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	Provedor de dados 17 (2) Autor Cesar Arze (2) James R. White (2) Malcom Matalka (2) Owen White (2) Samuel V. Angiuoli (2) The CloVR Team (2) W. Florian Fricke (2) Mais... Palavra-chave Bioinformatics (2) Genetics & Genomics (2) Microbiology (2) Tipo do documento Manuscript (2) Ano 2011 (2) País United Kingdom (2)		Ordenar por:  Relevância Autor Título Ano Registros recuperados: 2 Primeira ... 1 ... Última CloVR-Metagenomics: Functional and taxonomic microbial community characterization from metagenomic whole-genome shotgun (WGS) sequences – standard operating procedure, version 1.0 17 James R. White; Cesar Arze; Malcom Matalka; The CloVR Team; Owen White; Samuel V. Angiuoli; W. Florian Fricke. The CloVR-Metagenomics pipeline employs several well-known tools and protocols for the analysis of metagenomic whole-genome shotgun (WGS) sequence datasets:

A) UCLUST – a C++-based software package for clustering redundant DNA sequences and removing artificial 454 replicates;
B) BLASTX and BLASTN for functional and taxonomic assignment of sequences, respectively;
C) Metastats and custom R scripts to generate additional statistical and graphical evaluation.

The CloVR-Metagenomics pipeline accepts as input multiple fasta files (1 sample per file) and a corresponding tab-delimited metadata file that specifies features associated with the samples,... Tipo: Manuscript Palavras-chave: Genetics & Genomics; Microbiology; Bioinformatics. Ano: 2011 URL: http://precedings.nature.com/documents/5886/version/3 CloVR-Metagenomics: Functional and taxonomic microbial community characterization from metagenomic whole-genome shotgun (WGS) sequences – standard operating procedure, version 1.0 17 James R. White; Cesar Arze; Malcom Matalka; The CloVR Team; Owen White; Samuel V. Angiuoli; W. Florian Fricke. The CloVR-Metagenomics pipeline employs several well-known tools and protocols for the analysis of metagenomic whole-genome shotgun (WGS) sequence datasets:

A) UCLUST – a C++-based software package for clustering redundant DNA sequences and removing artificial 454 replicates;
B) BLASTX and BLASTN for functional and taxonomic assignment of sequences, respectively;
C) Metastats and custom R scripts to generate additional statistical and graphical evaluation.

The CloVR-Metagenomics pipeline accepts as input multiple fasta files (1 sample per file) and a corresponding tab-delimited metadata file that specifies features associated with the samples,... Tipo: Manuscript Palavras-chave: Genetics & Genomics; Microbiology; Bioinformatics. Ano: 2011 URL: http://precedings.nature.com/documents/5886/version/2 Registros recuperados: 2 Primeira ... 1 ... Última

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