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SBML Level 3 Hierarchical Model Composition 17
Lucian P. Smith; Michael Hucka.
A new proposal for incorporating modularity (or 'model composition') into SBML Level 3.
Tipo: Presentation Palavras-chave: Biotechnology; Bioinformatics; Data Standards.
Ano: 2010 URL: http://precedings.nature.com/documents/5133/version/1
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Tales From the Code Front: Translating Modularity 17
Lucian P. Smith.
In translating modular Antimony models to and from CellML, two differences appeared: CellML's 'black box' approach vs. Antimony's 'model composition' approach, and CellML's math-based encoding vs. Antimony's object and rule-based encoding. The latter turned out to have a much larger impact on the translation than anticipated.
Tipo: Presentation Palavras-chave: Biotechnology; Bioinformatics; Data Standards.
Ano: 2010 URL: http://precedings.nature.com/documents/5132/version/1
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The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 1 Core 17
Michael Hucka; Frank T. Bergmann; Stefan Hoops; Sarah M. Keating; Sven Sahle; James C. Schaff; Lucian P. Smith; Darren J. Wilkinson.
This is the final specification for _Release 1_ of *SBML Level 3 Version 1 Core*, an electronic model representation format for systems biology.

SBML is oriented towards describing biological processes of the sort common in research on a number of topics, including metabolic pathways, cell signaling pathways, and many others. SBML is defined neutrally with respect to programming languages and software encoding; however, it is oriented primarily towards allowing models to be encoded using XML. This document contains many examples of SBML models written in XML.

More information about SBML and this specification is available online at...
Tipo: Manuscript Palavras-chave: Bioinformatics; Data Standards.
Ano: 2010 URL: http://precedings.nature.com/documents/4959/version/1
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