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| Manel, Stéphanie; Guerin, Pierre-edouard; Mouillot, David; Blanchet, Simon; Velez, Laure; Albouy, Camille; Pellissier, Loïc. |
| Genetic diversity is estimated to be declining faster than species diversity under escalating threats, but its spatial distribution remains poorly documented at the global scale. Theory predicts that similar processes should foster congruent spatial patterns of genetic and species diversity, but empirical studies are scarce. Using a mined database of 50,588 georeferenced mitochondrial DNA barcode sequences (COI) for 3,815 marine and 1,611 freshwater fish species respectively, we examined the correlation between genetic diversity and species diversity and their global distributions in relation to climate and geography. Genetic diversity showed a clear spatial organisation, but a weak association with species diversity for both marine and freshwater species.... |
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| Ano: 2020 |
URL: https://archimer.ifremer.fr/doc/00609/72076/70788.pdf |
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| Danchin, Etienne; Pocheville, Arnaud; Rey, Olivier; Pujol, Benoit; Blanchet, Simon. |
| After decades of debate about the existence of non-genetic inheritance, the focus is now slowly shifting towards dissecting its underlying mechanisms. Here, we propose a new mechanism that, by integrating non-genetic and genetic inheritance, may help build the long-sought inclusive vision of evolution. After briefly reviewing the wealth of evidence documenting the existence and ubiquity of non-genetic inheritance in a table, we review the categories of mechanisms of parent-offspring resemblance that underlie inheritance. We then review several lines of argument for the existence of interactions between non-genetic and genetic components of inheritance, leading to a discussion of the contrasting timescales of action of non-genetic and genetic inheritance.... |
| Tipo: Text |
Palavras-chave: Non-genetic inheritance; Inclusive heritability; Epigenetics; Central dogma; Genetic assimilation; Mutation randomness; Inclusive evolutionary synthesis. |
| Ano: 2019 |
URL: https://archimer.ifremer.fr/doc/00479/59037/62430.pdf |
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| Mathieu-begne, Eglantine; Loot, Geraldine; Blanchet, Simon; Toulza, Eve; Genthon, Clemence; Rey, Olivier. |
| Tracheliastes polycolpus is an ectoparasitic copepod that recently emerged in western Europe and that infects several freshwater fish species. Its recent successful spread might be due to its fascinating ability to shift to new host populations and/or species. Here, we present the first non-redundant and protein-coding de novo transcriptome assembly for T. polycolpus along with a quality assessment and reliable transcript annotations. This assembly was built from fifteen adult female parasites sampled from three different host species from a single river in southwestern France. Overall, 17,157 non-redundant contigs likely corresponding to protein-coding transcripts were identified, of which 13,093 (i.e., 76%) were successfully annotated. This assembly... |
| Tipo: Text |
Palavras-chave: Copepods; Monoxenous parasite; Parasite specificity; Curation. |
| Ano: 2019 |
URL: https://archimer.ifremer.fr/doc/00615/72737/75012.pdf |
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| Prunier, Jérôme G.; Saint‐pé, Keoni; Blanchet, Simon; Loot, Géraldine; Rey, Olivier. |
| Inferring parameters related to the aggregation pattern of parasites and to their dispersal propensity are important for predicting their ecological consequences and evolutionary potential. Nonetheless, it is notoriously difficult to infer these parameters from wildlife parasites given the difficulty in tracking these organisms. Molecular‐based inferences constitute a promising approach that has yet rarely been applied in the wild. Here, we combined several population genetic analyses including sibship reconstruction to document the genetic structure, patterns of sibship aggregation, and the dispersal dynamics of a non‐native parasite of fish, the freshwater copepod ectoparasite Tracheliastes polycolpus. We collected parasites according to a hierarchical... |
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Palavras-chave: Full‐sibs; Genetic structure; Parasite dispersal; Parentage analysis; Tracheliastes polycolpus; Transmission. |
| Ano: 2021 |
URL: https://archimer.ifremer.fr/doc/00693/80499/83694.pdf |
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| Tedesco, Pablo A; Beauchard, Olivier; Bigorne, Remy; Blanchet, Simon; Buisson, Laetitia; Conti, Lorenza; Cornu, Jean-francois; Dias, Murilo S.; Grenouillet, Gael; Hugueny, Bernard; Jezequel, Celine; Leprieur, Fabien; Brosse, Sebastien; Oberdorff, Thierry. |
| A growing interest is devoted to global-scale approaches in ecology and evolution that examine patterns and determinants of species diversity and the threats resulting from global change. These analyses obviously require global datasets of species distribution. Freshwater systems house a disproportionately high fraction of the global fish diversity considering the small proportion of the earth's surface that they occupy, and are one of the most threatened habitats on Earth. Here we provide complete species lists for 3119 drainage basins covering more than 80% of the Earth surface using 14953 fish species inhabiting permanently or occasionally freshwater systems. The database results from an extensive survey of native and non-native freshwater fish species... |
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| Ano: 2017 |
URL: https://archimer.ifremer.fr/doc/00405/51634/74670.pdf |
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| Blanchet, Simon; Prunier, Jérôme G.; Paz‐vinas, Ivan; Saint‐pé, Keoni; Rey, Olivier; Raffard, Allan; Mathieu‐bégné, Eglantine; Loot, Géraldine; Fourtune, Lisa; Dubut, Vincent. |
| Rivers are fascinating ecosystems in which the eco‐evolutionary dynamics of organisms are constrained by particular features, and biologists have developed a wealth of knowledge about freshwater biodiversity patterns. Over the last 10 years, our group used a holistic approach to contribute to this knowledge by focusing on the causes and consequences of intraspecific diversity in rivers. We conducted empirical works on temperate permanent rivers from southern France, and we broadened the scope of our findings using experiments, meta‐analyses, and simulations. We demonstrated that intraspecific (genetic) diversity follows a spatial pattern (downstream increase in diversity) that is repeatable across taxa (from plants to vertebrates) and river systems. This... |
| Tipo: Text |
Palavras-chave: Conservation genetics; Dendritic networks; Eco‐evolutionary dynamics; Ecosystem services; Intraspecific diversity. |
| Ano: 2020 |
URL: https://archimer.ifremer.fr/doc/00617/72935/71954.pdf |
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