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Use of an ecosystem model for the assessment of the influence of cultivated oysters (Crassostrea gigas) on the nitrogen cycling in the Marennes-Oleron Bay ArchiMer
Bacher, Cedric.
A model of the growth of cultivated oyster in the Marennes-Oléron bay was developped to assess the influence of the nutrients input and of the amount of oysters on the growth performance (Railiard. 1991). The ecosystem main characteristics are: - short residence time of the water. - high turbidity level, depending on the season, tidal level, bathymetry, currents and wind. The turbidity acts on the primary production through light limitation and on oyster production as a food dilution factor. - presence of high density cultivated areas on mid-tidal flats. The amount of oysters is ranging between 80 000 and 110 000 tons according to the year. - spatial variability of the biological and physical features. - coupling effects of the physic process (transport,...
Tipo: Text Palavras-chave: Ecosystem model; Oyster; Crassostrea gigas; Nitrogen cycling; Marennes Oleron Bay; Charente Maritime.
Ano: 1993 URL: http://archimer.ifremer.fr/doc/00102/21300/18914.pdf
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Cartographie krigée des mollusques suspensivores compétiteurs trophiques des huîtres du bassin de Marennes-Oléron : l'implications pour la planification de l'échantillonnage ArchiMer
Sauriau, Pierre-guy; Bacher, Cedric.
Stock assessement of wild soft-bottom mol/uses has been part of a general approach to shellfish management in oyster farming in Marennes-Oleron Bay. A sampling survey is described as a stratified random sampling after optimum allocation of the sample sire in each stratum. The aim of this study is ta ilIustrate the use of kriging techniques in the case of suspension-feeders. Regarding suspension-feeding molluscs. trophic competitors of the oyster Crassostrea gigas the whole stratified design produced an estimation with a precision around 25%. Then the geostatistical technique. i.e. kriging was used to depict the spatial and variability patterns of several trophic groups. The biomass data are expressed in ash-free. dry-weight units. In addition, the...
Tipo: Text Palavras-chave: Marennes Oléron; Crassostrea gigas; Krigeage; Suspensivore; Echantillonnage stratifié; Peuplement benthique.
Ano: 1991 URL: http://archimer.ifremer.fr/doc/1991/publication-3055.pdf
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Modélisation de l'écosystème du bassin de Marennes-Oléron ArchiMer
Bacher, Cedric; Menesguen, Alain; Raillard, Olivier; Heral, Maurice; Deslous-paoli, Jean-marc; Razet, Daniel.
Une approche analytique permet de coupler un modèle physique avec un modèle biologique qui prédit la croissance des huîtres en fonction de la quantité, de la qualité de la nourriture particulaire et de la température. Ce modèle montre clairement l'effet de surcharge du bassin induisant un ralentissement des performances de croissance avec un gradient marqué du nord au sud. Un modèle phytoplanctonique basé sur les apports respectifs en nitrates de la Charente et de l'océan permet de prédire la production primaire en fonction de la température et de la transparence de l'eau. Une simulation supprimant les apports de la Charente permet de préciser la quantité de phytoplancton dépendant de ces apports. Un troisième modè le s'applique à représenter dans une...
Tipo: Text Palavras-chave: Modèle de croissance huîtres; Modèle phytoplanctonique; Remise en suspension; Marennes-Oléron.
Ano: 1990 URL: http://archimer.ifremer.fr/doc/00439/55045/56481.pdf
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Assessing the sensitivity of bivalve populations to global warming using an individual-based modelling approach ArchiMer
Thomas, Yoann; Bacher, Cedric.
Climate change exposes benthic species populations in coastal ecosystems to a combination of different stressors (e.g. warming, acidification and eutrophication), threatening the sustainability of the ecological functions they provide. Thermal stress appears to be one of the strongest drivers impacting marine ecosystems, acting across a wide range of scales, from individual metabolic performances to geographic distribution of populations. Accounting for and integrating the response of species functional traits to thermal stress is therefore a necessary step in predicting how populations will respond to the warming expected in coming decades. Here, we developed an individual‐based population model using a mechanistic formulation of metabolic processes...
Tipo: Text Palavras-chave: Benthic species; Biogeography; Climate scenario; Dynamic energy budget; Global warming; Phenology; Population dynamics; Temperature tolerance.
Ano: 2018 URL: https://archimer.ifremer.fr/doc/00450/56163/57710.pdf
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Spatial, Ecological and Social Dimensions of Assessments for Bivalve Farming Management ArchiMer
Bacher, Cedric; Gangnery, Aline; Cugier, Philippe; Mongruel, Remi; Strand, Oivind; Frangoudes, Katia.
The general purpose of assessment is to provide decision-makers with the best valuable data, information, and predictions with which management decisions will be supported. Using case studies taken from four scientific projects and dealing with the management of marine bivalve resources, lessons learned allowed identifying some issues regarding assessment approaches. The selected projects also introduced methodological or institutional frameworks: ecosystem approach to aquaculture (EAA), system approach framework (SAF), marine spatial planning (MSP), and valuation of ecosystem services (ES). The study on ecosystem services linked ES to marine habitats and identified ES availability and vulnerability to pressures. The results were displayed as maps of...
Tipo: Text Palavras-chave: Ecosystem services; Marine spatial planning; Ecosystem approach to aquaculture; System approach; Modeling; Stakeholder involvement.
Ano: 2019 URL: https://archimer.ifremer.fr/doc/00470/58138/60608.pdf
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Assessment and interpretation of temporal or spactial differences in shellfish productivity of typical French ecosystems ArchiMer
Mazurie, Joseph; Soletchnik, Patrick; Ropert, Michel; Fleury, Pierre-gildas; Auby, Isabelle; Maurer, Daniele; Bacher, Cedric.
Monitoring of Crassostrea gigas performances, from two year-classes, during 12 years, in various French shellfish farming areas have revealed great inter-annual and inter-sites differences in reproduction, growth, mortality or quality of oysters (meat content, Polydora infestation...). The presentation attempts to highlight how a comparative analysis of existing temporal or spatial data on molluscs, water quality, geography or meteorogoly may help to better understand and manage shellfish ecosystems. The range of hydrobiological conditions (food availability, turbidity, temperature...) recorded at national, pluriannual scale, in relation to shellfish performances, enlarges the base of such relationship. However, undirect causative factors, either natural...
Tipo: Text Palavras-chave: Climatic modulation; Hydro geography; Reproduction; Growth; Spatial differences; Water quality; Mortality; Shellfish productivity.
Ano: 2005 URL: http://archimer.ifremer.fr/doc/2005/acte-3318.pdf
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Modeling trace metal accumulation in the mediterranean mussel, mytilus galloprovincialis ArchiMer
Casas, Stellio; Cossa, Daniel; Gonzalez, Jean-louis; Bacher, Cedric; Andral, Bruno.
Monitoring coastal contamination by trace metals pollution using mollusks bivalves as quantitative bioindicators is widely performed in many international biomonitoring programs. In this purpose, modeling metal dynamic in marine mussels is a reliable tool. It allows understanding the bioaccumulation process which results from the interactions between biological, chemical and environmental factors. To calibrate such a model, kinetic experiments on uptake and elimination were conducted on three Mediterranean sites chosen on the basis of their different nutritive and chemical characteristics.
Tipo: Text Palavras-chave: Growth; Heavy metals; Bioaccumulation; Mytilus galloprovincialis; Bioindicator.
Ano: 2004 URL: http://archimer.ifremer.fr/doc/2004/acte-370.pdf
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Informing Marine Spatial Planning (MSP) with numerical modelling: A case-study on shellfish aquaculture in Malpeque Bay (Eastern Canada) ArchiMer
Filgueira, Ramon; Guyondet, Thomas; Bacher, Cedric; Comeau, Luc A..
A moratorium on further bivalve leasing was established in 1999–2000 in Prince Edward Island (Canada). Recently, a marine spatial planning process was initiated explore potential mussel culture expansion in Malpeque Bay. This study focuses on the effects of a projected expansion scenario on productivity of existing leases and available suspended food resources. The aim is to provide a robust scientific assessment using available datasets and three modelling approaches ranging in complexity: (1) a connectivity analysis among culture areas; (2) a scenario analysis of organic seston dynamics based on a simplified biogeochemical model; and (3) a scenario analysis of phytoplankton dynamics based on an ecosystem model. These complementary approaches suggest (1)...
Tipo: Text Palavras-chave: Physical-biogeochemical model; Marine spatial planning; Aquaculture; Carrying capacity; Ecosystem-based management.
Ano: 2015 URL: http://archimer.ifremer.fr/doc/00279/39050/37622.pdf
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Amélioration de l'évaluation des stocks de mollusques cultivés en Charente- Maritime ArchiMer
Bacher, Cedric; Deslous-paoli, Jean-marc; Heral, Maurice; Prou, Jean.
The expansion of shellfish culture businesses (oysters, mussels, clams...) gives way to a competition for the use of limited food resources, especially in the Marennes-Oléron basin where water circulation is slow. Increasing the amount of cultivated molluscs leads, from a biological point of view, to:- a drop in growth performances- a rise in chronic mortalities, higher and higher, due to a weakness in the physiological state with a lack of stocks which would have compensated the habitat seasonal shortages (end of winter, etc...)- a greater weakness to diseases, linked to a deficient physiological state and a density rise which increases the proximity rate and thus, parasite propagation speed.For these primary reasons, and for the future of oyster culture,...
Tipo: Text Palavras-chave: Modélisation; Estimation; Echantillonnage; Mollusques; Marennes Oléron; Evaluation stocks.
Ano: 1986 URL: http://archimer.ifremer.fr/doc/1986/rapport-3841.PDF
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La capacité biotique des bassins ostréicoles ArchiMer
Heral, Maurice; Bacher, Cedric; Deslous-paoli, Jean-marc.
Maurice Héral has been studying, since 1976 at the IFREMER Station of La Tremblade (France), the trophic networks of shellfish-farming ecosystems and, especially, the variability of available food, energy assessment, the ecophysiology of the Japanese oyster; he has set up a comprehensive model of shellfish farming production. He has been managing the Shellfish Farming Ecosystems Laboratory (LEC) since 1980. A specialist of digital models, Cédric Bacher has been working at the LEC since 1985. He invented a strategy of sampling farmed molluscs' biomass and a preliminary, analytic trophic model that combines physical and biological systems. Jean-Marc Deslous-Paoli has been a member of the same laboratory since 1979, where his work focuses on monitoring...
Tipo: Text Palavras-chave: Modèle analytique; Modélisation; Modéle global; Production; Capacité trophique; Biomasse; Climatologie; Captage naissain; Bassin Marennes Oléron.
Ano: 1989 URL: http://archimer.ifremer.fr/doc/1989/publication-3011.pdf
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Possibilities to prevent Crassostrea gigas oyster summer mortality in France ArchiMer
Samain, Jean-francois; Ropert, Michel; Bedier, Edouard; Soletchnik, Patrick; Mazurie, Joseph; Le Coz, Florence; Blin, Jean-louis; Mille, Dominique; Pajot, Régis; Haffray, Patrick; Bacher, Cedric; Grangere, Karine; Grangere, Karine; Pouvreau, Stephane; Bourles, Yves; Gohin, Francis; Woerther, Patrice; Boudry, Pierre.
Summer mortality has been reported in the Pacific oyster, Crassostrea gigas, for many years in Japan, US and Europe. It affects both adults and juveniles and the causes of this phenomenon are complex. Environmental, physiological or pathological putative causes were studied all over the world. Recently, the MOREST project ((MORtalitEStivale) a multidisciplinary project (2001-2005) focused on his problem led to a better understanding of this phenomenon in France. The results showed in these geographical conditions, the main interactions between the oysters, their environment and certain pathogens.
Tipo: Text Palavras-chave: Interaction model; Environmental parameters; Summer mortality; Crassostrea gigas; Pacific oyster.
Ano: 2006 URL: https://archimer.ifremer.fr/doc/2006/acte-3476.pdf
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Temporal changes in the phytoplankton community along the French coast of the eastern English Channel and the southern Bight of the North Sea ArchiMer
Hernandez- Farinas, Tania; Soudant, Dominique; Barille, Laurent; Belin, Catherine; Lefebvre, Alain; Bacher, Cedric.
Long-term trends in the phytoplankton community along the French coast of the English Channel and southern Bight of the North Sea were studied and related to physico-chemical factors and large-climatic indices. Phytoplankton and hydrological data were acquired through three transects. Sampling took place between 1992 and 2011 as part of the French Phytoplankton Monitoring Network (REPHY) and the Regional Nutrients Monitoring Network (SRN). Trends in time-series were identified with dynamic linear models tailored to environmental monitoring data characteristics (e.g. irregular sampling frequency, missing data). Temporal and spatial patterns in the phytoplankton community were explained with a partial triadic analysis. Relationships between the phytoplankton...
Tipo: Text Palavras-chave: Climatic indicators; Dynamic linear model; Environmental drivers; Multivariate analysis; Phytoplankton.
Ano: 2014 URL: http://archimer.ifremer.fr/doc/00195/30619/32177.pdf
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Rapport sur les causes des mortalités d'huîtres creuses observées en juin 1992 sur le Banc de Ronce Les Bains (Bassin de Marennes-Oléron) ArchiMer
Heral, Maurice; Bacher, Cedric; Razet, Daniel; Prou, Jean; Galgani, Francois; Renault, Tristan; Bodoy, Alain; Garnier, Jacqueline; Geairon, Philippe; Chagot, Dominique; Grizel, Henri; Comps, Michel; Masson, Daniel; Noinin, Michel.
Dès le 4 JUIN 1992, un ostréiculteur digne de confiance avait signalé aux services d'IFREMER, une situation anormale sur le banc de Ronce les Bains. Un premier prélèvement a été effectué le jour même. En effet, ce secteur avait déjà été le lieu de mortalités d'huitres estimées à 7 000 tonnes, au printemps 1988, et s'est révélé par le passé comme étant un endroit sensible. Pour information, figure en annexe le rapport établi en 1988, à destination du Préfet de la Charente Maritime. Ces mortalités ayant rapidement pris de l'ampleur, un dépôt de plainte contre X a été effectué par la Section Régionale de la Conchyliculture. A la suite de quoi, les services d'IFREMER ont été requis par la Gendarmerie Nationale (Brigade de Marennes) le 10 juin 1992, pour...
Tipo: Text Palavras-chave: Ostréiculture; Huîtres creuses; Crassostrea gigas; Mortalité; Banc de Ronce Les Bains; Bassin de Marennes Oléron.
Ano: 1992 URL: http://archimer.ifremer.fr/doc/00048/15899/13327.pdf
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Modelling the effect of food depletion on scallop growth in Sungo Bay (China) ArchiMer
Bacher, Cedric; Grant, Jon; Hawkins, Anthony; Fang, Jianguang; Zhu, Mingyuan; Besnard, Melanie.
Sungo Bay (China) has a mean depth of 10 m, a total area of 140 km(2) and is occupied by several types of aquaculture, whilst opening to the ocean. The production of scallops (Chlamys farreri) cultured on long lines is estimated to exceed 50 000 tonnes (total weight) per year. Selection of sites for scallop growth and determination of suitable rearing densities have become important issues. In this study, we focused on the local scale (e.g. 1000 m) where rearing density, food concentration and hydrodynamics interact. We have developed a depletion model coupling a detailed model of C. farreri feeding and growth and a one-dimensional horizontal transport equation. The model was applied to assess the effect of some environmental parameters (e.g. food...
Tipo: Text Palavras-chave: Chlamys farreri; Transport equation; Rearing density; Energy budget.
Ano: 2003 URL: https://archimer.ifremer.fr/doc/2003/publication-570.pdf
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A probabilistic approach of flow-balanced network based on Markov chains ArchiMer
Leguerrier, Delphine; Bacher, Cedric; Benoit, Eric; Niquil, Nathalie.
We used Markov chains to assess residence time, first passage time, rare of transfers between compartments, recycling index with a general mathematical formalism. Such a description applies to any flow-balanced system that can be modelled as a series of discrete stages or compartments through which matter flows. We derived a general set of equations from a probabilistic approach and applied them to a food web and a physical system derived from the literature. We therefore analysed preferential pathways of matter and behaviour of these systems and showed how it was possible to build up and exploit indices on the basis of a transition probability matrix describing the network, and to characterize with a generic algorithm: (1) the total indirect relationships...
Tipo: Text Palavras-chave: First passage time; Box model; Food web model; Network; Transfer rate; Residence time; Markov chain.
Ano: 2006 URL: http://archimer.ifremer.fr/doc/2006/publication-2268.pdf
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Use of the kriging method for the stock assessment of oysters in the Chesapeake Bay ArchiMer
Bacher, Cedric; Chai, Ai-ling; Goulletquer, Philippe.
The krlging technique Is now employed ln more and more fields: mlnlng (Journel. 1977), hydrology (Delhomme, 197B; Shamsi et al" 1988; Dingman et al" 1988), fishery (Conan, 1989) and ecology (Robertson, 1987; Schotzko and O'Keeffe, 1989, 1990). Recent developments of the mathematlcal theory tend to extend the number of applications where Il may be used. Baslcally defined for the case of a statlonary spatial process, It now encompasses more general processes assuming less and less strong hypotheses (Intrinsic hypothesls, Intrlnsic generalised hypothesis, disjunctive krlglng). In its most general formulation, it allows to study the spatial structure of a process including large scale or local trends. The basic idea remains to take Into account the spatial...
Tipo: Text Palavras-chave: Kringing technique; Stock assessment; Oysters; Crassostrea virginica; Chesapeake Bay.
Ano: 1991 URL: http://archimer.ifremer.fr/doc/00200/31110/29518.pdf
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Dynamic model of the short-term variability of microphytobenthic biomass on temperate intertidal mudflats ArchiMer
Guarini, Jean-marc; Blanchard, Gf; Gros, Philippe; Gouleau, Dominique; Bacher, Cedric.
In the present paper, we list and document the relevant behavioral and physiological processes controlling primary productivity of epipelic microalgae on intertidal mudflats in order to develop a simplified model. We first propose, in an attempt to characterize the 'photosynthetically active biomass' of the epipelic community, a new approach to describe the photic environment at the sediment surface, by substituting a discrete a-layer model in place of continuous vertical light distribution. This concept thus allows us to build a functional representation of the distribution of the photosynthetically active biomass in the sediment and, by then integrating the light and temperature forcing of the latter biomass, to predict the dynamics of the whole epipelic...
Tipo: Text Palavras-chave: Microphytobenthos; Intertidal mudflat; Primary production; Dynamic model; Migratory rhythm; Ecophysiological response.
Ano: 2000 URL: http://archimer.ifremer.fr/doc/00000/10540/7601.pdf
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Empirical modelling of the growth of Ruditapes philippinarum by means of non linear regression on factorial coordinates ArchiMer
Goulletquer, Philippe; Bacher, Cedric.
In order to highlight the main factors accounting for the growth of clams in Marennes Oleron Bay, three locations were investigated in 1984-1985. First, factor analysis provided information on fluctuations of the environment. Second, principal components analysis was used to study ecological phenomena. The main axes explained the growth rate, which was included in an allometric model. Its properties were then studied by means of sensitivity analysis.
Tipo: Text Palavras-chave: Sensitivity analysis; Non linear model; Principal components analysis; Ruditapes philippinarum; Trophic relationships; Analyse de sensibilité; Modèle non linéaire; Analyse en composantes principales; Ruditapes philippinarum; Relations trophiques.
Ano: 1988 URL: http://archimer.ifremer.fr/doc/1988/publication-2879.pdf
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Modelling growth variability in longline mussel farms as a function of stocking density and farm design ArchiMer
Rosland, Rune; Bacher, Cedric; Strand, Oivind; Aure, Jan; Strohmeier, Tore.
Mussels (Mytilus edulis) are commonly cultivated on artificial structures like rafts, poles or longlines to facilitate farming operations. Farm structures and dense mussel populations may result in water flow reduction and seston depletion and thus reduced individual mussel growth and spatial growth variability inside a farm. One of the challenges in mussel farming is thus to scale and configure farms in order to optimise total mussel production and individual mussel quality under different environmental regimes. Here we present a spatially resolved model for simulation of flow reduction, seston depletion and individual mussel growth inside a longline farm based on information about farm configuration (spacing between longlines, farm length and stocking...
Tipo: Text Palavras-chave: Longline farm configuration; Environmental conditions; Flow reduction; Seston depletion; Spatial growth variability.
Ano: 2011 URL: http://archimer.ifremer.fr/doc/00038/14887/12210.pdf
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Use of dynamic energy budget and individual based models to simulate the dynamics of cultivated oyster populations ArchiMer
Bacher, Cedric; Gangnery, Aline.
We successfully tested a Dynamic Energy Budget (DEB) model of the oyster Crassostrea gigas using published environmental data and growth data collected in Than lagoon (France). Estimates of most DEB parameters were based on independent datasets and only two parameters were calibrated using our datasets: the shape parameter, which was used to convert body volume into shell length, and the half-saturation coefficient, which controlled the functional response of assimilation to food concentration, represented by chlorophyll-a concentration. The DEB model proved to be robust and generic: it was able to reproduce oyster growth in Than lagoon and other ecosystems. We also assessed population dynamics by coupling DEB equations and an Individual Based Model (IBM)...
Tipo: Text Palavras-chave: Thau Lagoon; Growth variability; Harvested production; Dynamic Energy Budget; Crassostrea gigas.
Ano: 2006 URL: http://archimer.ifremer.fr/doc/2006/publication-2329.pdf
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