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Modélisation des blooms de Gymnodinium mikimotoï le long de la façade atlantique française : répartition spatiale ArchiMer
Loyer, Sophie; Lazure, Pascal; Gentien, Patrick; Menesguen, Alain.
In order to study the occurrence of Gymnodinium mikimotoï bloom on the French Atlantic coast, a three-dimensional model of primary production was set up. The biological model was coupled to a hydrodynamic model previously developed at Ifremer, by the intermediary of transport, diffusion and heat fluxes. The cycles of three limiting elements for the phytoplankton growth were modelised: nitrogen, phosphorus and silicon. The second phase of the study aimed at reproducing the summer dinoflagellate blooms. In this new approach a model of the species Gymnodinium mikimotoï was coupled with the previous biomass model which provides the physical and chemical environments. The study focuses on the results obtained by this specific sub-model. The parametrisation was...
Tipo: Text Palavras-chave: Turbulence; Dinoflagellés; Gymnodinium mikimotoï; Modèle; Nutriments; Turbulence; Dinoflagellate; Gymnodinium mikimotoï; Model; Nutrients.
Ano: 2001 URL: https://archimer.ifremer.fr/doc/00479/59100/61738.pdf
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The growth of the banded carpet shell (Paphia rhomboides) in a contrasted region, the English Channel (Western Europe): A modelling study ArchiMer
Savina, Marie; Menesguen, Alain.
Paphia rhombofdes is an infaunal filter-feeding bivalve, particularly widespread and abundant in the English Channel. In order to investigate the influence of the growth-related post-settlement processes on its distribution, a spatial growth model was developed and linked to an existing ecological model of the English Channel. This model was partially parameterized on the basis of a specific ecophysiological experimental study, and calibrated with growth data collected in the "Golfe Normand-Breton" (GNB), a region of the English Channel. Compared to the actual distribution of P. rhomboides, the results suggest a strong influence of the growth-related processes on the distribution of the species: particularly, the extremely low growth obtained with the...
Tipo: Text Palavras-chave: Distribution; Meroplanktonic invertebrates; Ecophysiology; Growth model; English channel; Paphia rhomboides.
Ano: 2007 URL: http://archimer.ifremer.fr/doc/2007/publication-3115.pdf
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Simulation de l'effet sur l’eutrophisation côtière bretonne de 3 scénarios de réduction des teneurs en nitrate et phosphate de chaque bassin versant breton et de la Loire ArchiMer
Dussauze, Morgan; Menesguen, Alain.
This study commissioned by the Région Bretagne and the Agence de l'Eau Loire Bretagne aimed at assessing on a mathematical modelling basis the marine influence of most of watersheds in Brittany, and the impact of 4 scenarios of reduction of the loadings of each of these watersheds on the phytoplanctonic biomass and ulva mass proliferation. The ecological 3D model ECOMARS3D has been applied to a domain containing Brittany (which is also used in an operational mode for putting everyday the 2dayforecasts on the website: http://www.previmer.org/previsions/production_primaire/modele_eco_mars3d_bretagne) and to 6 zooms which enabled a finer representation of coastal waters. This study highlighted the fact that: •a nitrate reduction for any river has no effect on...
Tipo: Text Palavras-chave: Bretagne; Bassins versants; Eaux côtières; Nitrate; Phosphate; Marée verte; Ulve; Diatomée; Dinoflagellé; Modèle mathématique; Brittany; Watersheds; Coastal waters; Nitrate; Phosphate; Green tide; Ulva; Diatom; Dinoflagellate; Mathematical model.
Ano: 2008 URL: http://archimer.ifremer.fr/doc/00097/20804/18429.pdf
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On the interest of using field primary production data to calibrate phytoplankton rate processes in ecosystem models ArchiMer
Grangere, Karine; Lefebvre, Sebastien; Menesguen, Alain; Jouenne, Fabien.
In many ecosystem models based on empirical formulations, parameters generally are calibrated in order to achieve the best fit between measured and simulated chlorophyll a standing stocks. An accurate calibration of rate processes as primary production rarely is taken into account. In this paper, we test the usefulness of calibration of phytoplankton photosynthetic processes in an ecosystem model using field primary production data. We used 18 months of photosynthetic process data from the Baie des Veys ecosystem (Normandy, France). Five empirical formulations of photosynthesis-irradiance curve models amongst the most widely used were tested. In each formulation, the variability of photosynthetic parameters (i.e. the light-saturated rate of photosynthesis...
Tipo: Text Palavras-chave: Baie des Veys; Normandy; France; Diatoms; Chlorophyll a to carbon ratio; Parameter optimisation; Mechanistic formulations; Empirical formulations; Photosynthesis irradiance curve.
Ano: 2009 URL: http://archimer.ifremer.fr/doc/2009/publication-6810.pdf
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Simulations de rejet en rade de Brest d'ulves draguées dans l'anse du Moulin Blanc ArchiMer
Menesguen, Alain.
This document deals with the 3D ecological model, tailor-made in 2001 (Leblond et al., 2001) to answer a contractual demand from the CUB on the origin of the nitrogen involved in the green tide on the Moulin Blanc beach. This mathematical model of the roadsted of Brest was especially designed for a precise study of the Elorn rivermouth (area where the mesh is square, 150 m long on each side), and enables not only a hydrodynamic study, but also a study on the fate of the nitrogen and phosphorus rejects in this area. Concerning the hydrodynamic part, this model, based on the IFREMER SiAM3D code, recreates a tide propagation validated by measures, in spring tide and slack tide, in terms of surface elevation and speed ranges, as well as the freshening plume of...
Tipo: Text
Ano: 2006 URL: http://archimer.ifremer.fr/doc/2006/rapport-6326.pdf
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Two- or three-layered box-models versus fine 3D models for coastal ecological modelling? A comparative study in the English Channel (Western Europe) ArchiMer
Menesguen, Alain; Cugier, Philippe; Loyer, Sophie; Vanhoutte Brunier, Alice; Hoch, Thierry; Guillaud, Jean-francois; Gohin, Francis.
The general trend in ecosystem modelling is to improve the spatial resolution by shifting from rough box-models to fine 3D models. Despite the continuous speeding-up of computing, 3D models involving numerous state variables may remain intractable, especially for parameter calibration, when processes with long half-life periods (i.e, from years to decades) are introduced, such as the behaviour of organic matter in sediment and population dynamics of benthic species. In these cases, a first approach can be provided by fast-running box-models, if they take into account the most crucial hydrodynamic properties of the system. In a macrotidal shelf sea such as the English Channel, the long-term horizontal transport can be summarized by the tidal residual...
Tipo: Text Palavras-chave: English Channel; Stratification; Diatom/dinoflagellate succession; 3D model; Layered box model.
Ano: 2007 URL: http://archimer.ifremer.fr/doc/2007/publication-2315.pdf
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Eutrophication: A new wine in an old bottle? ArchiMer
Le Moal, Morgane; Gascuel-odoux, Chantal; Menesguen, Alain; Souchon, Yves; Etrillard, Claire; Levain, Alix; Moatar, Florentina; Pannard, Alexandrine; Souchu, Philippe; Lefebvre, Alain; Pinay, Gilles.
Eutrophication is one of the most common causes of water quality impairment of inland and marine waters. Its best-known manifestations are toxic cyanobacteria blooms in lakes and waterways and proliferations of green macro algae in coastal areas. The term eutrophication is used by both the scientific community and public policy-makers, and therefore has a myriad of definitions. The introduction by the public authorities of regulations to limit eutrophication is a source of tension and debate on the activities identified as contributing or having contributed decisively to these phenomena. Debates on the identification of the driving factors and risk levels of eutrophication, seeking to guide public policies, have led the ministries in charge of the...
Tipo: Text Palavras-chave: Eutrophication; Nitrogen; Phosphorus; Algae bloom; Land-sea continuum; Diffuse pollution.
Ano: 2019 URL: https://archimer.ifremer.fr/doc/00456/56734/58551.pdf
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Modeling the nitrogen cycle in the channel : a first approach ArchiMer
Hoch, Thierry; Menesguen, Alain; Bentley, D.
A simple model of the nitrogen cycle in the Channel is proposed. Based on the long-term circulation, this box-model permits the description of the spring phytoplankton bloom in the whole Channel. Spring western thermal stratification has not been taken into account; consequently, the earliest phytoplanktonic development is observed in the eastern Channel, followed by the western, deeper part. This model also shows the influence of nutrient supply from the rivers on the Channel ecosystem, and particularly the influence of the river Seine on the chlorophyll concentrations along the eastern French coast. Comparison of calculated data with measurements shows a fairly good agreement in the eastern Channel but discrepancies are encountered for the western part....
Tipo: Text Palavras-chave: CHANNEL; BOX-MODEL; NITROGEN; PHYTOPLANKTON.
Ano: 1993 URL: http://archimer.ifremer.fr/doc/00100/21128/18748.pdf
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How to avoid eutrophication in coastal seas? A new approach to derive river-specific combined nitrate and phosphate maximum concentrations ArchiMer
Menesguen, Alain; Desmit, Xavier; Duliere, Valerie; Lacroix, Genevieve; Thouvenin, Benedicte; Thieu, Vincent; Dussauze, Morgan.
Since 1950, increase in nitrogen (N) and phosphorus (P) river loadings in the North-East Atlantic (NEA) continental seas has induced a deep change in the marine coastal ecosystems, leading to eutrophication symptoms in some areas. In order to recover a Good Ecological Status (GES) in the NEA, as required by European Water Framework Directive (WFD) and Marine Strategy Framework Directive (MSFD), reductions in N- and P-river loadings are necessary but they need to be minimal due to their economic impact on the farming industry. In the frame of the “EMoSEM” European project, we used two marine 3D ecological models (ECO-MARS3D, MIRO&CO) covering the Bay of Biscay, the English Channel and the southern North Sea to estimate the contributions of various...
Tipo: Text Palavras-chave: Marine eutrophication; Ecosystem modelling; Nutrient reduction scenario; Linear optimization; Good ecological status; EU policies.
Ano: 2018 URL: https://archimer.ifremer.fr/doc/00426/53774/54661.pdf
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Reducing marine eutrophication may require a paradigmatic change ArchiMer
Desmit, X.; Thieu, V.; Billen, G.; Campuzano, F.; Duliere, V.; Garnier, J.; Lassaletta, L.; Menesguen, Alain; Neves, R.; Pinto, L.; Silvestre, M.; Sobrinho, J. L.; Lacroix, G..
Marine eutrophication in the North-East Atlantic (NEA) strongly relies on nutrient enrichment at the river outlets, which is linked to human activities and land use in the watersheds. The question is whether human society can reduce its nutrient emissions by changing land use without compromising food security. A new version of Riverstrahler model (pyNuts-Riverstrahler) was designed to estimate the point and diffuse nutrient emissions (N, P, Si) to the rivers depending on land use in the watersheds across a large domain (Western Europe agro-food systems, waste water treatment). The loads from the river model have been used as inputs to three marine ecological models (PCOMS, ECO-MARS3D, MIRO&CO) covering together a large part of the NEA from the Iberian...
Tipo: Text Palavras-chave: North-East Atlantic; Eutrophication; Model scenarios; Land-sea continuum; Land use; Pristine; Management support.
Ano: 2018 URL: http://archimer.ifremer.fr/doc/00438/55007/56426.pdf
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Les "marées vertes" en Bretagne, la responsabilité du nitrate ArchiMer
Menesguen, Alain.
Since 25 years, an increasing number of beaches and coves along the Britanny coast are invaded from spring until autumn by proliferating green macroalgae (free ulvae, fixed enteromorphae). This typical case of eutrophication, which has been well studied in the bays of Saint-Brieuc, Lannion, Douarnenez and Brest, could be explained by the conjunction of a natural containment of shallow water masses with a recent enrichment of them by nitrate river loadings. In the naturally confined sites, field measurements of summer biomass showed a good correlation with the spring nitrate river loadings ; furthermore, the summer rarefaction of these loadings explains the fall of the nitrogen content of the ulvae, which induces the summer stop of the algal growth. The...
Tipo: Text Palavras-chave: Intensive farming; Biogeochemical models; Coastal eutrophication; Nitrate; Ulva; Green tide; Agriculture intensive; Modèles biogéochimiques; Eutrophisation côtière; Nitrate; Ulve; Marée verte.
Ano: 2003 URL: http://archimer.ifremer.fr/doc/2003/rapport-143.pdf
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Impacts of high-nitrate freshwater inputs on macrotidal ecosystems. I. Seasonal evolution of nutrient limitation for the diatom-dominated phytoplankton of the Bay of Brest (France) ArchiMer
Del Amo, Yolanda; Le Pape, Olivier; Treguer, Paul; Queguiner, Bernard; Menesguen, Alain; Aminot, Alain.
The chemical factors (inorganic nitrogen, phosphate, silicic acid) that potentially or actually control primary production were determined for the Bay of Brest, France, a macrotidal ecosystem submitted to high-nitrate-loaded freshwater inputs (winter nitrate freshwater concentrations >700 mu M, Si:N molar ratio as low as 0.2, i.e. among the lowest ever published). Intensive data collection and observations were carried out from February 1993 to March 1994 to determine the variations of physical [salinity, temperature, photosynthetically active radiation (PAR), freshwater discharges] and chemical (oxygen and nutrients) parameters and their impacts on the phytoplankton cycle (fluorescence, pigments, primary production). With insufficient PAR the winter...
Tipo: Text Palavras-chave: Coastal ecosystem; Phytoplankton dynamics; Macrotidal; Nutrient limitation; Silicon; Eutrophication.
Ano: 1997 URL: http://archimer.ifremer.fr/doc/00337/44782/44588.pdf
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Modelling the Karenia mikimotoi bloom that occurred in the western English Channel during summer 2003 ArchiMer
Vanhoutte Brunier, Alice; Fernand, L; Menesguen, Alain; Lyons, S; Gohin, Francis; Cugier, Philippe.
Observations from space and in situ from the R.V Corystes 8/03 Cruise show that a massive Karenia mikimotoi bloom occured during summer 2003 in the western English Channel. Due to exceptional climatoligical conditions that occured in June 2003, the installation of a very strong thermocline enhanced the development of a massive bloom over 1 million cells 1(-1) in the Central English Channel. This paper presents the application of a mathematical model of this species, previously developed in for the Bay of Biscay, into a general 3D model of the primary production of the English Channel and southern Bight of the North Sea. Allelopathic interactions exerted by K. mikimotoi on other phytoplankton species and the role of agitation in the mortality of this...
Tipo: Text Palavras-chave: Western English Channel; SeaWiFS; Primary production; Karenia mikimotoi; 3D modelling; Coupled physical biogeochemical.
Ano: 2008 URL: http://archimer.ifremer.fr/doc/2008/publication-3717.pdf
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Les risques conchylicoles en Baie de Quiberon. Troisième partie : le risque d’hypoxie pour l’huître creuse Crassostrea gigas. Rapport final du projet Risco 2010-2013 ArchiMer
Stanisiere, Jean-yves; Mazurie, Joseph; Bouget, Jean-francois; Langlade, Aime; Gabellec, Raoul; Retho, Michael; Quinsat, Kevin; Leclerc, Emilie; Cugier, Philippe; Dussauze, Morgan; Menesguen, Alain; Dumas, Franck; Gohin, Francis; Augustin, Jean-marie; Ehrhold, Axel; Sinquin, Jean-marc; Goubert, Evelyne; Dreano, Alain.
The project “Risco”, supported by the “Pôle Mer” and funded by the Regional Council of Brittany, deals with specific risks of mortality of oysters, Crassostrea gigas, cultivated on the bottom, in a subtidal bay of South Brittany : the bay of Quiberon (56, France). Massive mortalities of oysters were reported in summer 2006 in this bay, exclusively located in the deep muddy area with a positive gradient eastward. A validated biogeochemical model was applied in order to simulate the dissolved oxygen over 2000-2006 : it revealed several episodes of hypoxia, more or less intense according to years, but with the same spatial distribution. This approach proved 2006 to be the most hypoxic year since 2000. The hypoxia was due to a rare conjunction of 3 factors :...
Tipo: Text Palavras-chave: Baie Quiberon; Crassostrea gigas; Huître; Mortalité; Croissance; Hypoxie; Oxygène; Modèle; Upwelling; Loire; Vilaine; Quiberon; Crassostrea gigas; Oyster; Mortality; Growth; Hypoxia; Oxygen; Model; DEB; Upwelling; Loire; Vilaine.
Ano: 2013 URL: http://archimer.ifremer.fr/doc/00180/29131/27535.pdf
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Modelling green macroalgal blooms on the coasts of Brittany, France to enhance water quality management ArchiMer
Perrot, Thierry; Rossi, Nadege; Menesguen, Alain; Dumas, Franck.
First recorded in the 1970s, massive green macroalgal blooms have since become an annual recurrence in Brittany, France. Eutrophication (in particular to anthropogenic nitrogen input) has been identified as the main factor controlling Ulva ‘green tide’ events. In this study, we modelled Ulva proliferation using a two-dimensional model by coupling hydrodynamic and biological models (coined ‘MARS-Ulves’) for five sites along the Brittany coastline (La Fresnaye Bay, Saint-Brieuc Bay, Lannion Bay, Guissény Bay and Douarnenez Bay). Calibration of the biological model was mainly based on the seasonal variation of the maximum nitrogen uptake rate (VmaxN) and the half-saturation constant for nitrogen (KN) to reproduce the internal nutrient quotas measured in situ...
Tipo: Text Palavras-chave: 2D model; Ulva; Eutrophication; Brittany coastal waters; Tracers; Nutrient reductions.
Ano: 2014 URL: http://archimer.ifremer.fr/doc/00171/28268/26517.pdf
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Communautés du phytoplancton. Sous-région marine Manche - Mer du Nord. Evaluation initiale DCSMM. ArchiMer
Belin, Catherine; Haberkorn, Hansy; Menesguen, Alain.
Tipo: Text Palavras-chave: Manche; Mer du Nord; Communautés du phytoplancton; Biocénoses; Modélisation écologique; Synthèse bibliographique.
Ano: 2012 URL: https://archimer.ifremer.fr/doc/00327/43832/43406.pdf
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Modélisation de la production de l'huître Crassostrea gigas du bassin de Marennes-Oléron (France). Etude de l'influence des apports de nitrates du fleuve Charente sur la production primaire et ostréicole ArchiMer
Raillard, Olivier; Menesguen, Alain.
Oyster production of the Marennes-Oléron Basin is simulated using a model integrating phytoplankton growth, oyster growth and horizontal transport of suspended matter. Firstly the simulations are compared to the measurements. At season scale, the phytoplankton and nitrates evolution are well predicted by the model. In compensation, the model does not simulated well the spring/neap tidal variability of the phytoplankton. Secondly, the phytoplancton and oyster productions are calculated as a function of the nitrates river inputs. Biotic capacity of the basin appears to be particulary influenced by these nutrients during summer. On the other hand, spatial variability of the impact of the nitrates variation is clearly shown, the primary productions of the...
Tipo: Text Palavras-chave: Croissance; Production; Marennes Oléron; Crassostrea gigas; Huîtres; Modélisation.
Ano: 1991 URL: http://archimer.ifremer.fr/doc/1991/acte-3042.pdf
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Modélisation de la production primaire dans le bassin conchylicole de Marennes-Oléron (France) ArchiMer
Menesguen, Alain.
De nombreuses études in situ ainsi qu'un modèle numérique de la croissance des huîtres dans le basin de Marennes-Oléron ont montré le rôle primordial du flux de matière phytoplanctonique dans le rendement de croissance du stock conchylicole. Une part de cette nourriture planctonique est produite dans le bassin grâce aux apports de sels nutritifs du panache de dilution de la Charente. Un modèle simple du cycle de l'azote sans compartiment huître a été couplé à un modèle d'advection-dispersion en boîtes. Les premiers résultats montrent que la stimulation de la production primaire serait relativement faible dans le panache lui-même, en raison de la forte turbidité et du court temps de résidence. Par contre, au cours de leur dérive ultérieure, les masses d'eau...
Tipo: Text
Ano: 1989 URL: http://archimer.ifremer.fr/doc/00390/50179/50800.pdf
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A coastal operational oceanography system coupled to the GMES marine service ArchiMer
Lecornu, Fabrice; Dumas, Franck; Gohin, Francis; Le Traon, Pierre-yves; Menesguen, Alain; Pineau-guillou, Lucia.
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Ano: 2012 URL: http://archimer.ifremer.fr/doc/00243/35380/33883.pdf
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Détermination des "bassins récepteurs" marins des principaux fleuves français de la façade Manche-Atlantique, et de leurs rôles respectifs dans l'eutrophisation phyto-planctonique des masses d'eau DCE et des sous-régions DCSMM. Phase 1 (2013) : Calcul de scénarios optimaux à partir des " bassins récepteurs". Phase 2 (2014) : Simulation de scénarios imposés et des scénarios optimaux ArchiMer
Menesguen, Alain; Dussauze, Morgan.
- This study (granted up to 50% by the French Office for Water and Aquatic Environments ONEMA) aimed at determining by modelling (hydrodynamical/biogeochemical ECOMARS3D model) the marine "receiving basins" of the main tributaries to the French waters of the English Channel and the Bay of Biscay. Knowing the respective part of each of these marine "receiving basins" in winter nutrient distribution, some optimal scenarios of nutrient loading reduction can be computed for nitrate or phosphate in order to bring back any marine water to the Good Ecological Status regarding eutrophication, at the best efficiency/cost ratio. - The study encompasses 45 watersheds (or clusters of neighboring watersheds) which have been retained because of their sizes and flow...
Tipo: Text Palavras-chave: Zone Manche-Atlantique; Modélisation 3D; Bassins versants; Bassins récepteurs marins; Nitrate; Phosphate; Réduction d'apports; Situation "pristine"; Production primaire; Oxygène dissous; Classement DCE; Bon Etat Ecologique; Optimisation linéaire; Simplexe; Optimisation quadratique; Méthode de Beale.; English Channel; Bay of Biscay; 3D modelling; Watersheds; Receiving basins; Nitrate; Phosphate; Nutrient loading reduction; Pristine situation; Primary production; Dissolved oxygen; WFD classification; Good Ecological Status; Linear optimisation; Simplexe method; Quadratic optimisation; Beale's method..
Ano: 2015 URL: http://archimer.ifremer.fr/doc/00333/44422/44083.pdf
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