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	Provedor de dados Nature Precedings (10) Autor Frank T. Bergmann (10) Sarah M. Keating (3) Brett G. Olivier (1) Dagmar Waltemath (1) Darren J. Wilkinson (1) James C. Schaff (1) Lucian P. Smith (1) Michael Hucka (1) Nicolas Le Novere (1) Richard Adams (1) Stefan Hoops (1) Sven Sahle (1) Mais... Palavra-chave Bioinformatics (9) Data Standards (7) Biotechnology (1) Molecular Cell Biology (1) Tipo do documento Presentation (6) Manuscript (4) Ano 2012 (1) 2011 (6) 2010 (3) País United Kingdom (10)		Ordenar por:  Relevância Autor Título Ano Registros recuperados: 10 Primeira ... 1 ... Última Progress report: SBML Level 3 package FBA Nature Precedings Brett G. Olivier; Frank T. Bergmann. The SBML Level 3 "FBA" package is a proposal for an extension to the current Level 3 Core specification that allows for the description and annotation of constraint based models.

This allows one to e.g. store information related to flux balance analysis in SBML Level 3 models. Tipo: Presentation Palavras-chave: Bioinformatics; Data Standards. Ano: 2010 URL: http://precedings.nature.com/documents/5033/version/1 SBRML Interoperability Nature Precedings Frank T. Bergmann. This presentation summarizes an initial meeting of SED-ML and SBRML editors in order to facilitate reuse and sharing of components of each language. Tipo: Presentation Palavras-chave: Bioinformatics; Data Standards. Ano: 2011 URL: http://precedings.nature.com/documents/6329/version/1 SBML Team facilities & software Nature Precedings Frank T. Bergmann; Sarah M. Keating. This presentation provides a brief overview of the new SBML online validator and the updates in the SBML Tool Matrix. This presentation ends with an update on the new version of the SBML Toolbox. Tipo: Presentation Palavras-chave: Bioinformatics; Data Standards. Ano: 2011 URL: http://precedings.nature.com/documents/6401/version/1 SED-ML: Nested Simulation Proposal Nature Precedings Frank T. Bergmann. This document describes a second version of the proposal for nested simulation experiments for SED-ML (http://sed-ml.org). The proposal has been updated to include the feedback received in the meantime and has been enhanced by examples. A full implementation is available with libSedML (http://libsedml.sf.net) and the SED-ML Web Tools (http://sysbioapps.dyndns.org/SED-ML_Web_Tools/) Tipo: Manuscript Palavras-chave: Bioinformatics; Data Standards. Ano: 2012 URL: http://precedings.nature.com/documents/4257/version/2 The Simulation Experiment Description Markup Language - Update Nature Precedings Frank T. Bergmann. This presentation gives a brief overview of the Simulation Experiment Description Markup Language L1V1 as well as an introduction to LibSedML (http://libsedml.sf.net) a library for reading and writing SED-ML documents. Tipo: Presentation Palavras-chave: Biotechnology; Bioinformatics. Ano: 2011 URL: http://precedings.nature.com/documents/5589/version/1 libSBML New conversion API Nature Precedings Sarah M. Keating; Frank T. Bergmann. Description of the new API for including converters within libSBML. Tipo: Presentation Palavras-chave: Data Standards. Ano: 2011 URL: http://precedings.nature.com/documents/6395/version/1 The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 1 Core Nature Precedings Michael Hucka; Frank T. Bergmann; Stefan Hoops; Sarah M. Keating; Sven Sahle; James C. Schaff; Lucian P. Smith; Darren J. Wilkinson. This is the final specification for _Release 1_ of *SBML Level 3 Version 1 Core*, an electronic model representation format for systems biology.

SBML is oriented towards describing biological processes of the sort common in research on a number of topics, including metabolic pathways, cell signaling pathways, and many others. SBML is defined neutrally with respect to programming languages and software encoding; however, it is oriented primarily towards allowing models to be encoded using XML. This document contains many examples of SBML models written in XML.

More information about SBML and this specification is available online at... Tipo: Manuscript Palavras-chave: Bioinformatics; Data Standards. Ano: 2010 URL: http://precedings.nature.com/documents/4959/version/1 SED-ML Web Tools Nature Precedings Frank T. Bergmann. This presentation gives a brief update of the current state of the libSedML library and its new capabilities (like the simulation of CellML models) and the SED-ML Script Editor. 
Following I introduce the SED-ML Web Tools, an online application for creating, editing, simulating and validating SED-ML documents. The web application also provides a W3C Web Service, exposing all functionality. Tipo: Presentation Palavras-chave: Molecular Cell Biology; Bioinformatics. Ano: 2011 URL: http://precedings.nature.com/documents/6328/version/1 Simulation Experiment Description Markup Language (SED-ML) : Level 1 Version 1 Nature Precedings Dagmar Waltemath; Frank T. Bergmann; Richard Adams; Nicolas Le Novere. The Simulation Experiment Description Markup Language (SED-ML) is an XML-based format for encoding simulation experiments, following the requirements defined in the MIASE guidelines. SED-ML allows one to define the model to use, the experimental task to run, and which result to produce. Tipo: Manuscript Palavras-chave: Bioinformatics; Data Standards. Ano: 2011 URL: http://precedings.nature.com/documents/5846/version/1 A Simple Nested Simulation for SED-ML Nature Precedings Frank T. Bergmann. This document describes a simple nested Simulation Experiment for SED-ML [1] that is easy to implement and will help to broaden what SED-ML is able to encode. Tipo: Manuscript Palavras-chave: Bioinformatics. Ano: 2010 URL: http://precedings.nature.com/documents/4257/version/1 Registros recuperados: 10 Primeira ... 1 ... Última

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