representations of biochemical and cellular processes studied in systems biology. Three different views (Process Description, Entity Relationship, and Activity Flow) cover several aspects of the represented processes in different levels of detail. SBGN helps to communicate biological knowledge more efficient and accurate between different research communities in the life sciences. However, to support SBGN, methods and tools for editing, validating, and translating of SBGN maps are necessary.
We present methods for these tasks and novel developments in SBGN-ED (www.sbgn-ed.org) [2], a tool which allows to create all three types of SBGN maps...
Tipo: Poster Palavras-chave: Bioinformatics; Plant Biology; Data Standards.
Ano: 2011 URL: http://precedings.nature.com/documents/6415/version/1
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