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	Provedor de dados Nature Precedings (2) Autor Miho Sera (2) Tadashi Imanishi (2) Akiko O. Noda (1) Akiyasu C. Yoshizawa (1) Alu Konno (1) Ayako Nakajima (1) Chisato Yamasaki (1) Hiroki Takahashi (1) Hisaaki Taniguchi (1) Junko Yaguchi (1) Katsuhiko Mineta (1) Kazuo Inaba (1) Keisuke Ueno (1) Kohji Hotta (1) Kouki Yonezawa (1) Lixy Yamada (1) Mamoru Nomura (1) Mia Nakachi (1) Michio Ogasawara (1) Sasakura Yasunori (1) Mais... Palavra-chave Bioinformatics (2) Data Standards (1) Tipo do documento Poster (2) Ano 2010 (2) País United Kingdom (2)		Ordenar por:  Relevância Autor Título Ano Registros recuperados: 2 Primeira ... 1 ... Última CIPRO 2.5: Ciona intestinalis Protein integrated database with large-scale omics data, bioinformatic analyses and curated annotation, with ability for user rating and comments Nature Precedings Toshinori Endo; Keisuke Ueno; Kouki Yonezawa; Katsuhiko Mineta; Kohji Hotta; Yutaka Satou; Lixy Yamada; Michio Ogasawara; Hiroki Takahashi; Ayako Nakajima; Mia Nakachi; Mamoru Nomura; Junko Yaguchi; Alu Konno; Sasakura Yasunori; Akiyasu C. Yoshizawa; Hisaaki Taniguchi; Chisato Yamasaki; Miho Sera; Tadashi Imanishi; Kazuo Inaba. CIPRO database is an integrated protein database for a tunicate species Ciona intestinalis that belongs to the Urochordata. Although the CIPRO database deals with proteomic and transcriptomic data of a single species, the animal is considered unique in the evolutionary tree, representing a possible origin of the vertebrates and is a good model for understanding chordate evolution, including that of humans. Furthermore, C. intestinalis has been one of the favorites of developmental biologists; there exists a huge amount of accumulated knowledge on its development and morphology, in addition to the recent genome sequence and gene expression data. The CIPRO database is aimed at not only collecting published data, but also presenting unique information,... Tipo: Poster Palavras-chave: Bioinformatics; Data Standards. Ano: 2010 URL: http://precedings.nature.com/documents/5435/version/1 HEAT: a New Tool for Gene Set Enrichment Analysis Using Comprehensive Annotation of Human Genes in H-InvDB Nature Precedings Tadashi Imanishi; Akiko O. Noda; Miho Sera. H-InvDB Enrichment Analysis Tool (HEAT) is a new data-mining tool for gene set enrichment analysis based on comprehensive annotations of human genes in H-InvDB. HEAT searches for H-InvDB annotations that are significantly enriched in a user-defined gene set, as compared with the entire H-InvDB representative transcripts. The advantage of HEAT is the wide variety of annotation items used for its analysis: chromosomal bands, InterPro functional domains, Gene Ontology terms, KEGG pathways, H-InvDB gene families/groups, SCOP structural domains, subcellular localization predicted by using the Wolf-PSORT program, tissue-specific gene expression as defined in the H-ANGEL database, and transcription factor binding sites in promoter regions based on JASPAR. HEAT... Tipo: Poster Palavras-chave: Bioinformatics. Ano: 2010 URL: http://precedings.nature.com/documents/5185/version/1 Registros recuperados: 2 Primeira ... 1 ... Última

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